BAC Information

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BAC

Clone NameB6Ng01-032C16
Chromosome18 (Build37)
Map Location 25,992,114 - 26,142,822
singlet/doubletdoublet
Overlap geneLOC100041263
Upstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916
Downstream geneLOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032C16.bB6Ng01-032C16.g
ACCDH861581DH861582
length1,0831,086
definitionDH861581|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C16, 5' end.DH861582|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,992,114 - 25,993,197)(26,141,723 - 26,142,822)
sequence
gaattctcacctctccagacatttaacttccggtcacatggagaagagca
tctgcagcagcaaccattttaaaatattgttcctagacatccaaaattca
tttaactttaaagaaccccaagttataactatatgttctcagccaggagt
ggtagcttgtgcctttaatcacagtactcaggaggcagccaggagggtct
ctgtgggttcaaggccaaggccaacctggcctacatagtgagttttagga
cagccagatctatgtagaatgactctatctaaagcaagaacataaccaaa
aaacccaagcctaaataaacgataaattctctttcatttcatgtatagtt
aatattcattctttgagtcagtgaagtaaaatagagatgtgagtccccca
tcagatgaaatcaagacctggtagatattacaactagagacagggtttgt
tgaaatgctgtttgaggagtcactagcatttgacacctgtagctggacta
ttggctactttttttgagattttatggctatcttctttcgaatctttatt
ccacagttctgcacccctccaaacacttggtatgaaagaaagaagattag
aggggaattggcatgtagatgtttttagactacttcctgctaattatggg
ccttgagtttcctggtgaaagtttgatcttcatttttcagatttctccaa
ccagcaaccaaatagcaacagcagcaggggtagcatcagtagttagcctg
tcaggactctggcatttttataccctctcaattgtccccagaattccaaa
tgtaaactatctttcagctagcaaaattacactctgccagagcatgagac
aaatcatagttacctgctgtggacaatctaaagcagccccaacttcacac
ctgggattaaaatttacataaacatttctgtgttttcaagcattaaaaat
ttcactacagactcatacattattcacagagcttccaattcagtgtcact
ataacaaagaggctggggacatggtgccttatgatgatagtcaccaagtg
aaaaggatttatggctatggtcatgaccttctt
gaattctagaatctgttcttgagctcagacagggctcatattcattcttt
gcctctctctgacacaatgacagccctttctcatcaccaatctggcctct
cttgaaaagagtcatccctcttcctttatcaaaagactggaagtacactg
gggaaaagcttgttgtttcattactggaatcctggcattccagcagcctg
cctgtttagggcagcttgtcctaatttctcaccaggtttgcttgtttgct
tcttgctatgttgtccaagttaactttctagtgcaatggcaaacatcata
aacaaaagtcacttaggaaaagggggtttatcaggtttatttgtaaagtc
cacattacagtctgttattgggggaagtcagggctggaactcaagcagag
ttcttatgcagagatcatagaggaatgctgctatggcttactccggctgc
tctcttaaaatgctcaggacccccagcccaagagagccaccacccatagt
gggctgcgatctccaacatcaaaaaaaaaaaaaatgtcccacagacttgc
ttatagctcaatctaatggaggaattttcttaattgcggttcccccttct
cggatggttctgcttgtatctgcttcacaaaacaaagcaaaaaccaccaa
accaaaacacaacaactcttatataattaaataattttattttccaaaat
tagactgaaaaaaaagaggaaatgatgaggagagaactaagaataccaag
caataaatttatcttagtaagaatccgcattgagaagaatttcccaccag
ttttcatgagctctagagctgaggtaaaaattaactgtatagatgaacct
gaatgagaaaaaagcaggcaaagcttgaaaaggttgtctcaccccctctg
tgggaaaggctacttgtctatgactgccctcaagcttgctattgtatagc
aatatttccccaacatatattcttcttcctaatcttccacgtccctctct
acttccactacccctaaccccgcatcaattctcttcttcattaaaaaaga
actagctcttagggacacactacatgacaaaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_25992114_25993197
seq2: B6Ng01-032C16.b_45_1127

seq1  GAATTCTCACCTCTCCAGACATTTAACTT-TGGTCACATGGAGAAGAGCA  49
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  GAATTCTCACCTCTCCAGACATTTAACTTCCGGTCACATGGAGAAGAGCA  50

seq1  TCTGCAGCAGCAACCATTTTAAAATATTGTTCCTAGACATCCAAAATTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCAGCAACCATTTTAAAATATTGTTCCTAGACATCCAAAATTCA  100

seq1  TTTAACTTTAAAGAACCCCAAGTTATAACTATATGTTCTCAGCCAGGAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTTAAAGAACCCCAAGTTATAACTATATGTTCTCAGCCAGGAGT  150

seq1  GGTAGCTTGTGCCTTTAATCACAGTACTCAGGAGGCAGCCAGGAGGGTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTTGTGCCTTTAATCACAGTACTCAGGAGGCAGCCAGGAGGGTCT  200

seq1  CTGTGGGTTCAAGGCCAAGGCCAACCTGGCCTACATAGTGAGTTTTAGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTTCAAGGCCAAGGCCAACCTGGCCTACATAGTGAGTTTTAGGA  250

seq1  CAGCCAGATCTATGTAGAATGACTCTATCTAAAGCAAGAACATAACCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGATCTATGTAGAATGACTCTATCTAAAGCAAGAACATAACCAAA  300

seq1  AAACCCAAGCCTAAATAAACGATAAATTCTCTTTCATTTCATGTATAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAGCCTAAATAAACGATAAATTCTCTTTCATTTCATGTATAGTT  350

seq1  AATATTCATTCTTTGAGTCAGTGAAGTAAAATAGAGATGTGAGTCCCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATTCTTTGAGTCAGTGAAGTAAAATAGAGATGTGAGTCCCCCA  400

seq1  TCAGATGAAATCAAGACCTGGTAGATATTACAACTAGAGACAGGGTTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAAATCAAGACCTGGTAGATATTACAACTAGAGACAGGGTTTGT  450

seq1  TGAAATGCTGTTTGAGGAGTCACTAGCATTTGACACCTGTAGCTGGACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCTGTTTGAGGAGTCACTAGCATTTGACACCTGTAGCTGGACTA  500

seq1  TTGGCTACTTTTTTTGAGATTTTATGGCTATCTTCTTTCGAATCTTTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTACTTTTTTTGAGATTTTATGGCTATCTTCTTTCGAATCTTTATT  550

seq1  CCACAGTTCTGCACCCCTCCAAACACTTGGTATGAAAGAAAGAAGATTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTCTGCACCCCTCCAAACACTTGGTATGAAAGAAAGAAGATTAG  600

seq1  AGGGGAATTGGCATGTAGATGTTTTTAGACTACTTCCTGCTAATTATGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATTGGCATGTAGATGTTTTTAGACTACTTCCTGCTAATTATGGG  650

seq1  CCTTGAGTTTCCTGGTGAAAGTTTGATCTTCA-TTTTCAGATTTCTCCAA  698
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTTGAGTTTCCTGGTGAAAGTTTGATCTTCATTTTTCAGATTTCTCCAA  700

seq1  CCAGCAACCAAATAGCAACAGCAGCAGGGGTAGCATCAGTAGTTAGCCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCAGCAACCAAATAGCAACAGCAGCAGGGGTAGCATCAGTAGTTAGCCTG  750

seq1  TCAGGACTCTGGCATTTTTATACCCTCTCAATTGTCCCCAGAATTCCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTCTGGCATTTTTATACCCTCTCAATTGTCCCCAGAATTCCAAA  800

seq1  TGTAAACTATC-TTCAGCTAGCAAAATTACACTCTGCCAGAGCATGAGAC  847
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTATCTTTCAGCTAGCAAAATTACACTCTGCCAGAGCATGAGAC  850

seq1  AAATCATAGTTACCTGCTGTGGACAATCTAAAGCAGCCCCACACTTCACA  897
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAATCATAGTTACCTGCTGTGGACAATCTAAAGCAGCCCCA-ACTTCACA  899

seq1  CCTGGGATTAAAATTTACAT-AACATTTCTGTGTTTTTCAAGCATTCAAA  946
      |||||||||||||||||||| |||||||||||| |||||||||||| |||
seq2  CCTGGGATTAAAATTTACATAAACATTTCTGTG-TTTTCAAGCATT-AAA  947

seq1  AATTTCACTACAGACTCCATACATTAATTCACAGAGCTTCCAATTCAGTG  996
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  AATTTCACTACAGACT-CATACATT-ATTCACAGAGCTTCCAATTCAGTG  995

seq1  TCACTATACACAAAGAGGCTGGGGACAT-GTGCCTTAATGATGATAGTCA  1045
      |||||||| ||||||||||||||||||| ||||||| |||||||||||||
seq2  TCACTATA-ACAAAGAGGCTGGGGACATGGTGCCTT-ATGATGATAGTCA  1043

seq1  CCAAGTGAAGAGGATTTATGGCCTAT-GTCATGA-CTTCTT  1084
      ||||||||| ||||||||||| |||| ||||||| ||||||
seq2  CCAAGTGAAAAGGATTTATGG-CTATGGTCATGACCTTCTT  1083

seq1: chr18_26141723_26142822
seq2: B6Ng01-032C16.g_68_1153 (reverse)

seq1  TTCATTTTGTCATGTTTGGTTGTTGTCCCTTAGGAGCCTGTTCTTTTCTA  50
      |||||||||||||||   |    |||||| || ||||  |||||||| ||
seq2  TTCATTTTGTCATGTAGTG----TGTCCC-TAAGAGCTAGTTCTTTTTTA  45

seq1  ATGAGAGAAAGAGAATGGATGCGGGGGTAGGGGGTAGTGGAAGTAGAGAG  100
      |||| || |||||||| ||||||||| || ||||||||||||||||||||
seq2  ATGA-AG-AAGAGAATTGATGCGGGGTTA-GGGGTAGTGGAAGTAGAGAG  92

seq1  GGACGTGGAAGAATGTAGGGAGAAGGATATAATGTATGAGGAAATATTGC  150
      ||||||||||||   |||| ||||| |||| |||| || |||||||||||
seq2  GGACGTGGAAGA--TTAGGAAGAAGAATAT-ATGT-TGGGGAAATATTGC  138

seq1  TATTACAATAGCAAGCTTGAGGGCAGTCATATGACAAGTAGACCTTTCCC  200
      || |||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TA-TACAATAGCAAGCTTGAGGGCAGTCATA-GACAAGTAG-CCTTTCCC  185

seq1  ACAGGAGGGGGTGAGAACACCTTTTCAAGCTTTTGCCTTGCTTTTTTCTC  250
      ||| ||||||||||||  |||||||||||| |||||| ||||||||||||
seq2  ACA-GAGGGGGTGAGACAACCTTTTCAAGC-TTTGCC-TGCTTTTTTCTC  232

seq1  A-TCAGGTTCATCTATACAGTTAATTTTTACCTCAGCTCTAGAGCTCATG  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTTCATCTATACAGTTAATTTTTACCTCAGCTCTAGAGCTCATG  282

seq1  -AAACTGGT-GGAAATTCTTCTCAATGCGGATTCTTACTAAGATAAATTT  347
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGTGGGAAATTCTTCTCAATGCGGATTCTTACTAAGATAAATTT  332

seq1  ATTGCTTGGTATTCTTAGTTCTCTCCTCATCATTTCCTCTTTTTTTTCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGGTATTCTTAGTTCTCTCCTCATCATTTCCTCTTTTTTTTCAG  382

seq1  TCTAATTTTGGAAAATAAAATTATTTAATTATATAAGAGTTGTTGTGTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTTGGAAAATAAAATTATTTAATTATATAAGAGTTGTTGTGTTT  432

seq1  TGGTTTGGTGG-TTTTGCTTTGTTTTGTGAAGCAGATACAAGCAGAACCA  496
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGTGGTTTTTGCTTTGTTTTGTGAAGCAGATACAAGCAGAACCA  482

seq1  TCCGAGAAGGGGGAACCGCAATTAAGAAAATTCCTCCATTAGATTGAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGAAGGGGGAACCGCAATTAAGAAAATTCCTCCATTAGATTGAGCT  532

seq1  ATAAGCAAGTCTGTGGGACATTTTTTTTTTTTTTGATGTTGGAGATCGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAGTCTGTGGGACATTTTTTTTTTTTTTGATGTTGGAGATCGCA  582

seq1  GCCCACTATGGGTGGTGGCTCTCTTGGGCTGGGGGTCCTGAGCATTTTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTATGGGTGGTGGCTCTCTTGGGCTGGGGGTCCTGAGCATTTTAA  632

seq1  GAGAGCAGCCGGAGTAAGCCATAGCAGCATTCCTCTATGATCTCTGCATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGCCGGAGTAAGCCATAGCAGCATTCCTCTATGATCTCTGCATA  682

seq1  AGAACTCTGCTTGAGTTCCAGCCCTGACTTCCCCCAATAACAGACTGTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTGCTTGAGTTCCAGCCCTGACTTCCCCCAATAACAGACTGTAA  732

seq1  TGTGGACTTTACAAATAAACCTGATAAACCCCCTTTTCCTAAGTGACTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTTTACAAATAAACCTGATAAACCCCCTTTTCCTAAGTGACTTT  782

seq1  TGTTTATGATGTTTGCCATTGCACTAGAAAGTTAACTTGGACAACATAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGATGTTTGCCATTGCACTAGAAAGTTAACTTGGACAACATAGC  832

seq1  AAGAAGCAAACAAGCAAACCTGGTGAGAAATTAGGACAAGCTGCCCTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAAACAAGCAAACCTGGTGAGAAATTAGGACAAGCTGCCCTAAA  882

seq1  CAGGCAGGCTGCTGGAATGCCAGGATTCCAGTAATGAAACAACAAGCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGCTGCTGGAATGCCAGGATTCCAGTAATGAAACAACAAGCTTT  932

seq1  TCCCCAGTGTACTTCCAGTCTTTTGATAAAGGAAGAGGGATGACTCTTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTGTACTTCCAGTCTTTTGATAAAGGAAGAGGGATGACTCTTTT  982

seq1  CAAGAGAGGCCAGATTGGTGATGAGAAAGGGCTGTCATTGTGTCAGAGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGGCCAGATTGGTGATGAGAAAGGGCTGTCATTGTGTCAGAGAG  1032

seq1  AGGCAAAGAATGAATATGAGCCCTGTCTGAGCTCAAGAACAGATTCTAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGAATGAATATGAGCCCTGTCTGAGCTCAAGAACAGATTCTAGA  1082

seq1  ATTC  1100
      ||||
seq2  ATTC  1086