BAC Information

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BAC

Clone NameB6Ng01-027G21
Chromosome18 (Build37)
Map Location 51,176,298 - 51,319,255
singlet/doubletdoublet
Overlap genePrr16
Upstream geneTnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
Downstream geneEG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027G21.bB6Ng01-027G21.g
ACCDH858173DH858174
length171923
definitionDH858173|Mus musculus domesticus DNA, BAC clone: B6Ng01-027G21, 5' end.DH858174|Mus musculus domesticus DNA, BAC clone: B6Ng01-027G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,319,085 - 51,319,255)(51,176,298 - 51,177,227)
sequence
gaattctatgctgagtgttcacagtagacatcctgctgtacttttcttgc
tagacagcaatctctgaataccttagctaagttttcatagaaaatctacc
tacgaacttattattgttttaatcctagagcttttcccactatcatatat
atatatatatggtgggggtgt
gaattcctaataattctatccatccacagaactaataaaaaacaagaaaa
tatcattttaggtagtttcacctcctacctttgatacaaacttagacaaa
ttaaggtgaaatgagaatatcatggaagtaatattgcaaaagcttggatc
tggtcatggtgttttagcatttgaagatatgttgaaaagcttttaggtcc
ttatttcttgtccacagatcaaataaactctctgagctcagtggttatca
aacactatcatatgtcagtaccactctgagaagtgattagaatgaattgt
agagatttaactcccgcgtttcggatttgtcaggttgggagttgtctggg
aggatctgcattctaatatttcccaagcagaataatggtattggtctgga
atcacacttggacaatctctgtgctagatttggttttagttctttgaaca
gatactatagtgggagactacaaaactaataaccaagggccccttccctg
actgtaattgtgccagtataaacaactaataggaaaaggaaagtgacctt
gaagaaataaagtctagtgagaaatactgagcatatataattgacgatat
agacacagatacagtaacaaggctaataggacatagactataacagaaaa
ggatcttcataaaatgtccatgtcattgcaatgtcttagccaagtgaaca
agaggccattggtgctccagtcaagagagggaaaaatctcaaatgttagt
tttcaagattatgttacctgttaaactagaaatgtgcagagacacatatt
taaaaggaggtactcaacttgtccccattcctgtcttatttggagggaaa
actagattatcatcttttctgatttcaaattttagaagggtgacttggag
gaactcaccttgtcggaattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51319085_51319255
seq2: B6Ng01-027G21.b_35_205 (reverse)

seq1  ACACCCCCACCATATATATATATATATGATAGTGGGAAAAGCTCTAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCACCATATATATATATATATGATAGTGGGAAAAGCTCTAGGAT  50

seq1  TAAAACAATAATAAGTTCGTAGGTAGATTTTCTATGAAAACTTAGCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAATAATAAGTTCGTAGGTAGATTTTCTATGAAAACTTAGCTAAG  100

seq1  GTATTCAGAGATTGCTGTCTAGCAAGAAAAGTACAGCAGGATGTCTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGAGATTGCTGTCTAGCAAGAAAAGTACAGCAGGATGTCTACTG  150

seq1  TGAACACTCAGCATAGAATTC  171
      |||||||||||||||||||||
seq2  TGAACACTCAGCATAGAATTC  171

seq1: chr18_51176298_51177227
seq2: B6Ng01-027G21.g_66_988

seq1  GAATTCCTAATAATTCTATCCATCCACAGAACTAATAAAAAACAAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATAATTCTATCCATCCACAGAACTAATAAAAAACAAGAAAA  50

seq1  TATCATTTTAGGTAGTTTCACCTCCTACCTTTGATACAAACTTAGACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTTAGGTAGTTTCACCTCCTACCTTTGATACAAACTTAGACAAA  100

seq1  TTAAGGTGAAATGAGAATATCATGGAAGTAATATTGCAAAAGCTTGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTGAAATGAGAATATCATGGAAGTAATATTGCAAAAGCTTGGATC  150

seq1  TGGTCATGGTGTTTTAGCATTTGAAGATATGTTGAAAAGCTTTTAGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGGTGTTTTAGCATTTGAAGATATGTTGAAAAGCTTTTAGGTCC  200

seq1  TTATTTCTTGTCCACAGATCAAATAAACTCTCTGAGCTCAGTGGTTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTGTCCACAGATCAAATAAACTCTCTGAGCTCAGTGGTTATCA  250

seq1  AACACTATCATATGTCAGTACCACTCTGAGAAGTGATTAGAATGAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATCATATGTCAGTACCACTCTGAGAAGTGATTAGAATGAATTGT  300

seq1  AGAGATTTAACTCCCGCGTTTCGGATTTGTCAGGTTGGGAGTTGTCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTAACTCCCGCGTTTCGGATTTGTCAGGTTGGGAGTTGTCTGGG  350

seq1  AGGATCTGCATTCTAATATTTCCCAAGCAGAATAATGGTATTGGTCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGCATTCTAATATTTCCCAAGCAGAATAATGGTATTGGTCTGGA  400

seq1  ATCACACTTGGACAATCTCTGTGCTAGATTTGGTTTTAGTTCTTTGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTTGGACAATCTCTGTGCTAGATTTGGTTTTAGTTCTTTGAACA  450

seq1  GATACTATAGTGGGAGACTACAAAACTAATAACCAAGGGCCCCTTCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATAGTGGGAGACTACAAAACTAATAACCAAGGGCCCCTTCCCTG  500

seq1  ACTGTAATTGTGCCAGTATAAACAACTAATAGGAAAAGGAAAGTGACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAATTGTGCCAGTATAAACAACTAATAGGAAAAGGAAAGTGACCTT  550

seq1  GAAGAAATAAAGTCTAGTGAGAAATACTGAGCATATATAATTGACGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATAAAGTCTAGTGAGAAATACTGAGCATATATAATTGACGATAT  600

seq1  AGACACAGATACAGTAACAAGGCTAATAGGACATAGACTATAACAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGATACAGTAACAAGGCTAATAGGACATAGACTATAACAGAAAA  650

seq1  GGATCTTCATAAAATGTCCATGTCATTGCAATGTCTTAGCCAAGTGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTCATAAAATGTCCATGTCATTGCAATGTCTTAGCCAAGTGAACA  700

seq1  AGAGGCCATTGGTGCTCCAGTCAAGAGAGGGAAAAATCTCAAATGTTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCATTGGTGCTCCAGTCAAGAGAGGGAAAAATCTCAAATGTTAGT  750

seq1  TTTCAAGATTATGTTACCTGTTAAACTAGAAATGTGCAGAGACAACATAT  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCAAGATTATGTTACCTGTTAAACTAGAAATGTGCAGAGAC-ACATAT  799

seq1  TTAAAAGGAGGTACTCAACTTGTCCCCATTCCTGCCTTATTTGGAGGGAA  850
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TTAAAAGGAGGTACTCAACTTGTCCCCATTCCTGTCTTATTTGGAGGG-A  848

seq1  AAACTAGATTATCATCTCTTTCAGATTTACAAATTTTAGAAAGGCTGAGC  900
      ||||||||||||||||| |||| ||||| |||||||||| |||| ||| |
seq2  AAACTAGATTATCATCT-TTTCTGATTT-CAAATTTTAG-AAGGGTGA-C  894

seq1  TTGGAGGAACTTCAGCTTGTCTGGATTTTT  930
      |||||||||| ||| |||||| | ||||||
seq2  TTGGAGGAAC-TCACCTTGTCGGAATTTTT  923