BAC Information

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BAC

Clone NameB6Ng01-027E20
Chromosome18 (Build37)
Map Location 60,768,968 - 60,983,031
singlet/doubletdoublet
Overlap geneSynpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1
Upstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3
Downstream geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027E20.bB6Ng01-027E20.g
ACCDH858083DH858084
length238615
definitionDH858083|Mus musculus domesticus DNA, BAC clone: B6Ng01-027E20, 5' end.DH858084|Mus musculus domesticus DNA, BAC clone: B6Ng01-027E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,768,968 - 60,769,205)(60,982,417 - 60,983,031)
sequence
aaggaaatgttactccacacaactgccgtcaatgggagtgtccaggcaag
gctagtgggaaggatgggagccagaggtggaaacagaggttgacgggagg
cagcccattgtagcagcctgggagccctggcaacaggctgggtaaacagg
ctgggtaaactggccccccagtggggtcaggaaggacccaatgtcccagc
cactatacaacctctggcttggccgggggggggggggc
gaattccccactcagcaggtggccatctgatgtcactagaagaaaggcta
aattagacattccagctctcgccttgcttccttcccatgtggctgtgtgg
cctgggcgctcctcttctcccctctggacttaaggctttcctgttaggcc
agtggagtgggtggatactgcttagcttggggtcactgtgaaggtcagct
gggctctaagagctctgaagtgctgtgctgtgctgggtgtctggctgtta
tggggtgggagtgggcctagaagaccccaactccttgaagtttgcattac
aaagcccctccctcacccatttcctctccccttcccctgaccaagccttt
aatcagaggcgggatgtttctgtttttggttttcaaggcgattaaatccc
ctccagtttctgtcaaccgtaacagtagtccagctgtcccagctcctacc
ccagaaggagtccaggctgtgaacaccacaaagaaggcctcaggcaccac
tgcccagagctcctcctctgagagtgaggacggggacgaggacttgattc
ctgccacacaaccctccacctatggtaagcgctgctgcagtgggtgctgt
tctgccaggactggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_60768968_60769205
seq2: B6Ng01-027E20.b_49_286

seq1  AAGGAAATGTTACTCCACACAACTGCCGTCAATGGGAGTGTCCAGGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATGTTACTCCACACAACTGCCGTCAATGGGAGTGTCCAGGCAAG  50

seq1  GCTAGTGGGAAGGATGGGAGCCAGAGGTGGAAACAGAGGTTGACGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGGGAAGGATGGGAGCCAGAGGTGGAAACAGAGGTTGACGGGAGG  100

seq1  CAGCCCATTGTAGCAGCCTGGGAGCCCTGGCAACAGGCTGGGTAAACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATTGTAGCAGCCTGGGAGCCCTGGCAACAGGCTGGGTAAACAGG  150

seq1  CTGGGTAAACTGGCCCCCCAGTGGGGTCAGGAAGGACCCAATGTCCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAAACTGGCCCCCCAGTGGGGTCAGGAAGGACCCAATGTCCCAGC  200

seq1  CACTATACAACCTCTGGCTTGGCCGGGGGGGGGGGGGC  238
      ||||||||||||||||||||||||||||||||||||||
seq2  CACTATACAACCTCTGGCTTGGCCGGGGGGGGGGGGGC  238

seq1: chr18_60982417_60983031
seq2: B6Ng01-027E20.g_69_683 (reverse)

seq1  GCCCGTCCTGGCCGAACAGCACCCACTGCAGCAGCGCTTACCATAGGTGG  50
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCCTGGCAGAACAGCACCCACTGCAGCAGCGCTTACCATAGGTGG  50

seq1  AGGGTTGTGTGGCAGGAATCAAGTCCTCGTCCCCGTCCTCACTCTCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGTGTGGCAGGAATCAAGTCCTCGTCCCCGTCCTCACTCTCAGAG  100

seq1  GAGGAGCTCTGGGCAGTGGTGCCTGAGGCCTTCTTTGTGGTGTTCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTCTGGGCAGTGGTGCCTGAGGCCTTCTTTGTGGTGTTCACAGC  150

seq1  CTGGACTCCTTCTGGGGTAGGAGCTGGGACAGCTGGACTACTGTTACGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCCTTCTGGGGTAGGAGCTGGGACAGCTGGACTACTGTTACGGT  200

seq1  TGACAGAAACTGGAGGGGATTTAATCGCCTTGAAAACCAAAAACAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAACTGGAGGGGATTTAATCGCCTTGAAAACCAAAAACAGAAAC  250

seq1  ATCCCGCCTCTGATTAAAGGCTTGGTCAGGGGAAGGGGAGAGGAAATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGCCTCTGATTAAAGGCTTGGTCAGGGGAAGGGGAGAGGAAATGGG  300

seq1  TGAGGGAGGGGCTTTGTAATGCAAACTTCAAGGAGTTGGGGTCTTCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGGGGCTTTGTAATGCAAACTTCAAGGAGTTGGGGTCTTCTAGG  350

seq1  CCCACTCCCACCCCATAACAGCCAGACACCCAGCACAGCACAGCACTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCACCCCATAACAGCCAGACACCCAGCACAGCACAGCACTTCA  400

seq1  GAGCTCTTAGAGCCCAGCTGACCTTCACAGTGACCCCAAGCTAAGCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTTAGAGCCCAGCTGACCTTCACAGTGACCCCAAGCTAAGCAGTA  450

seq1  TCCACCCACTCCACTGGCCTAACAGGAAAGCCTTAAGTCCAGAGGGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCACTCCACTGGCCTAACAGGAAAGCCTTAAGTCCAGAGGGGAGA  500

seq1  AGAGGAGCGCCCAGGCCACACAGCCACATGGGAAGGAAGCAAGGCGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCGCCCAGGCCACACAGCCACATGGGAAGGAAGCAAGGCGAGAG  550

seq1  CTGGAATGTCTAATTTAGCCTTTCTTCTAGTGACATCAGATGGCCACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGTCTAATTTAGCCTTTCTTCTAGTGACATCAGATGGCCACCTG  600

seq1  CTGAGTGGGGAATTC  615
      |||||||||||||||
seq2  CTGAGTGGGGAATTC  615