BAC Information

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BAC

Clone NameB6Ng01-026I14
Chromosome18 (Build37)
Map Location 27,935,677 - 28,064,623
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977, EG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026I14.bB6Ng01-026I14.g
ACCDH857552DH857553
length1,096999
definitionDH857552|Mus musculus domesticus DNA, BAC clone: B6Ng01-026I14, 5' end.DH857553|Mus musculus domesticus DNA, BAC clone: B6Ng01-026I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,063,515 - 28,064,623)(27,935,677 - 27,936,684)
sequence
gaattccatgtgaagtttaataactattcaataggatccaaacacacctc
aaaagctgcgtgaggctgaacctcttttagcagtgccagcatcatgtttg
cttcattcctttgtaaatatagtgcttaatatgctttgaacaagctttgg
tcccatcatgatagacaatatttaaaccacaaacaaatatgactgttggt
actgagaaacataaccttgtttattttgatataatatttgttgcaaattt
aagtaaaaccctacaatttgaataataaaagtagttctactacagcaata
tgaacatgtaatagcatgaaaagaaatacaggaaacacaagatgccagaa
tttctcttcccccttatggatctcaaaactctcacttaatacaagtgctc
tgatcaataagaatatttcagagagccccagaaatcatattcaaagacat
gaatttctgcatgtctagagcagacactcatccccatcagtatctgatag
tcatggaccttctataaattccagtcatcttcttcctctccatctgagaa
tatagccggcaaactgaatgcattgtacaaaggatggagcatgataataa
tgcttcaaaaaggattgtctttggagatcaagtataaaagatagaaggaa
cacggagtcattgcttcccaaaaacatcccaagaaagaggcagagatctc
ttctctaaagtgcaaaagactcattgctttttgtgaattggatttcaaaa
gttttctcactacaaattaaaaaaacagtttaataattgtccctttttgt
ttgtttctctagaaagctgtgcctcttttaagttcaaactacatggggga
ttcttgttcaaataactccattttctggattttaataaaaaaataggtaa
agactcagattctgaagagcaactatattaaagtttgttgttcacctggt
tccaaagagtccaccttccagcttccctgaaccttcacaatacagacaat
cttatctgctcttcatctatgtctactttcatctcagatcagcaaggtat
atattccttggatgatgcacagtgccactcattttagtttatcatg
gaattctttgttcagttctgagccccattttttaatggggttatttgctt
ttctgaagtccaccttcttgagttctttatatatgttggatattagcccc
ctatctgatttaggataggtaaagaccctttcccaatctgttggtggtct
ttttgtcttactgacggtgtcttttgtacaggctcccctttgtttgcatc
ccaacatcccacatgcaagtgtgtttaagataacaaaggcccatggtttt
aaggatttttttttattctttaataacagaaaaccaagtgaaaacatttg
ttgtttaattttattagactatattaattatacatagtagatttcatttt
tatgcttgcatatttctatgtaatgtgttttggccacactcacccccatt
atcctctcctgctcctctagtcccattctaatttccagctagatctccta
gcaccatctttttcccacagtgtcccaaggagttgcactagaattggttg
caagaaagtgagtgagagatatttattggagtgtgtccaacatattagtg
catatactggaaaagaaatacctctcctgccctcagaagacactattcaa
atgttaattttagacccaaatatttattaggtaagggtcttctgaataca
tgtactcacagaagtgccctgtttcaagtatcacatttttcatcccctct
gtgatactagatttgctatcaaggaaataactcaagggtagtaggccagc
agttttagaagtggttgtaatccattcctgtttcttgcctaagtgtgaga
ataatttatccttttacttctgtgaggcatttgatcaaatctttctttta
tccccatgttcaggcatgctgtcatctgcatgcattcctccacttgagaa
ggtaacaactctgttgcatgttttcataagatcacgccttgctctactaa
gtaatgtctttaccaccacagtgtactctgaaaagggaattcagcagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28063515_28064623
seq2: B6Ng01-026I14.b_43_1138 (reverse)

seq1  CATGAATAAACTAAAAATGAGTGGCTACTGTTGCATCATCCAAGGGATAT  50
      |||| ||||||| |||||||||||| |||| |||||||||||||| ||||
seq2  CATG-ATAAACT-AAAATGAGTGGC-ACTG-TGCATCATCCAAGGAATAT  46

seq1  ATTACCTTGCTGAATCTGAGAATGAAAGTAAGACATTAAGATGAAGAGCA  100
      | |||||||||| ||||||| |||||||| ||||||  ||||||||||||
seq2  A-TACCTTGCTG-ATCTGAG-ATGAAAGT-AGACAT--AGATGAAGAGCA  90

seq1  GATAAGATTGTCTGTATTGTGAAAGGTTCAGGGAAGCTGGGAAGGTGGAC  150
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  GATAAGATTGTCTGTATTGTG-AAGGTTCAGGGAAGCT-GGAAGGTGGAC  138

seq1  TCCTTTGGAACCAGGTGAACAACAAACTTTAATATAGTTGCTCTTCAGAA  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTTTGGAACCAGGTGAACAACAAACTTTAATATAGTTGCTCTTCAGAA  187

seq1  TCTGAGTCTTTACCTATTTTTTTATTAAAATCCAGAAAATGGAGTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCTTTACCTATTTTTTTATTAAAATCCAGAAAATGGAGTTATTT  237

seq1  GAACAAGAATCCCCCATGTAGTTTGAACTTAAAAGAGGCACAGCTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAATCCCCCATGTAGTTTGAACTTAAAAGAGGCACAGCTTTCTA  287

seq1  GAGAAACAAACAAAAAGGGACAATTATTAAACTGTTTTTTTAATTTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAAACAAAAAGGGACAATTATTAAACTGTTTTTTTAATTTGTAG  337

seq1  TGAGAAAACTTTTGAAATCCAATTCACAAAAAGCAATGAGTCTTTTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAACTTTTGAAATCCAATTCACAAAAAGCAATGAGTCTTTTGCAC  387

seq1  TTTAGAGAAGAGATCTCTGCCTCTTTCTTGGGATGTTTTTGGGAAGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAAGAGATCTCTGCCTCTTTCTTGGGATGTTTTTGGGAAGCAAT  437

seq1  GACTCCGTGTTCCTTCTATCTTTTATACTTGATCTCCAAAGACAATCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGTGTTCCTTCTATCTTTTATACTTGATCTCCAAAGACAATCCTT  487

seq1  TTTGAAGCATTATTATCATGCTCCATCCTTTGTACAATGCATTCAGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCATTATTATCATGCTCCATCCTTTGTACAATGCATTCAGTTTG  537

seq1  CCGGCTATATTCTCAGATGGAGAGGAAGAAGATGACTGGAATTTATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTATATTCTCAGATGGAGAGGAAGAAGATGACTGGAATTTATAGAA  587

seq1  GGTCCATGACTATCAGATACTGATGGGGATGAGTGTCTGCTCTAGACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGACTATCAGATACTGATGGGGATGAGTGTCTGCTCTAGACATG  637

seq1  CAGAAATTCATGTCTTTGAATATGATTTCTGGGGCTCTCTGAAATATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTCATGTCTTTGAATATGATTTCTGGGGCTCTCTGAAATATTCT  687

seq1  TATTGATCAGAGCACTTGTATTAAGTGAGAGTTTTGAGATCCATAAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCAGAGCACTTGTATTAAGTGAGAGTTTTGAGATCCATAAGGGG  737

seq1  GAAGAGAAATTCTGGCATCTTGTGTTTCCTGTATTTCTTTTCATGCTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAATTCTGGCATCTTGTGTTTCCTGTATTTCTTTTCATGCTATT  787

seq1  ACATGTTCATATTGCTGTAGTAGAACTACTTTTATTATTCAAATTGTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTCATATTGCTGTAGTAGAACTACTTTTATTATTCAAATTGTAGG  837

seq1  GTTTTACTTAAATTTGCAACAAATATTATATCAAAATAAACAAGGTTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTTAAATTTGCAACAAATATTATATCAAAATAAACAAGGTTATG  887

seq1  TTTCTCAGTACCAACAGTCATATTTGTTTGTGGTTTAAATATTGTCTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGTACCAACAGTCATATTTGTTTGTGGTTTAAATATTGTCTATC  937

seq1  ATGATGGGACCAAAGCTTGTTCAAAGCATATTAAGCACTATATTTACAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGACCAAAGCTTGTTCAAAGCATATTAAGCACTATATTTACAAA  987

seq1  GGAATGAAGCAAACATGATGCTGGCACTGCTAAAAGAGGTTCAGCCTCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAGCAAACATGATGCTGGCACTGCTAAAAGAGGTTCAGCCTCAC  1037

seq1  GCAGCTTTTGAGGTGTGTTTGGATCCTATTGAATAGTTATTAAACTTCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTTGAGGTGTGTTTGGATCCTATTGAATAGTTATTAAACTTCAC  1087

seq1  ATGGAATTC  1109
      |||||||||
seq2  ATGGAATTC  1096

seq1: chr18_27935677_27936684
seq2: B6Ng01-026I14.g_68_1066

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGCTT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGCCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGACCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGACCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTACTGACGGTGTCTTTTGTACAGGCTCCCCTTTGTTTGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTACTGACGGTGTCTTTTGTACAGGCTCCCCTTTGTTTGCATC  200

seq1  CCAACATCCCACATGCAAGTGTGTTTAAGATAACAAAGGCCCATGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATCCCACATGCAAGTGTGTTTAAGATAACAAAGGCCCATGGTTTT  250

seq1  AAGGATTTTTTTTTATTCTTTAATAACAGAAAACCAAGTGAAAACATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTTTTTTTATTCTTTAATAACAGAAAACCAAGTGAAAACATTTG  300

seq1  TTGTTTAATTTTATTAGACTATATTAATTATACATAGTAGATTTCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAATTTTATTAGACTATATTAATTATACATAGTAGATTTCATTTT  350

seq1  TATGCTTGCATATTTCTATGTAATGTGTTTTGGCCACACTCACCCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGCATATTTCTATGTAATGTGTTTTGGCCACACTCACCCCCATT  400

seq1  ATCCTCTCCTGCTCCTCTAGTCCCATTCTAATTTCCAGCTAGATCTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCCTGCTCCTCTAGTCCCATTCTAATTTCCAGCTAGATCTCCTA  450

seq1  GCACCATCTTTTTCCCACAGTGTCCCAAGGAGTTGCACTAGAATTGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATCTTTTTCCCACAGTGTCCCAAGGAGTTGCACTAGAATTGGTTG  500

seq1  CAAGAAAGTGAGTGAGAGATATTTATTGGAGTGTGTCCAACATATTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGTGAGTGAGAGATATTTATTGGAGTGTGTCCAACATATTAGTG  550

seq1  CATATACTGGAAAAGAAATACCTCTCCTGCCCTCAGAAGACACTATTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTGGAAAAGAAATACCTCTCCTGCCCTCAGAAGACACTATTCAA  600

seq1  ATGTTAATTTTAGACCCAAATATTTATTAGGTAAGGGTCTTCTGAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTTTAGACCCAAATATTTATTAGGTAAGGGTCTTCTGAATACA  650

seq1  TGTACTCACAGAAGTGCCCTGTTTCAAGTATCACA-TTTTCATCCCCTCT  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTACTCACAGAAGTGCCCTGTTTCAAGTATCACATTTTTCATCCCCTCT  700

seq1  GTGATACTAGATTTGCTATCAAGGAAATAACTCAAGGGTAGTAGGCCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACTAGATTTGCTATCAAGGAAATAACTCAAGGGTAGTAGGCCAGC  750

seq1  AGTTTTAGAAGTGGTTGTAATCCATTCCTGTTTCTTGCCTAAGTGTGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGAAGTGGTTGTAATCCATTCCTGTTTCTTGCCTAAGTGTGAGA  800

seq1  ATAATTTATCCTTTTACTTCTGTGAGGCATTTGATCAAATCTTTCTTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATCCTTTTACTTCTGTGAGGCATTTGATCAAATCTTTCTTTTA  850

seq1  TCCCCATGTTTCAGGCATGCTGTCATCTGCATGCATTCCTCCACTTGAGA  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATG-TTCAGGCATGCTGTCATCTGCATGCATTCCTCCACTTGAGA  899

seq1  AGGTAACAACTCTGTTGCATGGTTTCATTAGAATCACGCCTTGTCTCTAC  949
      ||||||||||||||||||||| |||||| || ||||||||||| ||||||
seq2  AGGTAACAACTCTGTTGCATGTTTTCATAAG-ATCACGCCTTG-CTCTAC  947

seq1  TTAGGTAATGTCCTTTACCACCACAGTGGTACTCTGGATAATGGGAAATT  999
       || ||||||| ||||||||||||||| ||||||||   ||  || ||||
seq2  -TAAGTAATGT-CTTTACCACCACAGT-GTACTCTG---AAAAGGGAATT  991

seq1  CAGCCAGCG  1008
      ||| |||||
seq2  CAG-CAGCG  999