BAC Information

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BAC

Clone NameB6Ng01-027L04
Chromosome18 (Build37)
Map Location 36,824,610 - 36,924,444
singlet/doubletdoublet
Overlap geneEif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1
Upstream geneDnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979
Downstream geneHars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027L04.bB6Ng01-027L04.g
ACCDH858374DH858375
length1,1211,049
definitionDH858374|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L04, 5' end.DH858375|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,824,610 - 36,825,745)(36,923,388 - 36,924,444)
sequence
gaattcagcttcctttgcaagaggtgagttaggccctactttatacatca
aagcaatgagaactgaactgtatagactaccagcctcaagtacctaagtt
taaagtgtggtgttccttctcaagtctgtaactaccaccaccaccatcct
agcctaaagcactctacaatagactagctagaatgttcaactttccttaa
tgatgcttacactgaacttggttgggtgcataagtcctttgtagtttggt
ttgccagctgaatcctagctggacagtaatctgtccaagttcctgactct
taacctcaatcattaccccttcacaggcaccaggatcatctacgacagaa
agttcctgctggagtgcaagaactcacccattgcccggacacctccctgc
tgcctccctcagattcccggggtcacaactctcccagcagtaccaccctc
caagttggagttgctgaaggaacagaagcagacagaggtagaaataaccg
gtaagaaaataggatcaactattaactgcctttgtgaagtagagttggga
ttcagttctaagagtgattcctgtgctagctgggtttacaaacccttaga
tgggttaactctattctcttgccttctctccccagatgacgaacagtttg
aaatggacatgtaatctagtgcaaaatgacctgtatggagtaatggaagg
agctctcatcctactattgccatcacctcttcctgggtatccaagggcca
gctggcctcatctaatccagaaaagaatgacttgttggttctgggcttcc
tttagttgaggcagctagaccagggatagcagcgggcaacctgccaagcc
tttagctttctctggtctatacatattcctcccaaacctcttcccctcag
ggctggcactggggaacagagtatgtcaccttctggctgcttagtaactt
tcaaaaactgtcttggctccattgttgtcctcagtgctaaattacagctg
cacatctgagggacccagcagcctggtaagagctggagggttccagctcc
cactggcccatttcagcagcaatcagctgagggaaggcacttgaattgcc
aggcacagcaataaagcctga
gaattccagacgtgctaatgcagccagtaccacagtggaggataaacagt
gataaatcttagtttcagttttctttgaccagaaaggtagctattgtgat
ggttattaagcaaatagagcctgactgctttgtattcccctagggaataa
tgaagcccagggaagttgtcacaccacctagaagtgtagaggcattaaac
atagcctgtggcaagtcacttcaaagtctggtcttaagtgcttgcggctc
ctagtgtttaactctgcccttgtctctctgcctttttttttattttttga
caggtcagtcacgcctctgtggagagcaggtggctgtggagtggctcaag
ccagacctaaagcagcacttccgccagcagcttgcaggtccctcactgcg
gttcctcaggccagatgtcagccaactaacccagaccagggagaagctgg
ggtcccaaggggctcgggctgccctgcaactgctgtgtcaacggatgaag
ctaggcagcccagtgttcctgaccaagtgtttaggaacagggcctgctgg
ctggcatcgcttttggtaccaggtggtgatccctgggcatccagtgcctt
tcagtggcctcatttgggttgtgttggcctctgattggcaggatgggcat
gaggtggccaaggatgctgtgtccgcacagctgctggaggcactgagtga
acctaggaccagcttgtggtctcctggggctgaagcaggtactatggtta
agcagtgaccccttctttttacaggtaccctaaatgggttaagcagagcc
tgtgccaaccccccagcccagcaggcctgggcagcccagggcctggtgac
agctttccctgctgggacagggccctgttgcactaagtgctactttagtt
gtgagaaccttgccctccccactgagcccaggtctgactgctatccttag
tcattccagcttgcacagagcttactatgatcttgtttttattggagact
ggctgacagagccttcctcccaccactgtcctgggttggctactggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36824610_36825745
seq2: B6Ng01-027L04.b_37_1157

seq1  GAATTCAGCTTCCTTTGCAAGAGGTGAGTTAGGCCCTACTTTATACATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCCTTTGCAAGAGGTGAGTTAGGCCCTACTTTATACATCA  50

seq1  AAGCAATGAGAACTGAACTGTATAGACTACCAGCCTCAAGTACCTAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGAGAACTGAACTGTATAGACTACCAGCCTCAAGTACCTAAGTT  100

seq1  TAAAGTGTGGTGTTCCTTCTCAAGTCTGTAACTACCACCACCACCATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTGGTGTTCCTTCTCAAGTCTGTAACTACCACCACCACCATCCT  150

seq1  AGCCTAAAGCACTCTACAATAGACTAGCTAGAATGTTCAACTTTCCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAAGCACTCTACAATAGACTAGCTAGAATGTTCAACTTTCCTTAA  200

seq1  TGATGCTTACACTGAACTTGGTTGGGTGCATAAGTCCTTTGTAGTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTACACTGAACTTGGTTGGGTGCATAAGTCCTTTGTAGTTTGGT  250

seq1  TTGCCAGCTGAATCCTAGCTGGACAGTAATCTGTCCAAGTTCCTGACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCTGAATCCTAGCTGGACAGTAATCTGTCCAAGTTCCTGACTCT  300

seq1  TAACCTCAATCATTACCCCTTCACAGGCACCAGGATCATCTACGACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCAATCATTACCCCTTCACAGGCACCAGGATCATCTACGACAGAA  350

seq1  AGTTCCTGCTGGAGTGCAAGAACTCACCCATTGCCCGGACACCTCCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGCTGGAGTGCAAGAACTCACCCATTGCCCGGACACCTCCCTGC  400

seq1  TGCCTCCCTCAGATTCCCGGGGTCACAACTCTCCCAGCAGTACCACCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCTCAGATTCCCGGGGTCACAACTCTCCCAGCAGTACCACCCTC  450

seq1  CAAGTTGGAGTTGCTGAAGGAACAGAAGCAGACAGAGGTAGAAATAACCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGAGTTGCTGAAGGAACAGAAGCAGACAGAGGTAGAAATAACCG  500

seq1  GTAAGAAAATAGGATCAACTATTAACTGCCTTTGTGAAGTAGAGTTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAATAGGATCAACTATTAACTGCCTTTGTGAAGTAGAGTTGGGA  550

seq1  TTCAGTTCTAAGAGTGATTCCTGTGCTAGCTGGGTTTACAAACCCTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTAAGAGTGATTCCTGTGCTAGCTGGGTTTACAAACCCTTAGA  600

seq1  TGGGTTAACTCTATTCTCTTGCCTTCTCTCCCCAGATGACGAACAGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAACTCTATTCTCTTGCCTTCTCTCCCCAGATGACGAACAGTTTG  650

seq1  AAATGGACATGTAATCTAGTGCAAAATGACCTGTATGGAGTAATGGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACATGTAATCTAGTGCAAAATGACCTGTATGGAGTAATGGAAGG  700

seq1  AGCTCTCATCCTACTATTGCCATCACCTCTTCCTGGGTATCCAAGGGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCATCCTACTATTGCCATCACCTCTTCCTGGGTATCCAAGGGCCA  750

seq1  GCTGGCCTCATCTAATCCAGAAAAGAATGACTTGTTGGTTCTGGGCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCATCTAATCCAGAAAAGAATGACTTGTTGGTTCTGGGCTTCC  800

seq1  TTTAGTTGAGGCAGCTAGACCAGGGATAGCAGCGGGCAACCTGCCAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTGAGGCAGCTAGACCAGGGATAGCAGCGGGCAACCTGCCAAGCC  850

seq1  TTTAGCTTTCTCTGGTCTATACATATTCCTCCCAAACCTCTTCCCCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTTCTCTGGTCTATACATATTCCTCCCAAACCTCTTCCCCTCAG  900

seq1  GGCTGGCACTGGGGAACAGAGTATGTCACCTTCTGGCTGCTTAGTAAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGCTGGCACTGGGGAACAGAGTATGTCACCTTCTGGCTGCTTAGT-AACT  949

seq1  TTCAAAAAACTGTCTTGGCTCCATTGTTGTCCTCAGTGCTAAATTCACAG  1000
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTC-AAAAACTGTCTTGGCTCCATTGTTGTCCTCAGTGCTAAATT-ACAG  997

seq1  CTGCACATCTGAGGGACCCAGCAGCCTTGGTTAAGAGGCTGGAAGTGTTT  1050
      |||||||||||||||||||||||||||  | ||||| ||||||   | ||
seq2  CTGCACATCTGAGGGACCCAGCAGCCT--GGTAAGA-GCTGGA--GGGTT  1042

seq1  CCAGCTCCCACTGGCCCATTTCCAGCAGCAATCAAGGCTTGAGGGAAGGC  1100
      ||||||||||||||||||||| ||||||||||||  || |||||||||||
seq2  CCAGCTCCCACTGGCCCATTT-CAGCAGCAATCA--GC-TGAGGGAAGGC  1088

seq1  TACTGGAATTGCCAGGCACCAGCAATAACAGCCTGA  1136
       ||| ||||||||||||| ||||||||| |||||||
seq2  -ACTTGAATTGCCAGGCA-CAGCAATAA-AGCCTGA  1121

seq1: chr18_36923388_36924444
seq2: B6Ng01-027L04.g_68_1116 (reverse)

seq1  AAACCAG-----------GGACAAGTGGTGGGAGGAAGGGCTCTTTGGTT  39
      |||||||           |||| |||||||||||||| ||||||     |
seq2  AAACCAGTAGCCAACCCAGGAC-AGTGGTGGGAGGAA-GGCTCT----GT  44

seq1  CAGCCAGTTCTCCAAATAAAAACAAAGATTCATAGTAAGCTCTGGTGCCA  89
      ||||||| ||||| ||||||||| |||| |||||||||||||| ||| ||
seq2  CAGCCAG-TCTCC-AATAAAAAC-AAGA-TCATAGTAAGCTCT-GTG-CA  88

seq1  AGCTGGGAATTGACTAAGGATAGCAGGTCAGACCCTGGGCTCAGTGGGGG  139
      ||||||  | ||||||||||||||| |||||| |||||||||||| ||||
seq2  AGCTGG--AATGACTAAGGATAGCA-GTCAGA-CCTGGGCTCAGT-GGGG  133

seq1  AGGGCAAGGTTCCTCACAACTAAAGTAGCACTTAGGTGCAACAGGGCCCT  189
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  AGGGCAAGGTT-CTCACAACTAAAGTAGCACTTA-GTGCAACAGGGCCCT  181

seq1  GTCCCAGCAGGGAAAGCTGTCACCAGGCCCTGGGCTGCCCAGGCCTGCTG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCAGGGAAAGCTGTCACCAGGCCCTGGGCTGCCCAGGCCTGCTG  231

seq1  GGCTGGGGGGTTGGCACAGGCTCTGCTTAACCCATTTAGGGTACCTGTAA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGGGTTGGCACAGGCTCTGCTTAACCCATTTAGGGTACCTGTAA  281

seq1  AAAGAAGGGGTCACTGCTTAACCATAGTACCTGCTTCAGCCCCAGGAGAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGGGTCACTGCTTAACCATAGTACCTGCTTCAGCCCCAGGAGAC  331

seq1  CACAAGCTGGTCCTAGGTTCACTCAGTGCCTCCAGCAGCTGTGCGGACAC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTGGTCCTAGGTTCACTCAGTGCCTCCAGCAGCTGTGCGGACAC  381

seq1  AGCATCCTTGGCCACCTCATGCCCATCCTGCCAATCAGAGGCCAACACAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTTGGCCACCTCATGCCCATCCTGCCAATCAGAGGCCAACACAA  431

seq1  CCCAAATGAGGCCACTGAAAGGCACTGGATGCCCAGGGATCACCACCTGG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATGAGGCCACTGAAAGGCACTGGATGCCCAGGGATCACCACCTGG  481

seq1  TACCAAAAGCGATGCCAGCCAGCAGGCCCTGTTCCTAAACACTTGGTCAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAGCGATGCCAGCCAGCAGGCCCTGTTCCTAAACACTTGGTCAG  531

seq1  GAACACTGGGCTGCCTAGCTTCATCCGTTGACACAGCAGTTGCAGGGCAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGGGCTGCCTAGCTTCATCCGTTGACACAGCAGTTGCAGGGCAG  581

seq1  CCCGAGCCCCTTGGGACCCCAGCTTCTCCCTGGTCTGGGTTAGTTGGCTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGCCCCTTGGGACCCCAGCTTCTCCCTGGTCTGGGTTAGTTGGCTG  631

seq1  ACATCTGGCCTGAGGAACCGCAGTGAGGGACCTGCAAGCTGCTGGCGGAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGCCTGAGGAACCGCAGTGAGGGACCTGCAAGCTGCTGGCGGAA  681

seq1  GTGCTGCTTTAGGTCTGGCTTGAGCCACTCCACAGCCACCTGCTCTCCAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTTTAGGTCTGGCTTGAGCCACTCCACAGCCACCTGCTCTCCAC  731

seq1  AGAGGCGTGACTGACCTGTCAAAAAATAAAAAAAAAGGCAGAGAGACAAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCGTGACTGACCTGTCAAAAAATAAAAAAAAAGGCAGAGAGACAAG  781

seq1  GGCAGAGTTAAACACTAGGAGCCGCAAGCACTTAAGACCAGACTTTGAAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTTAAACACTAGGAGCCGCAAGCACTTAAGACCAGACTTTGAAG  831

seq1  TGACTTGCCACAGGCTATGTTTAATGCCTCTACACTTCTAGGTGGTGTGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCCACAGGCTATGTTTAATGCCTCTACACTTCTAGGTGGTGTGA  881

seq1  CAACTTCCCTGGGCTTCATTATTCCCTAGGGGAATACAAAGCAGTCAGGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCCTGGGCTTCATTATTCCCTAGGGGAATACAAAGCAGTCAGGC  931

seq1  TCTATTTGCTTAATAACCATCACAATAGCTACCTTTCTGGTCAAAGAAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGCTTAATAACCATCACAATAGCTACCTTTCTGGTCAAAGAAAA  981

seq1  CTGAAACTAAGATTTATCACTGTTTATCCTCCACTGTGGTACTGGCTGCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTAAGATTTATCACTGTTTATCCTCCACTGTGGTACTGGCTGCA  1031

seq1  TTAGCACGTCTGGAATTC  1057
      ||||||||||||||||||
seq2  TTAGCACGTCTGGAATTC  1049