BAC Information

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BAC

Clone NameB6Ng01-028K05
Chromosome18 (Build37)
Map Location 15,918,894 - 16,093,973
singlet/doubletdoublet
Overlap geneLOC100040551
Upstream genePsma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012
Downstream geneEG225228, LOC100040202, Ppia-ps18_172.1, EG665509, Cdh2, LOC665519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028K05.bB6Ng01-028K05.g
ACCDH859065DH859066
length1,100968
definitionDH859065|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K05, 5' end.DH859066|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,918,894 - 15,920,001)(16,093,331 - 16,093,973)
sequence
gaattcacctttgctcttttccctaggactgacccacaatcagtccttca
ggacaagtcaataggttatctgaaaccttggactgcaaagacttcagaaa
tcctctggcttgagcagaggttgtgtttgcttgctccttttcctccgttc
atggttgatgagccctgtggccaagtgcttctaagtaccggatgagctat
gaaggactacagcagggagtttgtatgaagttgtcactgggaataactga
gacccagtagttctccggccatgcctgtcaaattcggacaagcaggagct
agcagcttgtgaaggaattttggaggaacaagactaaggtaatttaaaaa
caaatcattaaaattaaagcatactgaggtttaaaaattagctccaaata
ttatgatagcaattatcttgaccaaactcgggcaaaaaaaaaaaaaaaaa
aaaaaatcaagtgaacccatgtttgcttagtttgcagacaaacagcttct
ataaatcatcatcaacaacaacaaaaaaccaaacaatcaaaaaaaaaaaa
ccagcaaactttcttttaaagcattaaagagtgaaactgtcctgaatcga
cattagaactgtcttcacactgactgcctctgccgagtttggagtttgga
gattgtcgctaatctgggtgaatttaggtacacagaagaaacactgttac
agcactggccttctgactcctgttcctttaaaacaaaacctagtctatcc
tctctcccaaggattccactttcattttaaaaattacagcaaaacacata
ccatgaaatttgacattttacatgatttcagtgtcccattcgatgttgtt
acatatatttacactgtaaaatagatagatgtctagggctttttcatatt
atgaaacaaaaactcttcatctgtcaggcagtaaccccctttttcactcc
ctacagtccctattaggtactttgtactttctgcacctgcaagtttggct
gtttagatgtctgataggataggatcataaatattaaagagcactgttta
acaacaaaagacaataatctgatgacaagtgacaacctcagctgtctttg

gaattccaatatgacagagtatgctgatgggtgtggggagaggaatggct
agtatgcattgtgcttaacagagaggtagcaaggtgttcctgtagaagaa
agaatgggcattgcctctgctcatttcctgtttggcaattcctaaggtat
aaaagtaacttttattcacaagatataattgtcaccttgggagcttactg
ttgaataagttcaccctgtgtagtttttttctcaactctggctgactagt
tcaatacagctgttcaggctctaacttctctccaaaatgactgatccaat
ttgtttttttgcaacttctcactgaattgctttgcttggtctcaaactaa
ctctgacaatttgttctaatcttaaggcagctttttattctctggctcca
actgtctttgctgacctacatggcacaaattgcactggctgatctgattc
ccagcagactaaaactgactgaactgacagctctctcccttttctgctct
caaacagctttttttcctgcatcttaactctgactccttctgtcaaatat
ttctctgattcatcactttttctgcccctcagttagatatcattgtttgg
gcttaaaggtatgtactaaaggattctacccagagagattaaaggtatgt
actaagggtgtgtctgcattctagctggatcacagggacctagaatgttt
tgtatgtgaccagaacatacatgttgctgaattaaaattcatctatgcta
aggacagatctgtttcaggcagctcattctctgatcagttcatatttcag
ggaaactgattagacagtgctctaactactccaaggactgtggggttctc
agttacaggctctcagttatgaagcttgtccattttgagtttctagtttc
ttgactaagtcaatttctgggcagaaactacagaccctgctgtatgcaca
tggctctccattttcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_15918894_15920001
seq2: B6Ng01-028K05.b_45_1144

seq1  GAATTCACCTTTGCTCTTTTCCCTAGGACTGACCCACAATCAGTCCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTGCTCTTTTCCCTAGGACTGACCCACAATCAGTCCTTCA  50

seq1  GGACAAGTCAATAGGTTATCTGAAACCTTGGACTGCAAAGACTTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGTCAATAGGTTATCTGAAACCTTGGACTGCAAAGACTTCAGAAA  100

seq1  TCCTCTGGCTTGAGCAGAGGTTGTGTTTGCTTGCTCCTTTTCCTCCGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGCTTGAGCAGAGGTTGTGTTTGCTTGCTCCTTTTCCTCCGTTC  150

seq1  ATGGTTGATGAGCCCTGTGGCCAAGTGCTTCTAAGTACCGGATGAGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGATGAGCCCTGTGGCCAAGTGCTTCTAAGTACCGGATGAGCTAT  200

seq1  GAAGGACTACAGCAGGGAGTTTGTATGAAGTTGTCACTGGGAATAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACTACAGCAGGGAGTTTGTATGAAGTTGTCACTGGGAATAACTGA  250

seq1  GACCCAGTAGTTCTCCGGCCATGCCTGTCAAATTCGGACAAGCAGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTAGTTCTCCGGCCATGCCTGTCAAATTCGGACAAGCAGGAGCT  300

seq1  AGCAGCTTGTGAAGGAATTTTGGAGGAACAAGACTAAGGTAATTTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTGTGAAGGAATTTTGGAGGAACAAGACTAAGGTAATTTAAAAA  350

seq1  CAAATCATTAAAATTAAAGCATACTGAGGTTTAAAAATTAGCTCCAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATTAAAATTAAAGCATACTGAGGTTTAAAAATTAGCTCCAAATA  400

seq1  TTATGATAGCAATTATCTTGACCAAACTCGGGCAAAAAAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATAGCAATTATCTTGACCAAACTCGGGCAAAAAAAAAAAAAAAAA  450

seq1  AAAAAATCAAGTGAACCCATGTTTGCTTAGTTTGCAGACAAACAGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAAGTGAACCCATGTTTGCTTAGTTTGCAGACAAACAGCTTCT  500

seq1  ATAAATCATCATCAACAACAACAAAAAACCAAACAATCAAAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCATCATCAACAACAACAAAAAACCAAACAATCAAAAAAAAAAAA  550

seq1  CCAGCAAACTTTCTTTTAAAGCATTAAAGAGTGAAACTGTCCTGAATCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAACTTTCTTTTAAAGCATTAAAGAGTGAAACTGTCCTGAATCGA  600

seq1  CATTAGAACTGTCTTCACACTGACTGCCTCTGCCGAGTTTGGAGTTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAACTGTCTTCACACTGACTGCCTCTGCCGAGTTTGGAGTTTGGA  650

seq1  GATTGTCGCTAATCTGGGTGAATTTAGGTACACAGAAGAAACACTGTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCGCTAATCTGGGTGAATTTAGGTACACAGAAGAAACACTGTTAC  700

seq1  AGCACTGGCCTTCTGACTCCTGTTCCTTTAAAACAAAACCTAGTCTATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGCCTTCTGACTCCTGTTCCTTTAAAACAAAACCTAGTCTATCC  750

seq1  TCTCTCCCAAGGATTCCACTTTCATTTTAAAAATTACAGCAAAACACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCAAGGATTCCACTTTCATTTTAAAAATTACAGCAAAACACATA  800

seq1  CCATGAAATTTGACATTTTACATGATTTCAGTGTCCCATTCGATGTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAATTTGACATTTTACATGATTTCAGTGTCCCATTCGATGTTGTT  850

seq1  ACATATATTTACACTGTAAAATAGATAGATGTCTAGGGCTTTTTCATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATTTACACTGTAAAATAGATAGATGTCTAGGGCTTTTTCATATT  900

seq1  ATGAAACAAAAACTCTTCATCTGTCAGGCAGTTACCCCCTTTTTCACTCC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGAAACAAAAACTCTTCATCTGTCAGGCAGTAACCCCCTTTTTCACTCC  950

seq1  CTACAGTCCCTATTAGGTACTTTGTACTTTCTGCACCTGCAAGTTTGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCCCTATTAGGTACTTTGTACTTTCTGCACCTGCAAGTTTGGCT  1000

seq1  GTTTAGATGTCTGATAGGATTAGGATCCATAATATATAAAGAGCACTTGT  1050
      ||||||||||||||||||| |||||||   ||||| |||||||||||  |
seq2  GTTTAGATGTCTGATAGGA-TAGGATCATAAATAT-TAAAGAGCACTGTT  1048

seq1  TAACAACAAAAGACAAATAATCTGATGACAAAGTGGACAAACCTCAGGGC  1100
      |||||||||||||| |||||||||||||| |||| ||| |||||||  ||
seq2  TAACAACAAAAGAC-AATAATCTGATGAC-AAGT-GAC-AACCTCA--GC  1092

seq1  TGTCTTTG  1108
      ||||||||
seq2  TGTCTTTG  1100

seq1: chr18_16093331_16093973
seq2: B6Ng01-028K05.g_63_705 (reverse)

seq1  TTTAATCTCTCTGGGTAGAATCCTTTAGTACATACCTTTAAGCCCAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTCTCTGGGTAGAATCCTTTAGTACATACCTTTAAGCCCAAACA  50

seq1  ATGATATCTAACTGAGGGGCAGAAAAAGTGATGAATCAGAGAAATATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATCTAACTGAGGGGCAGAAAAAGTGATGAATCAGAGAAATATTTG  100

seq1  ACAGAAGGAGTCAGAGTTAAGATGCAGGAAAAAAAGCTGTTTGAGAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGAGTCAGAGTTAAGATGCAGGAAAAAAAGCTGTTTGAGAGCAG  150

seq1  AAAAGGGAGAGAGCTGTCAGTTCAGTCAGTTTTAGTCTGCTGGGAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAGAGAGCTGTCAGTTCAGTCAGTTTTAGTCTGCTGGGAATCAG  200

seq1  ATCAGCCAGTGCAATTTGTGCCATGTAGGTCAGCAAAGACAGTTGGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCAGTGCAATTTGTGCCATGTAGGTCAGCAAAGACAGTTGGAGCC  250

seq1  AGAGAATAAAAAGCTGCCTTAAGATTAGAACAAATTGTCAGAGTTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAAAAAGCTGCCTTAAGATTAGAACAAATTGTCAGAGTTAGTTT  300

seq1  GAGACCAAGCAAAGCAATTCAGTGAGAAGTTGCAAAAAAACAAATTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAAGCAAAGCAATTCAGTGAGAAGTTGCAAAAAAACAAATTGGAT  350

seq1  CAGTCATTTTGGAGAGAAGTTAGAGCCTGAACAGCTGTATTGAACTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTTTGGAGAGAAGTTAGAGCCTGAACAGCTGTATTGAACTAGTC  400

seq1  AGCCAGAGTTGAGAAAAAAACTACACAGGGTGAACTTATTCAACAGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGTTGAGAAAAAAACTACACAGGGTGAACTTATTCAACAGTAAG  450

seq1  CTCCCAAGGTGACAATTATATCTTGTGAATAAAAGTTACTTTTATACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGGTGACAATTATATCTTGTGAATAAAAGTTACTTTTATACCTT  500

seq1  AGGAATTGCCAAACAGGAAATGAGCAGAGGCAATGCCCATTCTTTCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGCCAAACAGGAAATGAGCAGAGGCAATGCCCATTCTTTCTTCT  550

seq1  ACAGGAACACCTTGCTACCTCTCTGTTAAGCACAATGCATACTAGCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACACCTTGCTACCTCTCTGTTAAGCACAATGCATACTAGCCATT  600

seq1  CCTCTCCCCACACCCATCAGCATACTCTGTCATATTGGAATTC  643
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCACACCCATCAGCATACTCTGTCATATTGGAATTC  643