BAC Information

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BAC

Clone NameB6Ng01-036K13
Chromosome18 (Build37)
Map Location 46,234,501 - 46,375,069
singlet/doubletdoublet
Overlap geneTrim36, LOC100042905
Upstream geneLOC225457, LOC100042900, Kcnn2
Downstream genePggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036K13.bB6Ng01-036K13.g
ACCDH864762DH864763
length931829
definitionDH864762|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K13, 5' end.DH864763|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,374,138 - 46,375,069)(46,234,501 - 46,235,326)
sequence
gaattcaactgtgggaagccatgtggtggagggaggaatgagggatgggg
ctagctcaggatggctcaaggaccacagacccattcatggccctcagcag
ctgcatggacccctggcctcaagacggcatcaggtggctatgctcatgta
ggtgctggacactgaacttgaatcttctagaaaaaccatctgtttctaac
tgttgggccatctgtccaaccccaggaaagcagtttataatgaagatttt
tcttcactcgatgacaattggcaagtatagagttttcacaagagaccctt
cagcattgctggtctcagtgttgatactttgaacagtatgtaatccttca
ttgagtattttctttggtggtaaagttttctgagaatatcatctgtctgt
gttaacattttctcttcatttttttgaaaaatatacattcacttttggga
acggagtttgatattaatctatgtggttttagtttgcttttgttcttagt
aggtaaaaatgaagcaacttttaactgggtggctagtgacagttccacca
tctgtctttaatatcaatgcagaggatttcaggagtctggacatgctctt
cattttgtcttcctgtcatctttgagaggtttaatgctctatattgttcc
tcacacataaatgatgagatacaaatgcccccaagcactaaggacaaacc
tgcatctccctcctaggcagtgaagtggctctaaaggcttcactttctct
tttcccgcttccttggcctccgtgggagtccagagtaagggttccttgct
acagatttcctgggagcaaatgaacaacactttttgtaacagcagcctct
tcatggaggaaatgggcagccagtgtggccagtggcaaaggtgtcctcca
gatcggagatcttggccattagaactgttag
gaattctacagcgtagtagagtgactattcgcaatagcccaactattgaa
ttaacaaacctagaagcgaggaacgcatgagctctgtgatgtttaatcat
gcttgtcagcttcacacacctcacatgagggaagctcaattgaggaactg
cccgaatcagattgccctggggtcctgtttatgaggcattttcttgattg
tcagttgatgtgggaaacccagctcactgcgggcagtatcatccctaggc
aggtaagccttatgtgtataagaaaggtggctgattaaaccagggaaaag
cactccagtaagcagtattccaccatggtctctacttcagttcctgccct
aagtccttttcttggcttccttttgttgtaaactataagccaaacaaact
ctttctaccctgaagttgcctttggccagtattttatcacagcaacagaa
agcagactgagagagttttctaacataaagaaacagtaaggagaagaata
taataaattcatttacctgagtattaaaaatatcactctacctgggtatg
gtggtgcacacaattagtctcagcccttggatggcagaggtaagaattta
aagccagcctagtatacatacagagactgttccaaataaattaattaaac
aagtaaataaataagtaaaatggtcacactttaaaccaaaatgtgcatag
ttcctgtatataatttaaaaaccaaaaatttcaaactcaattattataat
ttaaataagtataaaaattgtcccaaaggtatagtggtttgtttctcaaa
ttaatggcttacacctttattagccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_46374138_46375069
seq2: B6Ng01-036K13.b_45_975 (reverse)

seq1  CTAACAGTTCTTAGTGCCAGGATCTCCGATCT-GAGGACCCCCTTTGCCA  49
      ||||||||||| |  |||| |||||||||||| ||||| | |||||||||
seq2  CTAACAGTTCTAATGGCCAAGATCTCCGATCTGGAGGA-CACCTTTGCCA  49

seq1  CCTGGCCACACTGGCTGCCCATCTCCTCCATGAAGATGCTGCTGTTAC-A  98
       ||||||||||||||||||||| ||||||||||||| ||||||||||| |
seq2  -CTGGCCACACTGGCTGCCCATTTCCTCCATGAAGAGGCTGCTGTTACAA  98

seq1  AAAGTGTTGTTCATTTGCTCCCAGGAAATTCTGTAGCAAGGAACCCTTAC  148
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAGTGTTGTTCATTTGCTCCCAGGAAA-TCTGTAGCAAGGAACCCTTAC  147

seq1  TCTGGACTCCCACGGAGGCCAAGGAAGCGGGAAAAGAGAAAGTGAAGCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTCCCACGGAGGCCAAGGAAGCGGGAAAAGAGAAAGTGAAGCCT  197

seq1  TTAGAGCCACTTCACTGCCTAGGAGGGAGATGCAGGTTTGTCCTTAGTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCACTTCACTGCCTAGGAGGGAGATGCAGGTTTGTCCTTAGTGC  247

seq1  TTGGGGGCATTTGTATCTCATCATTTATGTGTGAGGAACAATATAGAGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCATTTGTATCTCATCATTTATGTGTGAGGAACAATATAGAGCA  297

seq1  TTAAACCTCTCAAAGATGACAGGAAGACAAAATGAAGAGCATGTCCAGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTCTCAAAGATGACAGGAAGACAAAATGAAGAGCATGTCCAGAC  347

seq1  TCCTGAAATCCTCTGCATTGATATTAAAGACAGATGGTGGAACTGTCACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAATCCTCTGCATTGATATTAAAGACAGATGGTGGAACTGTCACT  397

seq1  AGCCACCCAGTTAAAAGTTGCTTCATTTTTACCTACTAAGAACAAAAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCCAGTTAAAAGTTGCTTCATTTTTACCTACTAAGAACAAAAGCA  447

seq1  AACTAAAACCACATAGATTAATATCAAACTCCGTTCCCAAAAGTGAATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAACCACATAGATTAATATCAAACTCCGTTCCCAAAAGTGAATGT  497

seq1  ATATTTTTCAAAAAAATGAAGAGAAAATGTTAACACAGACAGATGATATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCAAAAAAATGAAGAGAAAATGTTAACACAGACAGATGATATT  547

seq1  CTCAGAAAACTTTACCACCAAAGAAAATACTCAATGAAGGATTACATACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAACTTTACCACCAAAGAAAATACTCAATGAAGGATTACATACT  597

seq1  GTTCAAAGTATCAACACTGAGACCAGCAATGCTGAAGGGTCTCTTGTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGTATCAACACTGAGACCAGCAATGCTGAAGGGTCTCTTGTGAA  647

seq1  AACTCTATACTTGCCAATTGTCATCGAGTGAAGAAAAATCTTCATTATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATACTTGCCAATTGTCATCGAGTGAAGAAAAATCTTCATTATAA  697

seq1  ACTGCTTTCCTGGGGTTGGACAGATGGCCCAACAGTTAGAAACAGATGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTCCTGGGGTTGGACAGATGGCCCAACAGTTAGAAACAGATGGT  747

seq1  TTTTCTAGAAGATTCAAGTTCAGTGTCCAGCACCTACATGAGCATAGCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGAAGATTCAAGTTCAGTGTCCAGCACCTACATGAGCATAGCCA  797

seq1  CCTGATGCCGTCTTGAGGCCAGGGGTCCATGCAGCTGCTGAGGGCCATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCCGTCTTGAGGCCAGGGGTCCATGCAGCTGCTGAGGGCCATGA  847

seq1  ATGGGTCTGTGGTCCTTGAGCCATCCTGAGCTAGCCCCATCCCTCATTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTGTGGTCCTTGAGCCATCCTGAGCTAGCCCCATCCCTCATTCC  897

seq1  TCCCTCCACCACATGGCTTCCCACAGTTGAATTC  932
      ||||||||||||||||||||||||||||||||||
seq2  TCCCTCCACCACATGGCTTCCCACAGTTGAATTC  931

seq1: chr18_46234501_46235326
seq2: B6Ng01-036K13.g_66_894

seq1  GAATTCTACAGCGTAGTAGAGTGACTATTCGCAATAGCCCAACTATTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGCGTAGTAGAGTGACTATTCGCAATAGCCCAACTATTGAA  50

seq1  TTAACAAACCTAGAAGCGAGGAACGCATGAGCTCTGTGATGTTTAATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAACCTAGAAGCGAGGAACGCATGAGCTCTGTGATGTTTAATCAT  100

seq1  GCTTGTCAGCTTCACACACCTCACATGAGGGAAGCTCAATTGAGGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCAGCTTCACACACCTCACATGAGGGAAGCTCAATTGAGGAACTG  150

seq1  CCCGAATCAGATTGCCCTGGGGTCCTGTTTATGAGGCATTTTCTTGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAATCAGATTGCCCTGGGGTCCTGTTTATGAGGCATTTTCTTGATTG  200

seq1  TCAGTTGATGTGGGAAACCCAGCTCACTGCGGGCAGTATCATCCCTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGATGTGGGAAACCCAGCTCACTGCGGGCAGTATCATCCCTAGGC  250

seq1  AGGTAAGCCTTATGTGTATAAGAAAGGTGGCTGATTAAACCAGGGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCCTTATGTGTATAAGAAAGGTGGCTGATTAAACCAGGGAAAAG  300

seq1  CACTCCAGTAAGCAGTATTCCACCATGGTCTCTACTTCAGTTCCTGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGTAAGCAGTATTCCACCATGGTCTCTACTTCAGTTCCTGCCCT  350

seq1  AAGTCCTTTTCTTGGCTTCCTTTTGTTGTAAACTATAAGCCAAACAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTTTCTTGGCTTCCTTTTGTTGTAAACTATAAGCCAAACAAACT  400

seq1  CTTTCTACCCTGAAGTTGCCTTTGGCCAGTATTTTATCACAGCAACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACCCTGAAGTTGCCTTTGGCCAGTATTTTATCACAGCAACAGAA  450

seq1  AGCAGACTGAGAGAG-TTTCTAACATAAAGAAACAGTAAGGAGAAGAATA  499
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCAGACTGAGAGAGTTTTCTAACATAAAGAAACAGTAAGGAGAAGAATA  500

seq1  TAATAAATTCATTTACCTGAGTATT-AAAATATCACTCTACCTGGGTATG  548
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAATAAATTCATTTACCTGAGTATTAAAAATATCACTCTACCTGGGTATG  550

seq1  GTGGTGCACACAATTAGTCTCAGCCCTTGGATGGCAGAGGTAAGAATTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCACACAATTAGTCTCAGCCCTTGGATGGCAGAGGTAAGAATTTA  600

seq1  AAGCCAGCCTAGTATACATACAGAGACTGTTTCAAATAAATAAATAAAAC  648
      ||||||||||||||||||||||||||||||| ||||||||| ||| ||||
seq2  AAGCCAGCCTAGTATACATACAGAGACTGTTCCAAATAAATTAATTAAAC  650

seq1  AAGTAAATAAATAAGTAAAAT-GTCACACTTTAAACCAAAATGTGCATAG  697
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGTAAATAAATAAGTAAAATGGTCACACTTTAAACCAAAATGTGCATAG  700

seq1  TTACTGTATATTAATTAAAAAACAAAAATTTCAAACTCAATTATAATAA-  746
      || |||||||| | ||||||| |||||||||||||||||||||| |||| 
seq2  TTCCTGTATATAATTTAAAAACCAAAAATTTCAAACTCAATTATTATAAT  750

seq1  TTAAATAAGTATAAAAATTTGTCCAAAAGGTATAGTGGTTTGTTTCTCAA  796
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  TTAAATAAGTATAAAAA-TTGTCCCAAAGGTATAGTGGTTTGTTTCTCAA  799

seq1  ATTAATGCATTACACTTTATTTAGCCTTCT  826
      |||||||  |||||| ||  ||||||||||
seq2  ATTAATGGCTTACACCTTTATTAGCCTTCT  829