BAC Information

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BAC

Clone NameB6Ng01-028P02
Chromosome18 (Build37)
Map Location 80,493,601 - 80,601,804
singlet/doubletdoublet
Overlap geneKcng2, D330025C20Rik
Upstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1
Downstream geneCtdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028P02.bB6Ng01-028P02.g
ACCDH859281DH859282
length1,0911,052
definitionDH859281|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P02, 5' end.DH859282|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,600,698 - 80,601,804)(80,493,601 - 80,494,658)
sequence
gaattccatgccccgccccaccaaccatgcacactcaaattcccagttct
cacctgtttgtctaggtggagttgaaattatctcatcaaccaaaccttta
cactctaaggagcattcagagtcacaacaggaggttttgattctaatttc
ctcctgagactcagctctctgaagtggttttcttataaataaaccaaatt
gctcaccttcagggaatgctacagtaacggttaatcttcattctcaacta
gactgaatttataaccacctagaagatgcagaggctcgtttggtagggtc
tgtgggggagtttttcataagaaaggtttaactacagagagaagactcgc
cctgaatgtaggctggcgtcctagacttaaccaaagagagataatgctaa
ctgaccaaaagcatctctcagccccaccggtgccaatgcaatgggaccag
tgccccacactcctacccatgcagccagagccgctctgaccaccgcacct
tccctgagcgttgggatggaccctcagtgcccaggtgccaatccattttg
aaaactgagaaacatgtctcatctctccttggcaacggtccccctgcggt
gtgactgctggacaggttgggagactttgctgcccaccctcagggttgtg
ggagcctgagcactaaccttcatcaaaaacagatggtgtgcccctcctat
ttgaacatcacaacagaatgggtctggtcagatgaagatcgtacacactt
ctgccagcaaacggggccgacagtggtgagcagttccacaaggcagggct
gcctgtgatcctaagcttgactgcatctggaatccactagaacccaaacg
ctgggtccacctgggagggattcttcttgattggatcgtttgagaacgga
agatgatcttccctaaatctggctcatgcctgccttctgccagcttgccc
tcactctccctggagaaggtcatctagctgctgagtgttctccactggca
tgaaagcctactcttcggagtcagctgaaacatccagcttgtgggctgac
aatcacagtccgcctttcttaacagctatgtgaactaggca
gaattctagaatgataaaacagaaagagacttgggaagaaagtctgaagc
aagcctggagaccagagtccaaggccaggaggttaaacagcagtgagccc
acacagcggtccagacagccctacattagtgttccacgatgtccaagtat
taacttgtctgagttattaacaccaaccatgacaaaacaagagtgaagga
gatacttctgagcgacacaaaacccagagtcaccttcagaaaactataga
aaaacagggtctcgggtctgccttctaaccccagcccttgggagatggaa
gcaggagaatcaggaattcaagcccattttcaactatgtatgcagttgag
gctagactcagctacactagtccctctcagagacaaaagtgaaaacagca
acaatagagtttaaagtaaaagagaagccagcagcagacagaagacttag
aaaccatggtggaggggggctctgagacagctcagcaggtacacactagc
caccaagacttaaaacccaagtttgattcctaagagctacatggtggcag
gagagaacccactctgcaaattaactccacaggtggacattggcacatgc
acgcccttctaatagatagatatatgacataatttaaaaaaatcaagatg
gagaaaggtttttgctagggaagcagggctgacttagcacctgaaactga
ttaattcacaataaaagcatcataaaaaataagatcagataatcaggtct
tgttactcctaacaaggagttctaaatgttcaagccatgacagactcctc
ccatccccccaaaaaatctagtttagaaaggaaggaataaccctgtgttc
acaggtgaaatgaatttgtatacagaaaagccctgagaatccactaaagt
aacatattagagctgagtaactaacttagtatattgaaggacagatacat
gaaagtcggttttatctctcgataaacttgtataaataatatgaaatgaa
aatcccattcaaataccatgaaagtgtacaatagctcatacatacataac
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_80600698_80601804
seq2: B6Ng01-028P02.b_43_1133 (reverse)

seq1  TGCCTAGTTCCAACAATAGCTGTTAAGGAAAGGCCGAGAACCTGTTGATT  50
      ||||||||||  || ||||||||||| ||||||| ||    ||| |||||
seq2  TGCCTAGTTC--AC-ATAGCTGTTAA-GAAAGGCGGA----CTG-TGATT  41

seq1  GTCCAGCCCACAAGGCTGGATGTTCTCAGCTGGACTCCCGAAGAAGTAGG  100
      || |||||||||| |||||||||| |||||| |||| |||||| ||||||
seq2  GT-CAGCCCACAA-GCTGGATGTT-TCAGCT-GACT-CCGAAG-AGTAGG  85

seq1  CTTTCATGCCAGTGGAGGAACACCTCAGCAGCTAGATGACC-TCTCCAGG  149
      |||||||||||||||| ||||| |||||||||||||||||| ||||||||
seq2  CTTTCATGCCAGTGGA-GAACA-CTCAGCAGCTAGATGACCTTCTCCAGG  133

seq1  GAGAGTGAGGGCAAGCTGGCAGAAGGCAGGCATGAGCCAGATTTAGGGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAGGGCAAGCTGGCAGAAGGCAGGCATGAGCCAGATTTAGGGAA  183

seq1  GATCATCTTCCGTTCTCAAACGATCCAATCAAGAAGAATCCCTCCCAGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCTTCCGTTCTCAAACGATCCAATCAAGAAGAATCCCTCCCAGGT  233

seq1  GGACCCAGCGTTTGGGTTCTAGTGGATTCCAGATGCAGTCAAGCTTAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGCGTTTGGGTTCTAGTGGATTCCAGATGCAGTCAAGCTTAGGA  283

seq1  TCACAGGCAGCCCTGCCTTGTGGAACTGCTCACCACTGTCGGCCCCGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCAGCCCTGCCTTGTGGAACTGCTCACCACTGTCGGCCCCGTTT  333

seq1  GCTGGCAGAAGTGTGTACGATCTTCATCTGACCAGACCCATTCTGTTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAGAAGTGTGTACGATCTTCATCTGACCAGACCCATTCTGTTGTG  383

seq1  ATGTTCAAATAGGAGGGGCACACCATCTGTTTTTGATGAAGGTTAGTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAAATAGGAGGGGCACACCATCTGTTTTTGATGAAGGTTAGTGCT  433

seq1  CAGGCTCCCACAACCCTGAGGGTGGGCAGCAAAGTCTCCCAACCTGTCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCCACAACCCTGAGGGTGGGCAGCAAAGTCTCCCAACCTGTCCA  483

seq1  GCAGTCACACCGCAGGGGGACCGTTGCCAAGGAGAGATGAGACATGTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCACACCGCAGGGGGACCGTTGCCAAGGAGAGATGAGACATGTTTC  533

seq1  TCAGTTTTCAAAATGGATTGGCACCTGGGCACTGAGGGTCCATCCCAACG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTCAAAATGGATTGGCACCTGGGCACTGAGGGTCCATCCCAACG  583

seq1  CTCAGGGAAGGTGCGGTGGTCAGAGCGGCTCTGGCTGCATGGGTAGGAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAAGGTGCGGTGGTCAGAGCGGCTCTGGCTGCATGGGTAGGAGT  633

seq1  GTGGGGCACTGGTCCCATTGCATTGGCACCGGTGGGGCTGAGAGATGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCACTGGTCCCATTGCATTGGCACCGGTGGGGCTGAGAGATGCTT  683

seq1  TTGGTCAGTTAGCATTATCTCTCTTTGGTTAAGTCTAGGACGCCAGCCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAGTTAGCATTATCTCTCTTTGGTTAAGTCTAGGACGCCAGCCTA  733

seq1  CATTCAGGGCGAGTCTTCTCTCTGTAGTTAAACCTTTCTTATGAAAAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGGCGAGTCTTCTCTCTGTAGTTAAACCTTTCTTATGAAAAACT  783

seq1  CCCCCACAGACCCTACCAAACGAGCCTCTGCATCTTCTAGGTGGTTATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAGACCCTACCAAACGAGCCTCTGCATCTTCTAGGTGGTTATAA  833

seq1  ATTCAGTCTAGTTGAGAATGAAGATTAACCGTTACTGTAGCATTCCCTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCTAGTTGAGAATGAAGATTAACCGTTACTGTAGCATTCCCTGA  883

seq1  AGGTGAGCAATTTGGTTTATTTATAAGAAAACCACTTCAGAGAGCTGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCAATTTGGTTTATTTATAAGAAAACCACTTCAGAGAGCTGAGT  933

seq1  CTCAGGAGGAAATTAGAATCAAAACCTCCTGTTGTGACTCTGAATGCTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGAAATTAGAATCAAAACCTCCTGTTGTGACTCTGAATGCTCC  983

seq1  TTAGAGTGTAAAGGTTTGGTTGATGAGATAATTTCAACTCCACCTAGACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTGTAAAGGTTTGGTTGATGAGATAATTTCAACTCCACCTAGACA  1033

seq1  AACAGGTGAGAACTGGGAATTTGAGTGTGCATGGTTGGTGGGGCGGGGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGAGAACTGGGAATTTGAGTGTGCATGGTTGGTGGGGCGGGGCA  1083

seq1  TGGAATTC  1107
      ||||||||
seq2  TGGAATTC  1091

seq1: chr18_80493601_80494658
seq2: B6Ng01-028P02.g_65_1116

seq1  GAATTCTAGAATGATAAAACAGAAAGAGACTTGGGAAGAAAGTCTGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAATGATAAAACAGAAAGAGACTTGGGAAGAAAGTCTGAAGC  50

seq1  AAGCCTGGAGACCAGAGTCCAAGGCCAGGAGGTTAAACAGCAGTGAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGAGACCAGAGTCCAAGGCCAGGAGGTTAAACAGCAGTGAGCCC  100

seq1  ACACAGCGGTCCAGACAGCCCTACATTAGTGTTCCACGATGTCCAAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCGGTCCAGACAGCCCTACATTAGTGTTCCACGATGTCCAAGTAT  150

seq1  TAACTTGTCTGAGTTATTAACACCAACCATGACAAAACAAGAGTGAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTCTGAGTTATTAACACCAACCATGACAAAACAAGAGTGAAGGA  200

seq1  GATACTTCTGAGCGACACAAAACCCAGAGTCACCTTCAGAAAACTATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTCTGAGCGACACAAAACCCAGAGTCACCTTCAGAAAACTATAGA  250

seq1  AAAACAGGGTCTCGGGTCTGCCTTCTAACCCCAGCCCTTGGGAGATGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGGTCTCGGGTCTGCCTTCTAACCCCAGCCCTTGGGAGATGGAA  300

seq1  GCAGGAGAATCAGGAATTCAAGCCCATTTTCAACTATGTATGCAGTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAATCAGGAATTCAAGCCCATTTTCAACTATGTATGCAGTTGAG  350

seq1  GCTAGACTCAGCTACACTAGTCCCTCTCAGAGACAAAAGTGAAAACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACTCAGCTACACTAGTCCCTCTCAGAGACAAAAGTGAAAACAGCA  400

seq1  ACAATAGAGTTTAAAGTAAAAGAGAAGCCAGCAGCAGACAGAAGACTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGAGTTTAAAGTAAAAGAGAAGCCAGCAGCAGACAGAAGACTTAG  450

seq1  AAACCATGGTGGAGGGGGGCTCTGAGACAGCTCAGCAGGTACACACTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGGTGGAGGGGGGCTCTGAGACAGCTCAGCAGGTACACACTAGC  500

seq1  CACCAAGACTTAAAACCCAAGTTTGATTCCTAAGAGCTACATGGTGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGACTTAAAACCCAAGTTTGATTCCTAAGAGCTACATGGTGGCAG  550

seq1  GAGAGAACCCACTCTGCAAATTAACTCCACAGGTGGACATTGGCACATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACCCACTCTGCAAATTAACTCCACAGGTGGACATTGGCACATGC  600

seq1  ACGCCCTTCTAATAGATAGATATATGACATAATTTAAAAAAATCAAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTTCTAATAGATAGATATATGACATAATTTAAAAAAATCAAGATG  650

seq1  GAGAAAGGTTTTTGCTAGGGAAGCAGGGCTGACTTAGCACCTGAAACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGTTTTTGCTAGGGAAGCAGGGCTGACTTAGCACCTGAAACTGA  700

seq1  TTAATTCACAATAAAAGCATCATAAAAAATAAGATCAGATAATCAGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCACAATAAAAGCATCATAAAAAATAAGATCAGATAATCAGGTCT  750

seq1  TGTTACTCCTAACAAGGAGTTCTAAATGTTCAAGCCATGACAGACTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTCCTAACAAGGAGTTCTAAATGTTCAAGCCATGACAGACTCCTC  800

seq1  CCATCCCCCCAAAAAATCTAGTTTAGAAAGGAAGGAATAACCCTGTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCCCAAAAAATCTAGTTTAGAAAGGAAGGAATAACCCTGTGTTC  850

seq1  ACAGGTGAAATGAATTTGTATACAGAAAAGCCCTGAGAATCCACTAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGAAATGAATTTGTATACAGAAAAGCCCTGAGAATCCACTAAAGT  900

seq1  AACATATTAGAGCTGAGTAACTAACTTAGTAATATTGAAGGACAGATACA  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AACATATTAGAGCTGAGTAACTAACTTAGT-ATATTGAAGGACAGATACA  949

seq1  TGAAAGTCGGTTTTATCTCTCGATAAACTTGTAATAAATAATATGAAAAT  1000
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  TGAAAGTCGGTTTTATCTCTCGATAAACTTGT-ATAAATAATATG-AAAT  997

seq1  GAAAATCCCATTCAAAATACCATGAAAGTGTACAAATAGCTCATACATAC  1050
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  GAAAATCCCATTC-AAATACCATGAAAGTGTAC-AATAGCTCATACATAC  1045

seq1  ATATACTC  1058
      ||| ||||
seq2  ATA-ACTC  1052