BAC Information

Click to search

BAC

Clone NameB6Ng01-032O03
Chromosome10 (Build37)18 (Build37)
Map Location 50,979,616 - 50,980,76718,109,306 - 18,109,844
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC629652, Ascc3, Sim1, LOC268300
Downstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032O03.bB6Ng01-032O03.g
ACCDH862090DH862091
length1,138855
definitionDH862090|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O03, 5' end.DH862091|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,979,616 - 50,980,767)(18,109,306 - 18,109,844)
sequence
gaattcagcattgtatccatacctgattctttttccactgttctcaatgc
atatatgtatatacatatatattcctaaataccctgtacagtatgcataa
tgttacttgtacatgtgttttcagggataactgtttagcattggacaacc
aattggtgtgtttttccctgtggaagactatttatatcactctcaacatg
cagtgagtgtccatacttctttgtgtaggattcaggtctactttaagtgg
atgttcttggcttaaagtggatggtcccccgtacactttaagtcagcaac
aataacacacttttcccaaaatccctgatctgaattctgactaattactg
tggtagcctttgcattctgttataattcaaatgtgaacatttttattctc
cccaacgttagcatttcgtgtttgacatgaaagttaacagataagttcac
agtttgacagatcctctacaccataaagagactcaaatacacacttgaaa
aaaataagtgtagaattctgtgaggttacacagtttgtttttgtaacact
taagatcctacaaagtcttcccatttaaacagcagcctgaaataaacagc
actggctatgtggaagttttattgtttaaacatttagctgtaaaattact
aataaggttaatttgccacacaacaagtcttgaaaacagctagcctgagt
cttgaacaatgaactataaacacaaagcttttaaaatccttccttgattg
agtcataaaaaaatgtgcaacattcccccctatgtcataaaaggagaatc
aaattttgaatacttttcttttattctttgtggggtttttctggccatta
ttttcaagttactactaaaagtcattttaattattttagaatgggctgtc
tggaccttaagcatactggagacatattatcttctcacaactcctctgga
atgagttcaaacatctggattcaaggactcctaagccacagatcagaact
tattacttctccaatgtgatatcttctgacaacttggttccctagactta
atgcattgtattagtatgttggaacatttatgaaatagcaaggttttatt
gggaattgagttaaaaatttcgagaattgagctctaaa
gaattcctgatctttccaagatttttaccatgaatgggtgttggattttg
tcaaatgctctctcagcttctaaagagatgatcatgtggtttttgtcttt
gagtttatttatatagtgaattacgttgatggatttccatatattaaaca
tccctgcatccctggaatgaaacctacttggttagaatggatgatttatt
tcatgtgttcttggattcggttagcaagaattttattgaatatttttgca
ccgatattcataaggaaaatgagcctgaatttctctatctttgttgggtc
tttctgtggcttaggtatcagagtaattgtggcttcatagaatgagttgg
gtagagtcctttctgcctctattttgtggaatagtttgtgaagaactgga
attagatcttctttgaaggtctgatagaactctgcactaaacccatcagg
tactgggctttttttagttgggagactattaatgactacttctatttctt
tgggggatataagatataggatttagatcattaacctgatactgatttaa
ctttggtacctgatatctgtctagaaacttgtccatttcatccaggttct
ccagttttgttgagtatagccttttgtagaaggatctgatggtgttttgg
atttcttcaggatctgttgttatgtctccctttttcatttctgattttgt
taattaggatgctgtccctgtgccctctagtgagtctggataagggttat
ctatcctgttgattttttcaagaacgagctctcccttggttgattctttg
aaatagtttttcttgtttcctctggtttgatttcgcccctgagttaaatt
atttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_50979616_50980767
seq2: B6Ng01-032O03.b_48_1185 (reverse)

seq1  TTTAGAGCTTCAAATATTCTGAAAATTTTTATACTCAATTTCCCATAAAA  50
      |||||||| |||   |||||  ||||||||| |||||||| || ||||||
seq2  TTTAGAGC-TCA---ATTCTCGAAATTTTTA-ACTCAATTCCCAATAAAA  45

seq1  CCTTGCTTATTTTCATAAATTGTTCCAACCATACTAAGTACAATGCATTA  100
      |||||||   ||||||||| |||||||| |||||||| ||||||||||||
seq2  CCTTGCT--ATTTCATAAA-TGTTCCAA-CATACTAA-TACAATGCATTA  90

seq1  AGTCTAGGGAACCAAGTTGTCAGAAGATATCACATTTGGAGAAGTAATAA  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTCTAGGGAACCAAGTTGTCAGAAGATATCACA-TTGGAGAAGTAATAA  139

seq1  GTTCTGATTCTGTGGCTTAGAGTTCCTTGAATCCAGATGTTTGAACTCAT  200
      ||||||| ||||||||||||   |||||||||||||||||||||||||| 
seq2  GTTCTGA-TCTGTGGCTTAGGAGTCCTTGAATCCAGATGTTTGAACTCA-  187

seq1  TTCCAGAGGAGTTTGTGAGAAGATAATAATGTCTCCAGTATGCTTAAGGT  250
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  TTCCAGAGGAG-TTGTGAGAAGATAAT-ATGTCTCCAGTATGCTTAAGGT  235

seq1  CCAGACAGCCATTTCT-AAATAATTAAAATGACTTTTAGTAGTAACTTGA  299
      ||||||||||  |||| |||||||||||||||||||||||||||||||||
seq2  CCAGACAGCCCATTCTAAAATAATTAAAATGACTTTTAGTAGTAACTTGA  285

seq1  AAATAATGGCCAGAAAAACCCCACAAAGAATAAAAGAAAAGTATTCAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGGCCAGAAAAACCCCACAAAGAATAAAAGAAAAGTATTCAAAA  335

seq1  TTTGATTCTCCTTTTATGACATAGGGGGGAATGTTGCACATTTTTTTATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCTCCTTTTATGACATAGGGGGGAATGTTGCACATTTTTTTATG  385

seq1  ACTCAATCAAGGAAGGATTTTAAAAGCTTTGTGTTTATAGTTCATTGTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCAAGGAAGGATTTTAAAAGCTTTGTGTTTATAGTTCATTGTTC  435

seq1  AAGACTCAGGCTAGCTGTTTTCAAGACTTGTTGTGTGGCAAATTAACCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCAGGCTAGCTGTTTTCAAGACTTGTTGTGTGGCAAATTAACCTT  485

seq1  ATTAGTAATTTTACAGCTAAATGTTTAAACAATAAAACTTCCACATAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAATTTTACAGCTAAATGTTTAAACAATAAAACTTCCACATAGCC  535

seq1  AGTGCTGTTTATTTCAGGCTGCTGTTTAAATGGGAAGACTTTGTAGGATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTTTATTTCAGGCTGCTGTTTAAATGGGAAGACTTTGTAGGATC  585

seq1  TTAAGTGTTACAAAAACAAACTGTGTAACCTCACAGAATTCTACACTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTTACAAAAACAAACTGTGTAACCTCACAGAATTCTACACTTAT  635

seq1  TTTTTTCAAGTGTGTATTTGAGTCTCTTTATGGTGTAGAGGATCTGTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAAGTGTGTATTTGAGTCTCTTTATGGTGTAGAGGATCTGTCAA  685

seq1  ACTGTGAACTTATCTGTTAACTTTCATGTCAAACACGAAATGCTAACGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAACTTATCTGTTAACTTTCATGTCAAACACGAAATGCTAACGTT  735

seq1  GGGGAGAATAAAAATGTTCACATTTGAATTATAACAGAATGCAAAGGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAATAAAAATGTTCACATTTGAATTATAACAGAATGCAAAGGCTA  785

seq1  CCACAGTAATTAGTCAGAATTCAGATCAGGGATTTTGGGAAAAGTGTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTAATTAGTCAGAATTCAGATCAGGGATTTTGGGAAAAGTGTGTT  835

seq1  ATTGTTGCTGACTTAAAGTGTACGGGGGACCATCCACTTTAAGCCAAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGCTGACTTAAAGTGTACGGGGGACCATCCACTTTAAGCCAAGAA  885

seq1  CATCCACTTAAAGTAGACCTGAATCCTACACAAAGAAGTATGGACACTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTTAAAGTAGACCTGAATCCTACACAAAGAAGTATGGACACTCA  935

seq1  CTGCATGTTGAGAGTGATATAAATAGTCTTCCACAGGGAAAAACACACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTTGAGAGTGATATAAATAGTCTTCCACAGGGAAAAACACACCA  985

seq1  ATTGGTTGTCCAATGCTAAACAGTTATCCCTGAAAACACATGTACAAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTGTCCAATGCTAAACAGTTATCCCTGAAAACACATGTACAAGTA  1035

seq1  ACATTATGCATACTGTACAGGGTATTTAGGAATATATATGTATATACATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGCATACTGTACAGGGTATTTAGGAATATATATGTATATACATA  1085

seq1  TATGCATTGAGAACAGTGGAAAAAGAATCAGGTATGGATACAATGCTGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTGAGAACAGTGGAAAAAGAATCAGGTATGGATACAATGCTGAA  1135

seq1  TTC  1152
      |||
seq2  TTC  1138

seq1: chr18_18109306_18109844
seq2: B6Ng01-032O03.g_377_921 (reverse)

seq1  GAAATAATCAAACTCAGGGGCGAAATCAACCAAGTGGAAACAAG---AAC  47
      ||||||||  ||||||||||||||||||| | || |||||||||   |||
seq2  GAAATAATTTAACTCAGGGGCGAAATCAAACCAGAGGAAACAAGAAAAAC  50

seq1  TA-TTCAGAGAATCAACCAATCGAGGAGCTGGTTCTTTGAGAAAATCAAC  96
      || |||| ||||||||||||  || ||||| |||| |||| |||||||||
seq2  TATTTCAAAGAATCAACCAAGGGA-GAGCTCGTTC-TTGAAAAAATCAAC  98

seq1  AAGGTAGACAAACCCTTAGCCAGACTCACTAGAGGGCACAGGGAAAGCAT  146
      | | ||||  |||||||| ||||||||||||||||||||||||| |||||
seq2  AGGATAGA-TAACCCTTATCCAGACTCACTAGAGGGCACAGGGACAGCAT  147

seq1  TCTAATTAACAAAATCAGAAATG-AAAAGGGAGACATAACAACAGATCCT  195
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTAATTAACAAAATCAGAAATGAAAAAGGGAGACATAACAACAGATCCT  197

seq1  GAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAAC  247

seq1  AAAACTGGAGAACCTGGATGAAATGGAGAAGTTTCTAGACAGATACCAGG  295
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  AAAACTGGAGAACCTGGATGAAATGGACAAGTTTCTAGACAGATATCAGG  297

seq1  TACCAAAGTTGAATCAAGATCAGGTTAATGATCTAAA----CAGCCCGAT  341
      |||||||||| |||||  |||||||||||||||||||        |  ||
seq2  TACCAAAGTTAAATCAGTATCAGGTTAATGATCTAAATCCTATATCTTAT  347

seq1  ATCCCCCAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACCAAAAAAA  391
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  ATCCCCCAAAGAAATAGAAGTAGTCATTAATAGTCTCCCAACTAAAAAAA  397

seq1  GCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTCCAAAGAA  441
      |||||| ||| ||||||||||||||||||||||||||||||| |||||||
seq2  GCCCAGTACCTGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA  447

seq1  GATCTAATCCCAGTTCTTCACAAACTATTCCACAAAATAGAAACAGAAGG  491
      |||||||| ||||||||||||||||||||||||||||||||  ||||| |
seq2  GATCTAATTCCAGTTCTTCACAAACTATTCCACAAAATAGAGGCAGAAAG  497

seq1  TACTCTACCCAACTCATTCTATGAAGCCACAATTACTCTGATACCTAA  539
       |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTACCCAACTCATTCTATGAAGCCACAATTACTCTGATACCTAA  545