BAC Information

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BAC

Clone NameB6Ng01-032M21
Chromosome18 (Build37)
Map Location 50,610,838 - 50,710,728
singlet/doubletdoublet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
Downstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032M21.bB6Ng01-032M21.g
ACCDH862034DH862035
length1,1611,181
definitionDH862034|Mus musculus domesticus DNA, BAC clone: B6Ng01-032M21, 5' end.DH862035|Mus musculus domesticus DNA, BAC clone: B6Ng01-032M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,709,541 - 50,710,728)(50,610,838 - 50,612,048)
sequence
gaattctgaaatagcagtgctagatttaattattacattttattaataca
gtgttttaatattttatgaaaactgaaaacaagatttaaaatgtcattca
aactcaaagaggttctatcacattccattcaaaatatatcattgaatgta
ttattaaaattattttaagcctcctcaccctttctttcccaacaaattta
aacttcttttggcacctctaagtgaagactccttagtcacggtagcctgc
cttaagcactggattgcaggaagtaaagactaaataagccaggcttccag
acaatgttttcagttggcttctgagatatcatacagagtcagagctggct
tggagaaccctggggtattttctgaatgtgcacaactcattatatagaat
atatagacaattcattagtaaattgatttttcaagacgtgtgtgtctgtg
tatgcctgtgtagatatatgggttactagaactctctgtagctcagactc
tattatatcacacttcaaacacaagagttgcctgactgaaaggcctgtaa
gacccagaattctaggcctgaatcttgaaagttttgactgaatggtatag
catgggattaaatatgtgaatttccagcaaatactccattagtgcttctg
ctgatgacctgggcaccatgcttgagaactgactgcatgggtaaacttta
gcctttacatagccaggtccacaagtaaaattcagtatagttagatcttg
taaaaaccttttacagagctgggcggtggtggtgtatacctttaatccca
gcacttgggaggcagaggcaggcagatttctgagttcgagaccagcctgg
tctacaaagtgagttcaggacagccagggctatacagagaaaccctgtct
cgaaaacaaaaacaaaaaaccaaacaaaaaatcaaacaaaaaatccttta
cagaaatatctttttgagattctaactgtaatccatatcaggtttctgtc
tgtgtccactgagtaaaaatctataatgctagatgcaattcattttatca
ggtcttgtgctcgctgggtgtaacccttcgaaatgctcagaattgtccat
atgtagactcatagtttggaatacaagagatgctactgaatgtgatagaa
gagataagtta
gaattcaaatagaagacacggagacatcactgaaaatgccaacatttcaa
agctatatattttagttctaataacagaggacagattaattttctttaga
gcataggaaatacctaactccctctcagtttagttaggataaacttttat
tctctgtttaaattttaccataaagtacaaaaggctgagcctatgagaat
acaaatatcccaataactagacactggctagacaaggtttttgtacttct
gtaaaaaaaaaaaatgaaattcagtcatggttcccttgagtctcaaggga
aataatttttttctgttgaaactcagatacagtttaccccatactgagat
aacagaggcattgatttccaaagcagccagaagggattaaaaaatgtgtt
caacttttttttttcaccttcagtttttgagatttcactataccatgcac
agtatactatatttagaggaaccttaatttttttcagggtactttcaaca
ctgataaattttaatttcttcattaaattggtaaccttgacagaacatta
tttccttgaataaatagatagtaaataacttttatggtcaggcagtgctc
atacttaaggattgtgttttataatttataaggggacttttataatccat
cagatttcccttggcatacaactttactcatgccatttctggcaaccagt
ggtgcctcttaggtttgacaaaatgacacctctgctatgcttcatctccc
ctgagctctgatggtggcttccccatccactaatgtttgcctcatccgtg
tcacatgaatacttggcactgtaggagcactagtagccctgaagcaatcc
ttgatctcttgggaacaggaacatgtttcctctgttccaagcagatgact
ctgaagtgtacagattcagtacagattcattgggacccttggcgcactgg
tcttatctgccctcaacatcctagaaacatgcattcttgtgatcatcttt
cctcctatttcacacttctcatatcatgctcaattgtttatgtaatacag
ctgtagtcactataaatagtcatattatgccaaagaagttcagagagact
attcatgaagtctttggtgatggattttctaaggaaaaattcagccaggg
agaatcagaacagcatcgtgtgatagaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50709541_50710728
seq2: B6Ng01-032M21.b_45_1205 (reverse)

seq1  TAACTTTATCTCTCTTCTTATCATTTCTAGTAGCATTCCCTCTTGGTATC  50
      |||||   | ||||||| |||||  |  ||||||||   ||||||   ||
seq2  TAACT---TATCTCTTC-TATCACATTCAGTAGCAT---CTCTTGTATTC  43

seq1  CAAACCATAGAG-CTACATTATTGACAATTTCTGAGCAATTTCGAAGGTT  99
      ||||| || ||| ||||| ||| ||||| |||||||| |||||||||| |
seq2  CAAACTAT-GAGTCTACA-TATGGACAA-TTCTGAGC-ATTTCGAAGGGT  89

seq1  TAACAACCCAGGCGAGCAACAGGACTTGATAAAAATGAATTGCATCTAGC  149
      ||   ||||| |||||| ||| ||| |||| |||||||||||||||||||
seq2  TA--CACCCA-GCGAGC-ACAAGACCTGAT-AAAATGAATTGCATCTAGC  134

seq1  AATTATAGATTTTTTACTCCAGTGGAACACAGACAGAAACCTGATAATGG  199
       |||||||| |||||||| |||||| ||||||||||||||||||| ||||
seq2  -ATTATAGA-TTTTTACT-CAGTGG-ACACAGACAGAAACCTGAT-ATGG  179

seq1  ATTAACAGTTAAGAATTCTCAAAAAGATATTTCTGTTAAAGGATTTTTTT  249
      ||| |||||| |||| ||||||||||||||||||| ||||||| ||||||
seq2  ATT-ACAGTT-AGAA-TCTCAAAAAGATATTTCTG-TAAAGGA-TTTTTT  224

seq1  GTTTGATTTTTTGTTTTGGTTTTTTGTTTTTGTTTTTCGAGACAGGGTTT  299
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  GTTTGATTTTTTG-TTTGGTTTTTTGTTTTTG-TTTTCGAGACAGGGTTT  272

seq1  CTCTGTATAGCCCTGGCTGTCCTGAACTCACTTTGTAGACCAGGCTGGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATAGCCCTGGCTGTCCTGAACTCACTTTGTAGACCAGGCTGGTC  322

seq1  TCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  372

seq1  GTATACACCACCACCGCCCAGCTCTGTAAAAGGTTTTTACAAGATCTAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACACCACCACCGCCCAGCTCTGTAAAAGGTTTTTACAAGATCTAAC  422

seq1  TATACTGAATTTTACTTGTGGACCTGGCTATGTAAAGGCTAAAGTTTACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGAATTTTACTTGTGGACCTGGCTATGTAAAGGCTAAAGTTTACC  472

seq1  CATGCAGTCAGTTCTCAAGCATGGTGCCCAGGTCATCAGCAGAAGCACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGTCAGTTCTCAAGCATGGTGCCCAGGTCATCAGCAGAAGCACTA  522

seq1  ATGGAGTATTTGCTGGAAATTCACATATTTAATCCCATGCTATACCATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTATTTGCTGGAAATTCACATATTTAATCCCATGCTATACCATTC  572

seq1  AGTCAAAACTTTCAAGATTCAGGCCTAGAATTCTGGGTCTTACAGGCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAACTTTCAAGATTCAGGCCTAGAATTCTGGGTCTTACAGGCCTT  622

seq1  TCAGTCAGGCAACTCTTGTGTTTGAAGTGTGATATAATAGAGTCTGAGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGGCAACTCTTGTGTTTGAAGTGTGATATAATAGAGTCTGAGCT  672

seq1  ACAGAGAGTTCTAGTAACCCATATATCTACACAGGCATACACAGACACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGTTCTAGTAACCCATATATCTACACAGGCATACACAGACACAC  722

seq1  ACGTCTTGAAAAATCAATTTACTAATGAATTGTCTATATATTCTATATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTTGAAAAATCAATTTACTAATGAATTGTCTATATATTCTATATAA  772

seq1  TGAGTTGTGCACATTCAGAAAATACCCCAGGGTTCTCCAAGCCAGCTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTGCACATTCAGAAAATACCCCAGGGTTCTCCAAGCCAGCTCTG  822

seq1  ACTCTGTATGATATCTCAGAAGCCAACTGAAAACATTGTCTGGAAGCCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTATGATATCTCAGAAGCCAACTGAAAACATTGTCTGGAAGCCTG  872

seq1  GCTTATTTAGTCTTTACTTCCTGCAATCCAGTGCTTAAGGCAGGCTACCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTAGTCTTTACTTCCTGCAATCCAGTGCTTAAGGCAGGCTACCG  922

seq1  TGACTAAGGAGTCTTCACTTAGAGGTGCCAAAAGAAGTTTAAATTTGTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAGGAGTCTTCACTTAGAGGTGCCAAAAGAAGTTTAAATTTGTTG  972

seq1  GGAAAGAAAGGGTGAGGAGGCTTAAAATAATTTTAATAATACATTCAATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAGGGTGAGGAGGCTTAAAATAATTTTAATAATACATTCAATG  1022

seq1  ATATATTTTGAATGGAATGTGATAGAACCTCTTTGAGTTTGAATGACATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTGAATGGAATGTGATAGAACCTCTTTGAGTTTGAATGACATT  1072

seq1  TTAAATCTTGTTTTCAGTTTTCATAAAATATTAAAACACTGTATTAATAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTTGTTTTCAGTTTTCATAAAATATTAAAACACTGTATTAATAA  1122

seq1  AATGTAATAATTAAATCTAGCACTGCTATTTCAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATAATTAAATCTAGCACTGCTATTTCAGAATTC  1161

seq1: chr18_50610838_50612048
seq2: B6Ng01-032M21.g_68_1248

seq1  GAATTCAAATAGAAGACACGGAGACATCACTGAAAATGCCAACATTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAGAAGACACGGAGACATCACTGAAAATGCCAACATTTCAA  50

seq1  AGCTATATATTTTAGTTCTAATAACAGAGGACAGATTAATTTTCTTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATATTTTAGTTCTAATAACAGAGGACAGATTAATTTTCTTTAGA  100

seq1  GCATAGGAAATACCTAACTCCCTCTCAGTTTAGTTAGGATAAACTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGAAATACCTAACTCCCTCTCAGTTTAGTTAGGATAAACTTTTAT  150

seq1  TCTCTGTTTAAATTTTACCATAAAGTACAAAAGGCTGAGCCTATGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTAAATTTTACCATAAAGTACAAAAGGCTGAGCCTATGAGAAT  200

seq1  ACAAATATCCCAATAACTAGACACTGGCTAGACAAGGTTTTTGTACTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATCCCAATAACTAGACACTGGCTAGACAAGGTTTTTGTACTTCT  250

seq1  GTAAAAAAAAAAAATGAAATTCAGTCATGGTTCCCTTGAGTCTCAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAAAAAATGAAATTCAGTCATGGTTCCCTTGAGTCTCAAGGGA  300

seq1  AATAATTTTTTTCTGTTGAAACTCAGATACAGTTTACCCCATACTGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTTTCTGTTGAAACTCAGATACAGTTTACCCCATACTGAGAT  350

seq1  AACAGAGGCATTGATTTCCAAAGCAGCCAGAAGGGATTAAAAAATGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGCATTGATTTCCAAAGCAGCCAGAAGGGATTAAAAAATGTGTT  400

seq1  CAACTTTTTTTTTTCACCTTCAGTTTTTGAGATTTCACTATACCATGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTTTTTTTCACCTTCAGTTTTTGAGATTTCACTATACCATGCAC  450

seq1  AGTATACTATATTTAGAGGAACCTTAATTTTTTTCAGGGTACTTTCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTATATTTAGAGGAACCTTAATTTTTTTCAGGGTACTTTCAACA  500

seq1  CTGATAAATTTTAATTTCTTCATTAAATTGGTAACCTTGACAGAACATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAATTTTAATTTCTTCATTAAATTGGTAACCTTGACAGAACATTA  550

seq1  TTTCCTTGAATAAATAGATAGTAAATAACTTTTATGGTCAGGCAGTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGAATAAATAGATAGTAAATAACTTTTATGGTCAGGCAGTGCTC  600

seq1  ATACTTAAGGATTGTGTTTTATAATTTATAAGGGGACTTTTATAATCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAGGATTGTGTTTTATAATTTATAAGGGGACTTTTATAATCCAT  650

seq1  CAGATTTCCCTTGGCATACAACTTTACTCATGCCATTTCTGGCAACCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCCCTTGGCATACAACTTTACTCATGCCATTTCTGGCAACCAGT  700

seq1  GGTGCCTCTTAGGTTTGACAAAATGACACCTCTGCTATGCTTCATCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTCTTAGGTTTGACAAAATGACACCTCTGCTATGCTTCATCTCCC  750

seq1  CTGAGCTCTGATGGTGGCTTCCCCATCCACTAATGTTTGCCTCATCCGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCTGATGGTGGCTTCCCCATCCACTAATGTTTGCCTCATCCGTG  800

seq1  TCACATGAATACTTGGCACTGTAGGAGCACTAGTAGCCCTGAAGCAATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAATACTTGGCACTGTAGGAGCACTAGTAGCCCTGAAGCAATCC  850

seq1  TTGATCTCTTGGGAACAGGAACATGTTTCCTCTGTTCCAAGCAGATGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCTTGGGAACAGGAACATGTTTCCTCTGTTCCAAGCAGATGACT  900

seq1  CTGAAGTGTACAGATTCAGTACAGATTCATTGGGACCCTTGGCGCACTGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGAAGTGTACAGATTCAGTACAGATTCATTGGGACCCTTGGCGCACT-G  949

seq1  GTCTTATCTGCCCTCCAACATCCTAGAAACAATGCATTCTTGTTGATCAT  1000
      |||||||||||||| ||||||||||||||| ||||||||||| |||||||
seq2  GTCTTATCTGCCCT-CAACATCCTAGAAAC-ATGCATTCTTG-TGATCAT  996

seq1  CTTTCCTTCCTATTTCACACTTCTCAATTATTCATGCTCAATTTGTTTTA  1050
      |||||| |||||||||||||||||||  || |||||||||| ||||||  
seq2  CTTTCC-TCCTATTTCACACTTCTCA--TA-TCATGCTCAA-TTGTTT--  1039

seq1  ATGT-ATACAGCTGTAGTCACTAATAAATAGTCAATATTATGCCAAAAGA  1099
      |||| ||||||||||||||||| |||||||||| |||||||||| |||||
seq2  ATGTAATACAGCTGTAGTCACT-ATAAATAGTC-ATATTATGCC-AAAGA  1086

seq1  AGTTTCAGGAGA-ACTATTCATGAAGTCTTTGTGGTAGGATTTTCTTAGG  1148
      || |||| |||| |||||||||||||||||||  |  ||||||||| |||
seq2  AG-TTCA-GAGAGACTATTCATGAAGTCTTTGGTGATGGATTTTCTAAGG  1134

seq1  GAGAAAATTCAAGCCAAAGCAGAGAATTTAAGAAACAGACAATTTGTGTT  1198
         ||||||| |||||     |||||  | || ||||| ||  | |||  
seq2  --AAAAATTC-AGCCA---GGGAGAA--TCAG-AACAG-CA--TCGTG--  1170

seq1  GATGATAGAATTA  1211
        |||||||||||
seq2  --TGATAGAATTA  1181