BAC Information

Click to search

BAC

Clone NameB6Ng01-027J02
Chromosome18 (Build37)
Map Location 46,231,737 - 46,232,875
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC225457, LOC100042900, Kcnn2
Downstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027J02.bB6Ng01-027J02.g
ACCDH858277DH858278
length1,2511,028
definitionDH858277|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J02, 5' end.DH858278|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaactctctcttaccaatggacatctagacaaaatctaaacagag
aagttatggaattaacagacattattactcaaatggatataatagatatc
tacagaacatttatccaaacctgaaagaatacactgtcttctcagaacct
catggaactgcctccttaactgaccacatactcagtcacaaagcaagtct
cataagatacaagaaaattaaaataagaccctgtatcctatcagaccacc
acaaattaaaactgaatttcgacaacagaaacaacagaaaatctacaaac
tcatggaaactgaaaaactctctactaaatgactactaagtcaaggcaga
ataaagaaaaaaatagaagacttcctagaattcaatgattatgagtgcac
aacatacccaaatttatgggacacaatgaaaatagtgtttatagcactaa
gtgccttcaggaagatattagtgagaaagaggagtagatgtcaggaaata
accaaactgagggctgaaatcaataaaatagaaacaaagagaacaataca
aagaatcaataaaacaaagagttggttctttgagaaaatcaacaagataa
tcaaacccctatacaaactaactcaaaggcaaagagaatatccacattaa
caaaatcagaagtgaaaacagacactgaggaaattcaaaggtcagatttc
aaaaattggtattccacaaaattggaaactctaaacgaaatggactattt
tcttaatagatatcacttactaaaaataaatcatggtcagataagcattt
aaagtagacttataacccctaaggaagtagaagcaatcattaaatatctc
acaaacaaagaccaggaccagatggttttagtacagaatttaccaaacat
tcaaagaggagccaataccaatgctccttaaattattccacaaaatagaa
acagaagaaacattgccaagacattttatgagacatactcacccttatgc
ccaaaccaaccaagatcaaagagaattacagacatttcttataacattga
acaaaaatactacaaactactaagaatctacgaaagatcatctcagatca
agtagtttcattcagatcagatactccaattaatcgtcactgatctactt
aaacaactggaaaaaaacattagtgtgaaactctgcaagaaaatcagctt
tctataagccttggagcacgggattccgtcatctcctacagtaagagcga
t
gaattcttatctgtgtttttatgttttgaaaagcaagagtgaaaatcagg
aagggtggcataggcttgtaagcctagtgcagaggactgagagttcaggg
ccagctttaggttgatggcaagactcttgacttttatgtcttaaaagtct
agggggatagaaacctggaaggaaaaataaacaaaataagttgcagtaaa
ctcctctctgaactatctatgtgtgtctaatgtgaggctgattcttttca
gaagtcccacgaaatcagtgatgaagcagaagggaggaggagagaagaaa
gaagattctgttgggaatactgttggaccaagtgtcctttcttttggtta
ggtattcattttctcctcaaagcacagtaccatgttcctgccaggagaat
agtactagtatgtgtaaacatgacagtgggaaagtaacaaaatataaagg
agaggataaactctctgctgcaaaatatttctggcacccatttaagaaaa
tatgctaaaagttttaatgaagtgagtgttctctgccttctgactcctgt
ggttgtgtccagactcagaggtgattgagaagaaagggagatggtctggc
agggaaaagtatatggatgctgggatgggtgaagaatgggctcagtcaat
atttttctgtataggatcagataggaaatatttttaatcttatctagaat
ctctatgataactattttgactttgtgtaggtcaaaatcaggctcgtcca
acaaaacttcattttctataaatagacatccagctaaatttgtctcacag
agtctagtttgccactccccagaacagagttgagccatctcttttaaggt
tacatcagtatcttttaggatgttggttctaactgtgatactggtacctc
ctcttccgtaccagtaacattgttatcctaggaacacacctggcctaatt
ccacagtgtatttgggctgcctttgttcagtcactaaatcaagtctagga
gaatagtagagctgcctcttcaggtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_46231737_46232875
seq2: B6Ng01-027J02.g_66_1093 (reverse)

seq1  TGCACACTGTAGAGACAGAGAGTAAAATCTACCAGACTTGATAACTATGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGAGTGACTAGCTGATCCTTCATCCCCGTATCCGTCCTCTTTACCAAAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAAATTGCAGCTAATTGCA-CTGAAGAGGCAGCTCTACTTATCTCCTAGA  149
                     |||| |||||||||||||||||||  |||||||||
seq2  ---------------TGCACCTGAAGAGGCAGCTCTACTATTCTCCTAGA  35

seq1  CCTGAATTTAGTGAACTGAAACAAAGGCAGCCCAAATACACCTGTGGAAT  199
      | || |||||||| |||| ||||||||||||||||||||| |||||||||
seq2  CTTG-ATTTAGTG-ACTG-AACAAAGGCAGCCCAAATACA-CTGTGGAAT  81

seq1  TAGG-CAGGTGTGTTCCTAGGATAACAATGGTAACTGGTACGG-AGAGGA  247
      |||| |||||||||||||||||||||||| || |||||||||| ||||||
seq2  TAGGCCAGGTGTGTTCCTAGGATAACAAT-GTTACTGGTACGGAAGAGGA  130

seq1  GGTACCAGTATCACAGTTAGAA-CAACATCCT-AAAGATACTGATGTAAC  295
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  GGTACCAGTATCACAGTTAGAACCAACATCCTAAAAGATACTGATGTAAC  180

seq1  C-TAAAAGAGATGGCTCAACTCTGTTCTGGGGAGTGGCAAACTAGACTCT  344
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGAGATGGCTCAACTCTGTTCTGGGGAGTGGCAAACTAGACTCT  230

seq1  GTGAGACAAATTTAGCTGGATGTCTATTTATAG-AAATGAAGTTTTGTTG  393
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGAGACAAATTTAGCTGGATGTCTATTTATAGAAAATGAAGTTTTGTTG  280

seq1  GACGAGCCTGATTTTGACCTACAC-AAGTC-AAATAGTTATCATAGAGAT  441
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GACGAGCCTGATTTTGACCTACACAAAGTCAAAATAGTTATCATAGAGAT  330

seq1  TCTAGATAAGATTAAAAATATTTCCTATCTGATCCTATACAGAAAAATAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATAAGATTAAAAATATTTCCTATCTGATCCTATACAGAAAAATAT  380

seq1  TGACTGAGCCCATTCTTCACCCATCCCAGCATCCATATACTTTTCCCTGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGCCCATTCTTCACCCATCCCAGCATCCATATACTTTTCCCTGC  430

seq1  CAGACCATCTCCCTTTCTTCTCAATCACCTCTGAGTCTGGACACAACCAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCATCTCCCTTTCTTCTCAATCACCTCTGAGTCTGGACACAACCAC  480

seq1  AGGAGTCAGAAGGCAGAGAACACTCACTTCATTAAAACTTTTAGCATATT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCAGAAGGCAGAGAACACTCACTTCATTAAAACTTTTAGCATATT  530

seq1  TTCTTAAATGGGTGCCAGAAATATTTTGCAGCAGAGAGTTTATCCTCTCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAATGGGTGCCAGAAATATTTTGCAGCAGAGAGTTTATCCTCTCC  580

seq1  TTTATATTTTGTTACTTTCCCACTGTCATGTTTACACATACTAGTACTAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTGTTACTTTCCCACTGTCATGTTTACACATACTAGTACTAT  630

seq1  TCTCCTGGCAGGAACATGGTACTGTGCTTTGAGGAGAAAATGAATACCTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGCAGGAACATGGTACTGTGCTTTGAGGAGAAAATGAATACCTA  680

seq1  ACCAAAAGAAAGGACACTTGGTCCAACAGTATTCCCAACAGAATCTTCTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGAAAGGACACTTGGTCCAACAGTATTCCCAACAGAATCTTCTT  730

seq1  TCTTCTCTCCTCCTCCCTTCTGCTTCATCACTGATTTCGTGGGACTTCTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCCTCCTCCCTTCTGCTTCATCACTGATTTCGTGGGACTTCTG  780

seq1  AAAAGAATCAGCCTCACATTAGACACACATAGATAGTTCAGAGAGGAGTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCAGCCTCACATTAGACACACATAGATAGTTCAGAGAGGAGTT  830

seq1  TACTGCAACTTATTTTGTTTATTTTTCCTTCCAGGTTTCTATCCCCCTAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAACTTATTTTGTTTATTTTTCCTTCCAGGTTTCTATCCCCCTAG  880

seq1  ACTTTTAAGACATAAAAGTCAAGAGTCTTGCCATCAACCTAAAGCTGGCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAGACATAAAAGTCAAGAGTCTTGCCATCAACCTAAAGCTGGCC  930

seq1  CTGAACTCTCAGTCCTCTGCACTAGGCTTACAAGCCTATGCCACCCTTCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCTCAGTCCTCTGCACTAGGCTTACAAGCCTATGCCACCCTTCC  980

seq1  TGATTTTCACTCTTGCTTTTCAAAACATAAAAACACAGATAAGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCACTCTTGCTTTTCAAAACATAAAAACACAGATAAGAATTC  1028