BAC Information

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BAC

Clone NameB6Ng01-033I09
Chromosome18 (Build37)
Map Location 19,762,754 - 19,763,660
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658, LOC665624, LOC665629
Downstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033I09.bB6Ng01-033I09.g
ACCDH862549DH862550
length380905
definitionDH862549|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I09, 5' end.DH862550|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
agttatgaacatatatagttgccatgaacttttttcatatgggatgaaaa
aagtctcccttttcttcctccatctaagccttcatatttaccactctcct
tcaaattcatgtcctctatttttacctattgttatgcatgcatatgcatg
tgtgtatgcacgtgcatgtgtgtgtatgtatgtgtgataaagagaaaggt
gtgagagatccctccaagagctaaaagtactgaccaaaaaactcatacca
gatataagacactcactttttgagttgttggccagggctgtctaagagac
tccagaaattactgtgaatgtcatatgccccaatacaggggaatgccagg
gccaggaagtgggagtgggtgggttgggga

gaattcattgtgcctgcactctacagtgcgctccgtacagcgtctggtgt
aatttggacgatgtgctcagcatctgctgcctttcagacaagagcagtgt
gattaagggaattcacccagcagcttttctgattttaaagagctgaaatg
agaccagttcctacagagacagtggaataagtataggtgtgtttctgcag
atgatggaagaataacggtcaccatgctgctctgtggtagaaataaaaaa
acttaaaatgaagcttattcaaaacgatccaaatacaattttctcttcag
aaaacaaagaccaagaaggtcccattcaacttaaaaaattagtaggactt
ttgttattcccatgagtatctacctcagtagcctacataatatgcataat
atgggcaagagtaaacaggatagattgttaggatattaattaaagatatt
tcttcattggggttggcacagaaaattctaatgatgcataccttaggaag
tagaatataatgtaacttattaggggagttggacagaagagactttaaca
tatttttccttttatacaaactattaccctgtactctgtgttttaaaatt
ctgaacatacataacttcatataattaacatttaccttaacaaaagaaaa
ctggattttaacattttaatcaaattatttttgggggtactttttgatct
gagggtcaggaaagcaaatcggggttcttcttctgactggggttgcagtc
agttttgaatgagttaaaaactaaattaactgccttcctcatcaatgaaa
ttggagcaatataagcagcctttatacctttcaatttatcttaaaattag
atgagcattattacactgggctatagtggttatatactataaaatatgtg
tatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19762754_19763660
seq2: B6Ng01-033I09.g_70_974

seq1  GAATTCATTGTGCCTGCACTCTACAGTGCGCTCCGTACAGCGTCTGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGCCTGCACTCTACAGTGCGCTCCGTACAGCGTCTGGTGT  50

seq1  AATTTGGACGATGTGCTCAGCATCTGCTGCCTTTCAGACAAGAGCAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGACGATGTGCTCAGCATCTGCTGCCTTTCAGACAAGAGCAGTGT  100

seq1  GATTAAGGGAATTCACCCAGCAGCTTTTCTGATTTTAAAGAGCTGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGGGAATTCACCCAGCAGCTTTTCTGATTTTAAAGAGCTGAAATG  150

seq1  AGACCAGTTCCTACAGAGACAGTGGAATAAGTATAGGTGTGTTTCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTTCCTACAGAGACAGTGGAATAAGTATAGGTGTGTTTCTGCAG  200

seq1  ATGATGGAAGAATAACGGTCACCATGCTGCTCTGTGGTAGAAATAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGAAGAATAACGGTCACCATGCTGCTCTGTGGTAGAAATAAAAAA  250

seq1  ACTTAAAATGAAGCTTATTCAAAACGATCCAAATACAATTTTCTCTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAATGAAGCTTATTCAAAACGATCCAAATACAATTTTCTCTTCAG  300

seq1  AAAACAAAGACCAAGAAGGTCCCATTCAACTTAAAAAATTAGTAGGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGACCAAGAAGGTCCCATTCAACTTAAAAAATTAGTAGGACTT  350

seq1  TTGTTATTCCCATGAGTATCTACCTCAGTAGCCTACATAATATGCATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTCCCATGAGTATCTACCTCAGTAGCCTACATAATATGCATAAT  400

seq1  ATGGGCAAGAGTAAACAGGATAGATTGTTAGGATATTAATTAAAGATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAGAGTAAACAGGATAGATTGTTAGGATATTAATTAAAGATATT  450

seq1  TCTTCATTGGGGTTGGCACAGAAAATTCTAATGATGCATACCTTAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTGGGGTTGGCACAGAAAATTCTAATGATGCATACCTTAGGAAG  500

seq1  TAGAATATAATGTAACTTATTAGGGGAGTTGGACAGAAGAGACTTTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATAATGTAACTTATTAGGGGAGTTGGACAGAAGAGACTTTAACA  550

seq1  TATTTTTCCTTTTATACAAACTATTACCCTGTACTCTGTGTTTTAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCTTTTATACAAACTATTACCCTGTACTCTGTGTTTTAAAATT  600

seq1  CTGAACATACATAACTTCATATAATTAACATTTACCTTAACAAAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATACATAACTTCATATAATTAACATTTACCTTAACAAAAGAAAA  650

seq1  CTGGATTTTAACATTTTAATCAAATTA-TTTTGGGGGTAC-TTTTGATCT  698
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  CTGGATTTTAACATTTTAATCAAATTATTTTTGGGGGTACTTTTTGATCT  700

seq1  GAGGGTCAGGAAAGCAAATCGGGGTTCTTCTTCTGACTGGGGTTGCAGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCAGGAAAGCAAATCGGGGTTCTTCTTCTGACTGGGGTTGCAGTC  750

seq1  AGTTTTGAATGAGTTAAAAACTAAATTAACTGCCTTCCTCATCAATGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAATGAGTTAAAAACTAAATTAACTGCCTTCCTCATCAATGAAA  800

seq1  TTGGAGCAATATAAGCAGCCTTTATACCTTTCAAATTTATTCTTAAAATT  848
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  TTGGAGCAATATAAGCAGCCTTTATACCTTTC-AATTTA-TCTTAAAATT  848

seq1  AGATGAGCATTATTACACTGGGCTATTAGTGGTATTATACTAGTAAAATA  898
      ||||||||||||||||||||||||| |||||||  ||||||| |||||||
seq2  AGATGAGCATTATTACACTGGGCTA-TAGTGGTTATATACTA-TAAAATA  896

seq1  TGTGTATCC  907
      |||||||||
seq2  TGTGTATCC  905


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