BAC Information

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BAC

Clone NameB6Ng01-036B18
Chromosome18 (Build37)
Map Location 81,072,356 - 81,194,375
singlet/doubletdoublet
Overlap geneAtp9b, Sall3, LOC665124
Upstream geneLOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1
Downstream geneLOC100039458, LOC100040871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036B18.bB6Ng01-036B18.g
ACCDH864393DH864394
length96263
definitionDH864393|Mus musculus domesticus DNA, BAC clone: B6Ng01-036B18, 5' end.DH864394|Mus musculus domesticus DNA, BAC clone: B6Ng01-036B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,072,356 - 81,072,451)(81,194,113 - 81,194,375)
sequence
gaattcacactaccaccttaaattcttgtatggactaagccttaaactgt
tttgttttgttttgttttttttttggtggtggtgggtggtgggtgg
acttttgtgccatcttttcctcttctctgatttgacaccaagaaattgaa
agcctgtacgtatgtcttgcaaaagaccatgcgttgcaattgagtacaaa
gcaagcaagccaaaaaataaatagaaagaaggtgggactgagttttagaa
accagactgtgaagctttgcacgtcctttttccagtcagcgcggagcaat
gggcatctctcaggacaactggcacaagcgctgcaagaccgggggttgga
ggtggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_81072356_81072451
seq2: B6Ng01-036B18.b_42_137

seq1  GAATTCACACTACCACCTTAAATTCTTGTATGGACTAAGCCTTAAACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTACCACCTTAAATTCTTGTATGGACTAAGCCTTAAACTGT  50

seq1  TTTGTTTTGTTTTGTTTTTTTTTTGGTGGTGGTGGGTGGTGGGTGG  96
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTTTTTTTGGTGGTGGTGGGTGGTGGGTGG  96

seq1: chr18_81194113_81194375
seq2: B6Ng01-036B18.g_73_335 (reverse)

seq1  TCCCCTCCCCACCTCCAACCCCCGGTCTTGCAGCGCTTGTGCCAGTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCACCTCCAACCCCCGGTCTTGCAGCGCTTGTGCCAGTTGTC  50

seq1  CTGAGAGATGCCCATTGCTCCGCGCTGACTGGAAAAAGGACGTGCAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGATGCCCATTGCTCCGCGCTGACTGGAAAAAGGACGTGCAAAGC  100

seq1  TTCACAGTCTGGTTTCTAAAACTCAGTCCCACCTTCTTTCTATTTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTCTGGTTTCTAAAACTCAGTCCCACCTTCTTTCTATTTATTTT  150

seq1  TTGGCTTGCTTGCTTTGTACTCAATTGCAACGCATGGTCTTTTGCAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTGCTTGCTTTGTACTCAATTGCAACGCATGGTCTTTTGCAAGAC  200

seq1  ATACGTACAGGCTTTCAATTTCTTGGTGTCAAATCAGAGAAGAGGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTACAGGCTTTCAATTTCTTGGTGTCAAATCAGAGAAGAGGAAAAG  250

seq1  ATGGCACAAAAGT  263
      |||||||||||||
seq2  ATGGCACAAAAGT  263