BAC Information

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BAC

Clone NameB6Ng01-034J12
Chromosome18 (Build37)
Map Location 62,391,349 - 62,521,467
singlet/doubletdoublet
Overlap geneHtr4
Upstream genePde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
Downstream geneFbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034J12.bB6Ng01-034J12.g
ACCDH863299DH863300
length1,0351,097
definitionDH863299|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J12, 5' end.DH863300|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,520,397 - 62,521,467)(62,391,349 - 62,392,462)
sequence
gaattctcaaataataaaaatatttgaaaagatggaaagcaatagagaaa
catacttggtatcaacctctggccttcacatatgcaaacacatgtgtgca
cacatgcccacgtgtacatgtacacatatattcacatatacttacacata
tacatatacttacacatatacctgcacacacacactctaaaggaaaagaa
atgcctccaatgtagtctgtgttgatccacatgaatgaatcatgagtgat
ttgtcacattcttaagaaggtgacaggcacaaagaatattaaacactgaa
gcctggatacagtgttttccaccgcaaacacaggagccccaaagcaaagg
gtctttcattttccagagcaaatcaactgggcaatcaaagctgcctgtct
cttcctttagcctgtgagctccatgttcttcaatcactcttttcttctcc
atctcagtttagtgtatggaccttattactcagcattctttccctctggc
cagtatctgggtttaatcagcaagaatcatcatcaagtgaaagtatttct
ttattctaaagggacacaggttgatagtagctgtattgctgtactaaatt
tcttagaccctgtaaacttccacaagcagaccactcataaaataattctt
tccactcatacattcacagtgtcagagacttgaatgcgagtttgaggggt
gatgacagctcccagctatgctagtccaaagtggtatgccatccctcact
gctctaaatatccctcatgggttcaccttcattttcctctggcatgttca
cagtttcagcctctgcttgatggagagtatcatattcacaatgaactgaa
ctttgtaatcatctacatgtcactcaagatggacaagaatcattgaagtc
aagtagggcttgttggattcaatacaaatcagtgaatttattaagcatac
taattgttcctcctagataggaagcatctctctaaggccttgaaatgtta
ttatatggcaatgaagctagagccaacctcattca
gaattccctgctggtcagcagcctgaacttctacctacccttctccagtg
gtagctctcacggtgtcctgggtgaccatggaaagccagggtgggatcct
agagacggtgaaggtgcttaaacacaagctccaaacccaggtcccctcaa
gaggctctctttcttttctgacagggccgtttgctccccacccccacccc
cttgaagggtacttgcgttggtgtttgacacacctgggttctgctctgag
tagcaacagtcactggccatacgaaccaggaaaccatcttctctgggccc
tggtttcctttcctgtaaggtaaaaatgataagctctgttttgcctactt
cactgggttattttgaagaggagaaaattactccgtagatcaatcatttc
tgaaacatgtattgatcgctcagccatctgccagcctctgggggaataaa
agcccttgctcagttgtcatgtgttacgcaatatgacaacctcgggcaga
gaaacccacccctggttgggccaggttgcatgcatgttttgtttcacttt
gcatatgtctggcctggtccctaacagatacttttgctattattcaacta
tggatgaataggtctccaaacggcagacaaagaggagatggtgccaatgt
ataaagcaatctgaaatactttacctgagatccctaggtcttcttacaga
tcagaagttatccccccacagtgggatgctagttctctccagttccccgg
actagggatgaaggagataaaagggaaaggagctgatctagcagtcagct
ttggggagaagtaagcatggggatttgtgggtgcctgaagaacccagtgc
caaacagatggcactcagtgcaaagcattagagagttcaaggaaagctta
tttgaaagaggattcactaagggtctgtggccatccagggccacagtaag
acttcacaatgaaggtgagtgtgcccccattgtgaacacagttgttactg
aattaaagaccatgcatggtcatgcaaacgaactgggaagcgggactgat
ccatcatgggaggccagaatgtctgtctaggaagtacaactccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62520397_62521467
seq2: B6Ng01-034J12.b_44_1078 (reverse)

seq1  TGAATTGAGGTTTGAGTCCTAGCTTCATACTGCCATATTAATTTAACCAT  50
      |||| |||||||   |  ||||||||||  ||||||| ||||   | |||
seq2  TGAA-TGAGGTT--GGCTCTAGCTTCAT--TGCCATA-TAAT---AACAT  41

seq1  TTCAAAGGCTTTAGAAAGAATTTGCTTCCTTACTCAGGGAGAGACAATTA  100
      ||| ||||| ||||| |||   ||||||||   ||  ||||  |||||||
seq2  TTC-AAGGCCTTAGAGAGA---TGCTTCCT--ATCTAGGAGGAACAATTA  85

seq1  GTAATGCCTAAATAATATCAACTTGAATTTTGTATTGAAT-CAACAAGAC  149
      || ||| || |||||  |||   |||  |||||||||||| |||||||  
seq2  GT-ATG-CTTAATAAATTCA--CTGA--TTTGTATTGAATCCAACAAG--  127

seq1  CCCTTAACTTTGAACTTCAATGATTCTTGTCCATTCCTTGAGTGACAATG  199
      ||||  ||||   |||||||||||||||||||||  |||||||||| |||
seq2  CCCT--ACTT--GACTTCAATGATTCTTGTCCAT--CTTGAGTGAC-ATG  170

seq1  TAGATGATTACAAAGTTCAGGTTCATTGTTGATATGATACTCTTCAATCA  249
      ||||||||||||||||||| |||||||||  ||||||||||| || ||||
seq2  TAGATGATTACAAAGTTCA-GTTCATTGTGAATATGATACTC-TCCATCA  218

seq1  AGCAGGAGGCTGAAACTGTGAACATGCCAGAGGAAAATGAAGGTGAACCC  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCA-GAGGCTGAAACTGTGAACATGCCAGAGGAAAATGAAGGTGAACCC  267

seq1  AATGAAGGGATATATAAGAGCAGTGAGGGATGGCATACCACCTTGGACTA  349
       ||| |||||||| | ||||||||||||||||||||||||| ||||||||
seq2  -ATG-AGGGATAT-TTAGAGCAGTGAGGGATGGCATACCACTTTGGACTA  314

seq1  GCAATAGCTGGGAGCTGTCATCACCCCTCAAACCTCGCATTCAAGTCTCT  399
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GC-ATAGCTGGGAGCTGTCATCACCCCTCAAA-CTCGCATTCAAGTCTCT  362

seq1  GACACTGTGAATGTATGAGTGGAAAGAATTATTTTATGAGTGGTCTGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTGAATGTATGAGTGGAAAGAATTATTTTATGAGTGGTCTGCTT  412

seq1  GTGGAAGTTTACAGGGTCTAAGAAATTTAGTACAGCAATACAGCTACTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGTTTACAGGGTCTAAGAAATTTAGTACAGCAATACAGCTACTAT  462

seq1  CAACCTGTGTCCC-TTAGAATAAAGAAATACTTTCACTTGATGATGATTC  548
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTGTCCCTTTAGAATAAAGAAATACTTTCACTTGATGATGATTC  512

seq1  TTGCTGATTAAACCCAGATACTGGCCAGAGGGAAAGAATGCTGAGTAATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATTAAACCCAGATACTGGCCAGAGGGAAAGAATGCTGAGTAATA  562

seq1  AGGTCCATACACTAAACTGAGATGGAGAAGAAAAGAGTGATTGAAGAACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCATACACTAAACTGAGATGGAGAAGAAAAGAGTGATTGAAGAACA  612

seq1  TGGAGCTCACAGGCTAAAGGAAGAGACAGGCAGCTTTGATTGCCCAGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCACAGGCTAAAGGAAGAGACAGGCAGCTTTGATTGCCCAGTTG  662

seq1  ATTTGCTCTGGAAAATGAAAGACCCTTTGCTTTGGGGCTCCTGTGTTTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCTGGAAAATGAAAGACCCTTTGCTTTGGGGCTCCTGTGTTTGC  712

seq1  GGTGGAAAACACTGTATCCAGGCTTCAGTGTTTAATATTCTTTGTGCCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAAACACTGTATCCAGGCTTCAGTGTTTAATATTCTTTGTGCCTG  762

seq1  TCACCTTCTTAAGAATGTGACAAATCACTCATGATTCATTCATGTGGATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCTTAAGAATGTGACAAATCACTCATGATTCATTCATGTGGATC  812

seq1  AACACAGACTACATTGGAGGCATTTCTTTTCCTTTAGAGTGTGTGTGTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGACTACATTGGAGGCATTTCTTTTCCTTTAGAGTGTGTGTGTGC  862

seq1  AGGTATATGTGTAAGTATATGTATATGTGTAAGTATATGTGAATATATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATATGTGTAAGTATATGTATATGTGTAAGTATATGTGAATATATGT  912

seq1  GTACATGTACACGTGGGCATGTGTGCACACATGTGTTTGCATATGTGAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGTACACGTGGGCATGTGTGCACACATGTGTTTGCATATGTGAAG  962

seq1  GCCAGAGGTTGATACCAAGTATGTTTCTCTATTGCTTTCCATCTTTTCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGTTGATACCAAGTATGTTTCTCTATTGCTTTCCATCTTTTCAA  1012

seq1  ATATTTTTATTATTTGAGAATTC  1071
      |||||||||||||||||||||||
seq2  ATATTTTTATTATTTGAGAATTC  1035

seq1: chr18_62391349_62392462
seq2: B6Ng01-034J12.g_70_1166

seq1  GAATTCCCTGCTGGTCAGCAGCCTGAACTTCTACCTACCCTTCTCCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCTGGTCAGCAGCCTGAACTTCTACCTACCCTTCTCCAGTG  50

seq1  GTAGCTCTCACGGTGTCCTGGGTGACCATGGAAAGCCAGGGTGGGATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTCACGGTGTCCTGGGTGACCATGGAAAGCCAGGGTGGGATCCT  100

seq1  AGAGACGGTGAAGGTGCTTAAACACAAGCTCCAAACCCAGGTCCCCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACGGTGAAGGTGCTTAAACACAAGCTCCAAACCCAGGTCCCCTCAA  150

seq1  GAGGCTCTCTTTCTTTTCTGACAGGGCCGTTTGCTCCCCACCCCCACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCTCTTTCTTTTCTGACAGGGCCGTTTGCTCCCCACCCCCACCCC  200

seq1  CTTGAAGGGTACTTGCGTTGGTGTTTGACACACCTGGGTTCTGCTCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGGTACTTGCGTTGGTGTTTGACACACCTGGGTTCTGCTCTGAG  250

seq1  TAGCAACAGTCACTGGCCATACGAACCAGGAAACCATCTTCTCTGGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACAGTCACTGGCCATACGAACCAGGAAACCATCTTCTCTGGGCCC  300

seq1  TGGTTTCCTTTCCTGTAAGGTAAAAATGATAAGCTCTGTTTTGCCTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCTTTCCTGTAAGGTAAAAATGATAAGCTCTGTTTTGCCTACTT  350

seq1  CACTGGGTTATTTTGAAGAGGAGAAAATTACTCCGTAGATCAATCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTTATTTTGAAGAGGAGAAAATTACTCCGTAGATCAATCATTTC  400

seq1  TGAAACATGTATTGATCGCTCAGCCATCTGCCAGCCTCTGGGGGAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATGTATTGATCGCTCAGCCATCTGCCAGCCTCTGGGGGAATAAA  450

seq1  AGCCCTTGCTCAGTTGTCATGTGTTACGCAATATGACAACCTCGGGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGCTCAGTTGTCATGTGTTACGCAATATGACAACCTCGGGCAGA  500

seq1  GAAACCCACCCCTGGTTGGGCCAGGTTGCATGCATGTTTTGTTTCACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCACCCCTGGTTGGGCCAGGTTGCATGCATGTTTTGTTTCACTTT  550

seq1  GCATATGTCTGGCCTGGTCCCTAACAGATACTTTTGCTATTATTCAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTCTGGCCTGGTCCCTAACAGATACTTTTGCTATTATTCAACTA  600

seq1  TGGATGAATAGGTCTCCAAACGGCAGACAAAGAGGAGATGGTGCCAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAATAGGTCTCCAAACGGCAGACAAAGAGGAGATGGTGCCAATGT  650

seq1  ATAAAGCAATCTGAAATAC-TTACCTGAGATCCCTAGGTCTTCTTACAGA  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAAAGCAATCTGAAATACTTTACCTGAGATCCCTAGGTCTTCTTACAGA  700

seq1  TCAGAAGTTATCCCCCCACAGTGGGATGCTAGTTCTCTCCAGTTCCCCGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTTATCCCCCCACAGTGGGATGCTAGTTCTCTCCAGTTCCCCGG  750

seq1  ACTAGGGATGAAGGAGATAAAAGGGAAAGGAGCTGATCTAGCAGTCAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGATGAAGGAGATAAAAGGGAAAGGAGCTGATCTAGCAGTCAGCT  800

seq1  TTGGGGAGAAGTAAGCATGGGGATTTGTGGGTGCCTGAAGAACCCAGTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAAGTAAGCATGGGGATTTGTGGGTGCCTGAAGAACCCAGTGC  850

seq1  CAAACAGATGGCACTCAGTGCAAAGCATTAGAGAGGTTCAAGGAAGGCTT  899
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  CAAACAGATGGCACTCAGTGCAAAGCATTAGAGA-GTTCAAGGAAAGCTT  899

seq1  ATTTGAAAGGAGGATTCACAAAGGGTCTGTGGCCATCCAGGGGCCACAGT  949
      |||||||| |||||||||| ||||||||||||||||||| ||||||||||
seq2  ATTTGAAA-GAGGATTCACTAAGGGTCTGTGGCCATCCA-GGGCCACAGT  947

seq1  AGGACTTCACAATAGAGGTGAAGTGTGCCCCCCATGTGAAACACAGGTTG  999
      | |||||||||||  ||||| |||||||||||  |||| |||||| ||||
seq2  AAGACTTCACAATGAAGGTG-AGTGTGCCCCCATTGTG-AACACA-GTTG  994

seq1  TTACCTGAGATAAAAGACCCATGCATGGGTCATGCAAAACAGACTGGGGA  1049
      ||| |||| || ||||| |||||||| |||||||| ||||  ||| ||||
seq2  TTA-CTGA-ATTAAAGA-CCATGCAT-GGTCATGC-AAACGAACT-GGGA  1038

seq1  AGACAGGACTGATCCAGTCATGGGAGCCAAAGATGTCTGTCATAGGGGAA  1099
      || | ||||||||||| ||||||||| | |  ||||||||| ||  ||||
seq2  AG-CGGGACTGATCCA-TCATGGGAGGCCAGAATGTCTGTC-TA--GGAA  1083

seq1  GTAACAACTTCCTCC  1114
      || |||||| |||||
seq2  GT-ACAACTCCCTCC  1097