BAC Information

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BAC

Clone NameB6Ng01-033P14
Chromosome18 (Build37)
Map Location 44,180,567 - 44,302,223
singlet/doubletdoublet
Overlap geneSpink5, EG433178, LOC666969, EG433180, Spink12
Upstream genePpp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94
Downstream geneLOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033P14.bB6Ng01-033P14.g
ACCDH862870DH862871
length9851,098
definitionDH862870|Mus musculus domesticus DNA, BAC clone: B6Ng01-033P14, 5' end.DH862871|Mus musculus domesticus DNA, BAC clone: B6Ng01-033P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,180,567 - 44,181,552)(44,301,108 - 44,302,223)
sequence
gaattcttcaaactcatctttttactatagaaaataatgcagagctgttg
gtattggactcactggttttcagtctttccatctctttccttctagactc
agtgatctgaggatgtggagaagtctccactcagtctatgctctggaaat
ctgatcacaatgttgtctatccagctgcctgtttaataaaagtagaaact
cagcagaacatccttttggggatttgtttatgaccgctagataatagaaa
tatattttaatagtagctgaatatatggtgccctttgtcttgattaaaca
cagtggtagacaagttgctgccattgttgaagaagtggggcaagatggac
tctgaggcagccagtacatgtatgaagctacctgttaacatgtcagaccc
ctacctagtatttgtatttccataaataccatacctcaattatataagtt
ttatagttgacaacatccattactttctcataactaattatttacttctt
tataatatttttgtttaatttttgagattataccatagcttttccatgct
agagtgtgggagagactaaagagatgaatctacaaatatatgtaaatctc
aagaatggcaatctccaacataaatgttgtatgagtcatatatgtgtatg
tatgtatgtgtgtgcatatgtatatatatacacatatatacatataattt
taattttgagtagttagcaaaacaactagataaaactaattctaattgtt
atctagtactatatatcacttattaagtcaactaatataaatgtttttat
ttaataaatctttgatattggtgtatatttttccactattagtacctcta
atttggaccagtcttctttcagtgttcattggccccatggagctggaggt
ggctgtaggggataatgtaactataccatgggatacgatggaaatctgag
aaagatcctgtactgatatggatgacttgaaacca
gaattcagagacctgtgagacttccttaattaagcttagaagataagata
gctgggtggtgccaatcttggttggctctagatggtttaaggcaggctaa
gcaacccaaatagagcaaactagtaagcagcactccttcacggcttctgc
tgcattttctatctccagatttctgccttgacttccctcagtgatggtct
gtgatggagcactgtaagttgaaataaatcctttctccccaaagtcgctt
ttggtcattgttttaggacagcaataactaagataggcagtgatgtttag
gatcactacagatgtggccctcatctctttctcccactatcttactaatt
catcctgtctacatagcaagttttgaaatcaattattttaatactcttgt
gagttttatgttttagtggttcctattgtgggggtggtaaacttgtttgg
tcaatctttctgaaacctgcctttccatgctttgtatgggttttaaatta
tacagacacagtattctgaatggtcaccacaaatcagaatttcaattgcc
tatctttcagttatttatatttttgtttaaggacagaaatggtgacttgt
gacctcagcatgaaagaaaaaaatctaagttgtgcaaagattgatttttg
aatttttttactgtaaaatggtattttgcggaaatgttcacaacaaaatg
atttattagaaggaaaactctacacacttattcagttccaataaaaagta
tagatactaagatttattttctagtcaactatgtttgatcacttatattc
cagtaaaactaatcacactattctagtgagttacatatacctctatagtt
gcctatttcctaggacaataggtatacacaaccatcacaaacataacaca
tagatattaattactatatcaccataaatgaccatgaaaggaaatggaga
caaaatgacttgttctactcagctcttctatggcatagaatgggacactt
ctcacgagatgaaaacagcacacttcacttacctatatcctcgtgataat
gaaatgctgaattagaaaatgtcattcttgtgatcttatgtttagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44180567_44181552
seq2: B6Ng01-033P14.b_45_1027

seq1  GAATTCTTCAAACTCATCTTTTTACTATAGAAAATAATGCAGAGCTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAACTCATCTTTTTACTATAGAAAATAATGCAGAGCTGTTG  50

seq1  GTATTGGACTCACTGGTTTTCAGTCTTTCCATCTCTTTCCTTCTAGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGACTCACTGGTTTTCAGTCTTTCCATCTCTTTCCTTCTAGACTC  100

seq1  AGTGATCTGAGGATGTGGAGAAGTCTCCACTCAGTCTATGCTCTGGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTGAGGATGTGGAGAAGTCTCCACTCAGTCTATGCTCTGGAAAT  150

seq1  CTGATCACAATGTTGTCTATCCAGCTGCCTGTTTAATAAAAGTAGAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCACAATGTTGTCTATCCAGCTGCCTGTTTAATAAAAGTAGAAACT  200

seq1  CAGCAGAACATCCTTTTGGGGATTTGTTTATGACCGCTAGATAATAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAACATCCTTTTGGGGATTTGTTTATGACCGCTAGATAATAGAAA  250

seq1  TATATTTTAATAGTAGCTGAATATATGGTGCCCTTTGTCTTGATTAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTAATAGTAGCTGAATATATGGTGCCCTTTGTCTTGATTAAACA  300

seq1  CAGTGGTAGACAAGTTGCTGCCATTGTTGAAGAAGTGGGGCAAGATGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTAGACAAGTTGCTGCCATTGTTGAAGAAGTGGGGCAAGATGGAC  350

seq1  TCTGAGGCAGCCAGTACATGTATGAAGCTACCTGTTAACATGTCAGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGCAGCCAGTACATGTATGAAGCTACCTGTTAACATGTCAGACCC  400

seq1  CTACCTAGTATTTGTATTTCCATAAATACCATACCTCAATTATATAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAGTATTTGTATTTCCATAAATACCATACCTCAATTATATAAGTT  450

seq1  TTATAGTTGACAACATCCATTACTTTCTCATAACTAATTATTTACTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTGACAACATCCATTACTTTCTCATAACTAATTATTTACTTCTT  500

seq1  TATAATATTTTTGTTTAATTTTTGAGATTATACCATAGCTTTTCCATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTTTTGTTTAATTTTTGAGATTATACCATAGCTTTTCCATGCT  550

seq1  AGAGTGTGGGAGAGACTAAAGAGATGAATCTACAAATATATGTAAATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGGGAGAGACTAAAGAGATGAATCTACAAATATATGTAAATCTC  600

seq1  AAGAATGGCAATCTCCAACATAAATGTTGTATGAGTCATATATGTGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGCAATCTCCAACATAAATGTTGTATGAGTCATATATGTGTATG  650

seq1  TATGTATGTGTGTGCATATGTATATATATACACATATATACATATAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTGTGTGCATATGTATATATATACACATATATACATATAATTT  700

seq1  TAATTTTGAGTAGTTAGCAAAACAACTAGATAAAACTAATTCTAATTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGAGTAGTTAGCAAAACAACTAGATAAAACTAATTCTAATTGTT  750

seq1  ATCTAGTACTATATATCACTTATTAAGTCAACTAATATAAATG-TTTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCTAGTACTATATATCACTTATTAAGTCAACTAATATAAATGTTTTTAT  800

seq1  TTAATAAATCTTTGATATTGGTGTATA-TTTTCCACTATTAGTACCTCTA  848
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAATAAATCTTTGATATTGGTGTATATTTTTCCACTATTAGTACCTCTA  850

seq1  ATTTGGACCAGTCTTCTTTCAAGTGTTCATTGGCCCCATGGAGCTGGAGG  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTTGGACCAGTCTTCTTTC-AGTGTTCATTGGCCCCATGGAGCTGGAGG  899

seq1  TGGCTGTAGTGGATAATGTAACTATACCATGGGATAACGATGGAAAATCT  948
      ||||||||| ||||||||||||||||||||||||| ||||||| ||||||
seq2  TGGCTGTAGGGGATAATGTAACTATACCATGGGAT-ACGATGG-AAATCT  947

seq1  GAGAAAGATACATGTACTAGATAGGGATGACATGAAAC  986
      ||||||||| | |||||| |||| ||||||| ||||||
seq2  GAGAAAGAT-CCTGTACT-GATATGGATGACTTGAAAC  983

seq1: chr18_44301108_44302223
seq2: B6Ng01-033P14.g_70_1167 (reverse)

seq1  TCACTAAAACAATAAGATTCAACAAGAATGACATTTTTCATATTTCAGCA  50
      ||||||||   |||||||   ||||||||||||||||   || |||||||
seq2  TCACTAAA--CATAAGAT--CACAAGAATGACATTTT--CTAATTCAGCA  44

seq1  TTTCATTATCACGTGGATATAATGTTAAGTGAAGTTGTGCTGTTTTCATC  100
      ||||||||||||| |||||||  | ||||||||| |||||||||||||||
seq2  TTTCATTATCACGAGGATATA--GGTAAGTGAAG-TGTGCTGTTTTCATC  91

seq1  TCTGTGAGAAGTGTCCCATTCTATGCCATAGACAGAGCTGAGTAGAACAA  150
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TC-GTGAGAAGTGTCCCATTCTATGCCATAGA-AGAGCTGAGTAGAACAA  139

seq1  GTCATTTTTGTCTCCCATTTCCTTTCATGGGTCATTTATGGTGATATAGT  200
      |||| |||||||| |||||||||||||| |||||||||||||||||||||
seq2  GTCA-TTTTGTCT-CCATTTCCTTTCAT-GGTCATTTATGGTGATATAGT  186

seq1  AATTAATTATCTATGTGTTATGTTTTGTTGATGGTTGTGTATACCTATTG  250
      |||||| ||||||||||||||||||   ||||||||||||||||||||||
seq2  AATTAA-TATCTATGTGTTATGTTT--GTGATGGTTGTGTATACCTATTG  233

seq1  TCCTAGGAAATAGGCAACTATAGAGGTATATGTTACTCACTAGAATAGTG  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCTAGGAAATAGGCAACTATAGAGGTATATGTAACTCACTAGAATAGTG  283

seq1  TGATTAGTTTTACTGGAATATAAGTGATCAAACATAGTTGACTTAGAAAA  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGATTAGTTTTACTGGAATATAAGTGATCAAACATAGTTGAC-TAGAAAA  332

seq1  TAAATCTTAGTATCTATACTTTTTATTGGAACTGAATAAGTGTGTAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTAGTATCTATACTTTTTATTGGAACTGAATAAGTGTGTAGAGT  382

seq1  TTTCCTTCTAATAAATCATTTTGTTGTGAACATTTCCGCAAAATACCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTAATAAATCATTTTGTTGTGAACATTTCCGCAAAATACCATT  432

seq1  TTACAGTAAAAAAATTCAAAAATCAATCTTTGCACAACTTAGATTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAAAAAAATTCAAAAATCAATCTTTGCACAACTTAGATTTTTTT  482

seq1  CTTTCATGCTGAGGTCACAAGTCACCATTTCTGTCCTTAAACAAAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGCTGAGGTCACAAGTCACCATTTCTGTCCTTAAACAAAAATAT  532

seq1  AAATAACTGAAAGATAGGCAATTGAAATTCTGATTTGTGGTGACCATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTGAAAGATAGGCAATTGAAATTCTGATTTGTGGTGACCATTCA  582

seq1  GAATACTGTGTCTGTATAATTTAAAACCCATACAAAGCATGGAAAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGTGTCTGTATAATTTAAAACCCATACAAAGCATGGAAAGGCAG  632

seq1  GTTTCAGAAAGATTGACCAAACAAGTTTACCACCCCCACAATAGGAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAAAGATTGACCAAACAAGTTTACCACCCCCACAATAGGAACCA  682

seq1  CTAAAACATAAAACTCACAAGAGTATTAAAATAATTGATTTCAAAACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACATAAAACTCACAAGAGTATTAAAATAATTGATTTCAAAACTTG  732

seq1  CTATGTAGACAGGATGAATTAGTAAGATAGTGGGAGAAAGAGATGAGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGACAGGATGAATTAGTAAGATAGTGGGAGAAAGAGATGAGGGC  782

seq1  CACATCTGTAGTGATCCTAAACATCACTGCCTATCTTAGTTATTGCTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTAGTGATCCTAAACATCACTGCCTATCTTAGTTATTGCTGTC  832

seq1  CTAAAACAATGACCAAAAGCGACTTTGGGGAGAAAGGATTTATTTCAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAATGACCAAAAGCGACTTTGGGGAGAAAGGATTTATTTCAACT  882

seq1  TACAGTGCTCCATCACAGACCATCACTGAGGGAAGTCAAGGCAGAAATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGCTCCATCACAGACCATCACTGAGGGAAGTCAAGGCAGAAATCT  932

seq1  GGAGATAGAAAATGCAGCAGAAGCCGTGAAGGAGTGCTGCTTACTAGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAGAAAATGCAGCAGAAGCCGTGAAGGAGTGCTGCTTACTAGTTT  982

seq1  GCTCTATTTGGGTTGCTTAGCCTGCCTTAAACCATCTAGAGCCAACCAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTTGGGTTGCTTAGCCTGCCTTAAACCATCTAGAGCCAACCAAG  1032

seq1  ATTGGCACCACCCAGCTATCTTATCTTCTAAGCTTAATTAAGGAAGTCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACCACCCAGCTATCTTATCTTCTAAGCTTAATTAAGGAAGTCTC  1082

seq1  ACAGGTCTCTGAATTC  1116
      ||||||||||||||||
seq2  ACAGGTCTCTGAATTC  1098