BAC Information

Click to search

BAC

Clone NameB6Ng01-028A16
Chromosome18 (Build37)
Map Location 42,707,831 - 42,849,713
singlet/doubletdoublet
Overlap geneTcerg1, Gpr151, LOC100042037, Ppp2r2b
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027
Downstream geneLOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028A16.bB6Ng01-028A16.g
ACCDH858626DH858627
length1,119944
definitionDH858626|Mus musculus domesticus DNA, BAC clone: B6Ng01-028A16, 5' end.DH858627|Mus musculus domesticus DNA, BAC clone: B6Ng01-028A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,707,831 - 42,708,963)(42,848,765 - 42,849,713)
sequence
gaattcagttcctaggcattttaaactccatccacagatgaatttgcatt
tctgaaacctttcatctcttttgttttgaaaactgttatgaaaaccatta
ttaattaggacctatcactttcttactgtttgcctgtccttttgtcctct
tagagttaacattaaatatctatcaaagttttttgtaacacaggaaaatg
gtgttttatattatctttaggtgtgttgtttggactggtgatgagagggt
cttcttttacaatcccaccacccgcctttctatgtgggaccggcctgatg
atttgattggaagggcggatgttgacaaaattattcaagagccccctcat
aagaaaggattggaagacatgaagaagctaagtaagtttcaaattttgaa
ttcatcctctgaatttaaccccctttcactatttgatggatagtataaag
gccatttgaaataaatttaatttaaaaaaatagactgctattctggtttg
gatacaataagaaataaaaatgtaaagaatttgaataatagtttatttta
tagaatattttttaactttgttgctaatattttcagttagtctgagatgc
tggaactgttgctgttgacttaatgcttttaatgctaatgaaacccttag
atagacttccacctccttttgtagtagtaatacagtttgcaataatcaaa
cgatgcaggatattttttatattttctaaaattttatagtttacaaaatg
caaaacttcataaaactataaaaatgaattctgtaggatgtggtagcacg
cacttttaatctcagcacttgggagatagaggcaggttgctctctgaacc
cagtccagtctggtcttcttaatgagttctagaatagcaaggctgcatat
acataataagaccccgccaaccagaaaaacaaaatcctttgactagataa
tagcttttcttcttgatatagaaatccttagctttaagacattttaaaat
ctactgcctcttctgagagtatttcagatatcaggtacaacccttgtgca
tatttttgttgtatattcttgatggcaataacccctctatgtatgtagaa
atatgtatcatttacattt
ttttcatgtagaccattaaacccatcattttgagaatgttgtcttactgc
ttaggtaagatgaaaaagtgacctgatttaaagatgggggggaagtcttt
aaaaaaaaaagtggtaagttaaaaacaaacaaacaacaacaataaaaacc
ctggtgacgcccacgggggcaaacatcacagagatggcataggagtggta
gaattagggggatgcagttctctttgttcagctttgctgtgcccatcatc
cacatgacaaagtgcagccagtccctagactgaacctcagctccaggcag
gagcctctccaactcttggtgggggtgtatcagagcatatagaagtcagt
cccttcacctctgatgaacaccctttgaaaaaaattgtttttatttccac
tgaattgcctttataaacaaaagtctaaacttttcattctgatatacaag
aaaatatatatgcatatatatgtatatatatatatacatatatatatata
tatatatatatattatgtgtaatacacacacaaacaatttttatggcaaa
agaatgtgttgaaaaggtgaaattctagaagcttaaactgagtatattct
acatgatcccaaattcctcattacacatagatgatttctttctaatactt
aagctcccattcaggctctcaaatcacagcttatggagactagatagcct
gactgtcttagaggagggaacctgggctttgtgaaaactcctatgctttg
tacctagagcgaagatccagtatcaaactaaagacatcatgcttggcagc
aagtaccttcacctgctgacaatctccccagcccattaacctgtctgcta
ggaaacttctcgaatgctcacagagcttctccttcctgtaaatagctgta
aaggtgtgattcttcgcattgttggtgtaagataaataagacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42707831_42708963
seq2: B6Ng01-028A16.b_44_1162

seq1  GAATTCAGTTCCTAGGCATTTTAAACTCCATCCACAGATGAATTTGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCTAGGCATTTTAAACTCCATCCACAGATGAATTTGCATT  50

seq1  TCTGAAACCTTTCATCTCTTTTGTTTTGAAAACTGTTATGAAAACCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACCTTTCATCTCTTTTGTTTTGAAAACTGTTATGAAAACCATTA  100

seq1  TTAATTAGGACCTATCACTTTCTTACTGTTTGCCTGTCCTTTTGTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGGACCTATCACTTTCTTACTGTTTGCCTGTCCTTTTGTCCTCT  150

seq1  TAGAGTTAACATTAAATATCTATCAAAGTTTTTTGTAACACAGGAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTAACATTAAATATCTATCAAAGTTTTTTGTAACACAGGAAAATG  200

seq1  GTGTTTTATATTATCTTTAGGTGTGTTGTTTGGACTGGTGATGAGAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTATATTATCTTTAGGTGTGTTGTTTGGACTGGTGATGAGAGGGT  250

seq1  CTTCTTTTACAATCCCACCACCCGCCTTTCTATGTGGGACCGGCCTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTACAATCCCACCACCCGCCTTTCTATGTGGGACCGGCCTGATG  300

seq1  ATTTGATTGGAAGGGCGGATGTTGACAAAATTATTCAAGAGCCCCCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTGGAAGGGCGGATGTTGACAAAATTATTCAAGAGCCCCCTCAT  350

seq1  AAGAAAGGATTGGAAGACATGAAGAAGCTAAGTAAGTTTCAAATTTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGATTGGAAGACATGAAGAAGCTAAGTAAGTTTCAAATTTTGAA  400

seq1  TTCATCCTCTGAATTTAACCCCCTTTCACTATTTGATGGATAGTATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTCTGAATTTAACCCCCTTTCACTATTTGATGGATAGTATAAAG  450

seq1  GCCATTTGAAATAAATTTAATTTAAAAAAATAGACTGCTATTCTGGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGAAATAAATTTAATTTAAAAAAATAGACTGCTATTCTGGTTTG  500

seq1  GATACAATAAGAAATAAAAATGTAAAGAATTTGAATAATAGTTTATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAATAAGAAATAAAAATGTAAAGAATTTGAATAATAGTTTATTTTA  550

seq1  TAGAATATTTTTTAACTTTGTTGCTAATATTTTCAGTTAGTCTGAGATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATTTTTTAACTTTGTTGCTAATATTTTCAGTTAGTCTGAGATGC  600

seq1  TGGAACTGTTGCTGTTGACTTAATGCTTTTAATGCTAATGAAACCCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGTTGCTGTTGACTTAATGCTTTTAATGCTAATGAAACCCTTAG  650

seq1  ATAGACTTCCACCTCCTTTTGTAGTAGTAATACAGTTTGCAATAATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTCCACCTCCTTTTGTAGTAGTAATACAGTTTGCAATAATCAAA  700

seq1  CGATGCAGGATATTTTTTATATTTTCTAAAATTTTATAGTTTACAAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCAGGATATTTTTTATATTTTCTAAAATTTTATAGTTTACAAAATG  750

seq1  CAAAACTTCATAAAACTATAAAAATGAATTCTGTAGGATGTGGTAGCACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTCATAAAACTATAAAAATGAATTCTGTAGGATGTGGTAGCACG  800

seq1  CACTTTTAATCTCAGCACTTGGGAGATAGAGGCAGGTTGCTCTCTGAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAATCTCAGCACTTGGGAGATAGAGGCAGGTTGCTCTCTGAACC  850

seq1  CAGTCCAGTCTGGTCTTCTTAATGAGTTCTAGAATAGCAAGGCTGCATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAGTCTGGTCTTCTTAATGAGTTCTAGAATAGCAAGGCTGCATAT  900

seq1  ACATAATAAGACCCCGCCAACCAGAAAAACAAAAATCCTTTGAACTAGAT  950
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  ACATAATAAGACCCCGCCAACCAGAAAAAC-AAAATCCTTTG-ACTAGAT  948

seq1  AATAGC-TTTCTTCTTGAATATAGAAATCCTTAGCTTTTAAGACATTTTA  999
      |||||| |||||||||| ||||||||||||||||| ||||||||||||||
seq2  AATAGCTTTTCTTCTTG-ATATAGAAATCCTTAGC-TTTAAGACATTTTA  996

seq1  AAATCTACTGCCTCTTCTGAGAGTATTTCAGAATATCAGGTACAAACACT  1049
      ||||||||||||||||||||||||||||||| ||||||||||| ||| ||
seq2  AAATCTACTGCCTCTTCTGAGAGTATTTCAG-ATATCAGGTAC-AACCCT  1044

seq1  TGTGCATAATTTTTTGTTGTATAATTCTTGATGGCAATAAACACTCATAT  1099
      ||||||||  |||||||||||| ||||||||||||||||| | ||| |||
seq2  TGTGCATA--TTTTTGTTGTAT-ATTCTTGATGGCAATAACCCCTC-TAT  1090

seq1  GTAATGTAGAAATATGGTAAATCATTTAACATTT  1133
      || |||||||||||||    ||||||| ||||||
seq2  GT-ATGTAGAAATATG---TATCATTT-ACATTT  1119

seq1: chr18_42848765_42849713
seq2: B6Ng01-028A16.g_73_1016 (reverse)

seq1  TTGTCTTATTTAATCCTTACACCAACACTGCGAATGAATCACACCTTTTA  50
      ||||||||||||   |||||||||||| |||||| |||||||||| ||||
seq2  TTGTCTTATTTA--TCTTACACCAACAATGCGAA-GAATCACACC-TTTA  46

seq1  CAGCTATTTACAGGAAGGGGAAGCTCTGTGAGCATTCGAGAAGTTTCCTA  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGCTATTTACAGGAAGGAGAAGCTCTGTGAGCATTCGAGAAGTTTCCTA  96

seq1  GCAGACAAGGTTAATGGGCTGGGGAGATTGTCAGCAGGTGAAGGTACTTG  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAC-AGGTTAATGGGCTGGGGAGATTGTCAGCAGGTGAAGGTACTTG  145

seq1  CTGCCAAGCATGATGTCCTTAGTTTGATACTGGATCTTCGCTCTAGGTAC  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGCCAAGCATGATGTCTTTAGTTTGATACTGGATCTTCGCTCTAGGTAC  195

seq1  AAAGCATAGGAGTTTTCACAAAGCCCAGGTTCCCTCCTCTAAGACAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAGGAGTTTTCACAAAGCCCAGGTTCCCTCCTCTAAGACAGTCA  245

seq1  GGCTATCTAGTCTCCATAAGCTGTGATTTGAGAGCCTGAATGGGAGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCTAGTCTCCATAAGCTGTGATTTGAGAGCCTGAATGGGAGCTTA  295

seq1  AGTATTAGAAAGAAATCATCTATGTGTAATGAGGAATTTGGGATCATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAGAAAGAAATCATCTATGTGTAATGAGGAATTTGGGATCATGTA  345

seq1  GAATATACTCAGTTTAAGCTTCTAGAATTTCACCTTTTCAACACATTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATACTCAGTTTAAGCTTCTAGAATTTCACCTTTTCAACACATTCTT  395

seq1  TTGCCATAAAAATTGTTTGTGTGTGTATTACACATAATATATATATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATAAAAATTGTTTGTGTGTGTATTACACATAATATATATATATAT  445

seq1  ATATATATATATGTATATATATATATACATATATATGCATATATATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATGTATATATATATATACATATATATGCATATATATTTTC  495

seq1  TTGTATATCAGAATGAAAAGTTTAGACTTTTGTTTATAAAGGCAATTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATCAGAATGAAAAGTTTAGACTTTTGTTTATAAAGGCAATTCAG  545

seq1  TGGAAATAAAAACAATTTTTTTCAAAGGGTGTTCATCAGAGGTGAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAAAAACAATTTTTTTCAAAGGGTGTTCATCAGAGGTGAAGGGA  595

seq1  CTGACTTCTATATGCTCTGATACACCCCCACCAAGAGTTGGAGAGGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTATATGCTCTGATACACCCCCACCAAGAGTTGGAGAGGCTCC  645

seq1  TGCCTGGAGCTGAGGTTCAGTCTAGGGACTGGCTGCACTTTGTCATGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAGCTGAGGTTCAGTCTAGGGACTGGCTGCACTTTGTCATGTGG  695

seq1  ATGATGGGCACAGCAAAGCTGAACAAAGAGAACTGCATCCCCCTAATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGCACAGCAAAGCTGAACAAAGAGAACTGCATCCCCCTAATTCT  745

seq1  ACCACTCCTATGCCATCTCTGTGATGTTTGCCCCCGTGGGCGTCACCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCCTATGCCATCTCTGTGATGTTTGCCCCCGTGGGCGTCACCAGG  795

seq1  GTTTTTATTGTTGTTGTTTGTTTGTTTTTAACTTACCACTTTTTTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTGTTGTTGTTTGTTTGTTTTTAACTTACCACTTTTTTTTTTA  845

seq1  AAGACTTCCCCCCCATCTTTAAATCAGGTCACTTTTTCATCTTACCTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCCCCCCCATCTTTAAATCAGGTCACTTTTTCATCTTACCTAAG  895

seq1  CAGTAAGACAACATTCTCAAAATGATGGGTTTAATGGTCTACATGAAAA  949
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGACAACATTCTCAAAATGATGGGTTTAATGGTCTACATGAAAA  944