BAC Information

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BAC

Clone NameB6Ng01-030D05
Chromosome18 (Build37)
Map Location 50,558,155 - 50,651,756
singlet/doubletdoublet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
Downstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030D05.bB6Ng01-030D05.g
ACCDH860176DH860177
length1,1821,038
definitionDH860176|Mus musculus domesticus DNA, BAC clone: B6Ng01-030D05, 5' end.DH860177|Mus musculus domesticus DNA, BAC clone: B6Ng01-030D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,650,552 - 50,651,756)(50,558,155 - 50,559,217)
sequence
gaattcctgggacagttttacagaaacaggttaaagagagagcaactgag
acacaggtaaagacagagtgagtcagagaatgagaaggagatagaaactt
taaacagattgccagagttagtttgaggccatgtagagcaattcagtcag
aggccaagagagaagccaagttgaatcagtcacttggagaagagtttgag
ccagaacagctgagttgaaccagccagccagagctcaggaagaactagaa
agggtaatattattcagcagtaaagatcagaagcagaaaaaaaaatctag
gcctagagtagattatatggaggctagaagtttctaggactaggcctatt
agcagactaaggcagtaagcctcagagatggtaattgtttctggtgaata
aaagttactgttacactggagtaagggaataaatttataacagttgagca
taaaagttacctctgaatgttaaggaagtttaggcaaatatataaacatg
agctatgactttatacctaaatcataaatgatacaggaatttgggcatgt
ctttggtgccttgcttggaaaactagggccctagaaactttatggccacc
aaagtcaccaataaatttaaagaataaaatttatggaccacagaaggcaa
gttttcaagagcatcttatcatgaattcataggtgggagatgacggagag
ccttgccttttgatttaagcatgaagattagattagccacatgatagaca
aacaacatgacagggaggagatgagaaaaagagtatatatattaaagccc
aaagtatcatagaaagcataaatctttctgctttctgagtccagactcac
gctcacagactcaacaaagcctgatagtggccctggagagactgccctta
gaacccagagttctgagaaggagaatacattatctcatgaaagacaaatt
attctttccatccctttatcgtggcttaatgtaaactcatcttcatcaag
atggtctcatggccattaacctacccactggatattctagggatgacaca
attgtacattttcacctcgaagaagatgccattcatttttggctagaaga
agcactttcttatgacttcatgccactatatgtcaggaatgaacctatga
ccaaaagaacaaccctccctttctataaccta
gaattcaagaatgcaaaggatgggagcacagagacctgatcactagaagt
gggaggagtttatggaggaggaaccaaacttgctttgtataaaaggaacc
tctaaatagcagggaagaaagagtttggatataaaaaataagatggagaa
gcagaaatggacatcggattctgtctttgcagacgccctccgcgtaggtt
gcaataggaagctcatttgtcctcctcgttgggagatttgtcatttactg
tgttatagcaactgctcttcactcagtgtctctaatttaagagtaaagca
tataataccaagtgtgtagaaataatttcctttaggtagcagtggagaga
cagagaaaagatgccaaactactgttcacactgactggtggcatccattt
atactgcttatctgcctttatcagacacctttgttctcagaacctatgtt
ggccttagcctggctaggaagctctcaaccatcagcctgttcactttcat
tgtgtgaaaactgacccaccaataatacagaatacataaacgttcagatt
tcatagacttttgtcccagtgatcaatagttgccacaattcactgagcaa
ttagtaaaataaccagaaaaaggcatcagacaatgtaatctcatctttgg
ggaaaaggtggtaaaagaaaacaatcaaaccaagaaatggaaagtgaaat
aatctttagaattggagtgtagtgaaatttacagcatggacagggtctca
catttaacatgctaaggatatatcaatcagcaaaataatctaatacccac
tagctttgagtccttaagagaagccactatacttcttcagaattttactt
attaaacttgtttcatgttacaatttatgagagaaatactgcttattaca
gatgagaaatcaaccattttgcctgatacaacctagttagagacagacta
aatttcccaatcctaaccacctcgagcattccgtcagtataagaatcctc
tgtactctacgttcagcactgaatgctcaagttgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50650552_50651756
seq2: B6Ng01-030D05.b_45_1226 (reverse)

seq1  TAGGTTGTATAGAAAGAGGAGAGTTTGTCTTTTGTGGTCCATTAGTGTCA  50
      |||||  ||||||||| |||| |||  |||||  |||||   |||  |||
seq2  TAGGT--TATAGAAAG-GGAGGGTTGTTCTTT--TGGTC--ATAGGTTCA  43

seq1  TTCCTGACATTATAGTGGCATTGAAGTTCCATTAAGGAAAGTTGCTTCCT  100
      ||||||||| |||||||||| ||||||  |||  | ||||| ||||| ||
seq2  TTCCTGACA-TATAGTGGCA-TGAAGT--CAT--AAGAAAG-TGCTT-CT  85

seq1  TCTAGCCAAAAATGAATGGCATCTTCTTCGAGGTGAAAATGTACAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCAAAAATGAATGGCATCTTCTTCGAGGTGAAAATGTACAATTGT  135

seq1  GTCATCCCTTAAGAATTAATCCAGTTGGGTAGGTTAATGGCCATGAGACC  200
      |||||||||  |||||  |||||| |||||||||||||||||||||||||
seq2  GTCATCCCT--AGAAT--ATCCAG-TGGGTAGGTTAATGGCCATGAGACC  180

seq1  ATCTTTGATGAAGATGAGTTTACATTAAGCCACGATAAAGGGATGGAAAG  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATC-TTGATGAAGATGAGTTTACATTAAGCCACGATAAAGGGATGGAAAG  229

seq1  AATAATTTGTTCTTTCATGAGATAATGTATTCTTCCTTCTCAGAACTCTG  300
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  AATAATTTG-TCTTTCATGAGATAATGTATTC-TCCTTCTCAGAACTCTG  277

seq1  GGTTCTAAGGGCAGTCTCTCCAGGGCCACTATCAGGCTTTGTTGAGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAAGGGCAGTCTCTCCAGGGCCACTATCAGGCTTTGTTGAGTCTG  327

seq1  TGAGCCTGAGTCTGGACTCAGAAAGCAGAAAGATTTATGCTTTCTATGAT  400
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGTGAGTCTGGACTCAGAAAGCAGAAAGATTTATGCTTTCTATGAT  377

seq1  ACTTTGGGCTTTAATATATATACTCTTTTTCTCATCTCCTCCCTGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGCTTTAATATATATACTCTTTTTCTCATCTCCTCCCTGTCATG  427

seq1  TTGTTTGTCTATCATGTGGCTAATCTAATCTTCATGCTTAAATCAAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTCTATCATGTGGCTAATCTAATCTTCATGCTTAAATCAAAAGG  477

seq1  CAAGGCTCTCCGTCATCTCCCACCTATGAATTCATGATAAGATGCTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCTCCGTCATCTCCCACCTATGAATTCATGATAAGATGCTCTTG  527

seq1  AAAACTTGCCTTCTGTGGTCCATAAATTTTATTCTTTAAATTTATTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGCCTTCTGTGGTCCATAAATTTTATTCTTTAAATTTATTGGTG  577

seq1  ACTTTGGTGGCCATAAAGTTTCTAGGGCCCTAGTTTTCCAAGCAAGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTGGCCATAAAGTTTCTAGGGCCCTAGTTTTCCAAGCAAGGCAC  627

seq1  CAAAGACATGCCCAAATTCCTGTATCATTTATGATTTAGGTATAAAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACATGCCCAAATTCCTGTATCATTTATGATTTAGGTATAAAGTCA  677

seq1  TAGCTCATGTTTATATATTTGCCTAAACTTCCTTAACATTCAGAGGTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATGTTTATATATTTGCCTAAACTTCCTTAACATTCAGAGGTAAC  727

seq1  TTTTATGCTCAACTGTTATAAATTTATTCCCTTACTCCAGTGTAACAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTCAACTGTTATAAATTTATTCCCTTACTCCAGTGTAACAGTA  777

seq1  ACTTTTATTCACCAGAAACAATTACCATCTCTGAGGCTTACTGCCTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTCACCAGAAACAATTACCATCTCTGAGGCTTACTGCCTTAGT  827

seq1  CTGCTAATAGGCCTAGTCCTAGAAACTTCTAGCCTCCATATAATCTACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATAGGCCTAGTCCTAGAAACTTCTAGCCTCCATATAATCTACTC  877

seq1  TAGGCCTAGATTTTTTTTTCTGCTTCTGATCTTTACTGCTGAATAATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTAGATTTTTTTTTCTGCTTCTGATCTTTACTGCTGAATAATATT  927

seq1  ACCCTTTCTAGTTCTTCCTGAGCTCTGGCTGGCTGGTTCAACTCAGCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCTAGTTCTTCCTGAGCTCTGGCTGGCTGGTTCAACTCAGCTGT  977

seq1  TCTGGCTCAAACTCTTCTCCAAGTGACTGATTCAACTTGGCTTCTCTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCAAACTCTTCTCCAAGTGACTGATTCAACTTGGCTTCTCTCTT  1027

seq1  GGCCTCTGACTGAATTGCTCTACATGGCCTCAAACTAACTCTGGCAATCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGACTGAATTGCTCTACATGGCCTCAAACTAACTCTGGCAATCT  1077

seq1  GTTTAAAGTTTCTATCTCCTTCTCATTCTCTGACTCACTCTGTCTTTACC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGTTTCTATCTCCTTCTCATTCTCTGACTCACTCTGTCTTTACC  1127

seq1  TGTGTCTCAGTTGCTCTCTCTTTAACCTGTTTCTGTAAAACTGTCCCAGG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCAGTTGCTCTCTCTTTAACCTGTTTCTGTAAAACTGTCCCAGG  1177

seq1  AATTC  1205
      |||||
seq2  AATTC  1182

seq1: chr18_50558155_50559217
seq2: B6Ng01-030D05.g_68_1105

seq1  GAATTCAAGAATGCAAAGGATGGGAGCACAGAGACCTGATCACTAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAATGCAAAGGATGGGAGCACAGAGACCTGATCACTAGAAGT  50

seq1  GGGAGGAGTTTATGGAGGAGGAACCAAACTTGCTTTGTATAAAAGGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGTTTATGGAGGAGGAACCAAACTTGCTTTGTATAAAAGGAACC  100

seq1  TCTAAATAGCAGGGAAGAAAGAGTTTGGATATAAAAAATAAGATGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAGCAGGGAAGAAAGAGTTTGGATATAAAAAATAAGATGGAGAA  150

seq1  GCAGAAATGGACATCGGATTCTGTCTTTGCAGACGCCCTCCGCGTAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATGGACATCGGATTCTGTCTTTGCAGACGCCCTCCGCGTAGGTT  200

seq1  GCAATAGGAAGCTCATTTGTCCTCCTCGTTGGGAGATTTGTCATTTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGGAAGCTCATTTGTCCTCCTCGTTGGGAGATTTGTCATTTACTG  250

seq1  TGTTATAGCAACTGCTCTTCACTCAGTGTCTCTAATTTAAGAGTAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAGCAACTGCTCTTCACTCAGTGTCTCTAATTTAAGAGTAAAGCA  300

seq1  TATAATACCAAGTGTGTAGAAATAATTTCCTTTAGGTAGCAGTGGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACCAAGTGTGTAGAAATAATTTCCTTTAGGTAGCAGTGGAGAGA  350

seq1  CAGAGAAAAGATGCCAAACTACTGTTCACACTGACTGGTGGCATCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAAGATGCCAAACTACTGTTCACACTGACTGGTGGCATCCATTT  400

seq1  ATACTGCTTATCTGCCTTTATCAGACACCTTTGTTCTCAGAACCTATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTTATCTGCCTTTATCAGACACCTTTGTTCTCAGAACCTATGTT  450

seq1  GGCCTTAGCCTGGCTAGGAAGCTCTCAACCATCAGCCTGTTCACTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAGCCTGGCTAGGAAGCTCTCAACCATCAGCCTGTTCACTTTCAT  500

seq1  TGTGTGAAAACTGACCCACCAATAATACAGAATACATAAACGTTCAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAAAACTGACCCACCAATAATACAGAATACATAAACGTTCAGATT  550

seq1  TCATAGACTTTTGTCCCAGTGATCAATAGTTGCCACAATTCACTGAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGACTTTTGTCCCAGTGATCAATAGTTGCCACAATTCACTGAGCAA  600

seq1  TTAGTAAAATAACCAGAAAAAGGCATCAGACAATGTAATCTCATCTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAAATAACCAGAAAAAGGCATCAGACAATGTAATCTCATCTTTGG  650

seq1  GGAAAAGGTGGTAAAAGAAAACAATCAAACCAAGAAATGGAAAGTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGTGGTAAAAGAAAACAATCAAACCAAGAAATGGAAAGTGAAAT  700

seq1  AATCTTTAGAATTGGAGTGTAGTGAAATTTACAGCATGGACAGGGTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAGAATTGGAGTGTAGTGAAATTTACAGCATGGACAGGGTCTCA  750

seq1  CATTTAACATGCTAAGGATATATCAATCAGCAAAATAATCTAATACCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACATGCTAAGGATATATCAATCAGCAAAATAATCTAATACCCAC  800

seq1  TAGCTTTGAGTCCTTAAGAGAAGCCACTATACTTCTTCAGAATTTTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGAGTCCTTAAGAGAAGCCACTATACTTCTTCAGAATTTTACTT  850

seq1  ATTAAACTTGTTTCATGTTACAATTTTATGAGAGAAAATACTGCTTATTA  900
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  ATTAAACTTGTTTCATGTTACAA-TTTATGAGAG-AAATACTGCTTATTA  898

seq1  CAGATGAAGAAATCAACCATTTTGCCTGATACAACCTAGTTAGAGACAGA  950
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGATG-AGAAATCAACCATTTTGCCTGATACAACCTAGTTAGAGACAG-  946

seq1  ACTAAATTTCCCAATCCTAACCACCTCGAAGCAATTCCGTTCAGTTATAA  1000
      |||||||||||||||||||||||||||| ||| |||||| |||| |||||
seq2  ACTAAATTTCCCAATCCTAACCACCTCG-AGC-ATTCCG-TCAG-TATAA  992

seq1  GAATCCTCTGTACTCTACGTTCAGCCCACTGAATGCTCAAAGTTTGGGGA  1050
      ||||||||||||||||||||||||  |||||||||||||           
seq2  GAATCCTCTGTACTCTACGTTCAG--CACTGAATGCTCA-----------  1029

seq1  GGGGAGTTGGGAG  1063
          |||||||||
seq2  ----AGTTGGGAG  1038