BAC Information

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BAC

Clone NameB6Ng01-036N09
Chromosome18 (Build37)
Map Location 11,751,614 - 11,904,735
singlet/doubletdoublet
Overlap geneLOC665310, LOC100040148, Rbbp8
Upstream geneMib1, LOC665296, 1010001N08Rik, Gata6
Downstream geneLOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3, 2810439F02Rik, Cabyr, LOC665356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036N09.bB6Ng01-036N09.g
ACCDH864888DH864889
length963390
definitionDH864888|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N09, 5' end.DH864889|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,904,111 - 11,904,735)(11,751,614 - 11,752,009)
sequence
gaattccaagtttgggttgtttttaaagaagtaagagtatacagattttg
cccaagccacatggggaattcttcccgtggatcagaactagtgtagggaa
tttgggcccagaggtgcagggagcccctgctgtgcaaggacaggccaagc
ttgctcccttggtgtaggcagagaggcagggctgctgcctccaacagaag
atgcagggaggttgtatgaaaagaaaatgctttaggaaaaaatttaaaag
gtcttgcaggataactcattttgttcgaacatgggctccacaggaattct
gggttaaatatcttggcatgacagattaggctcatagaatatttgtttag
tttactacatttgttttgaattgttttaattatcaaaatgggtgtgattt
tgagttttgtggttacattattcccctgggagagaagtcaagctaaaggt
ttttctggttactggctcaaggatgttctactttgggagaaaggctctac
ttttgtgtttacagtgaaggaggataagctctggacccttccggagttat
atggatcagatatgacagagggaaaccccctgaaaaactagagaaactca
aaagaatcaaacaggacagatatcttgatggtacttaagttctgttttga
gatttgtatattgcagagtgttcatcatgctgaactgacctgtatggact
cctggtgtcatggattccaggtcgccttgcctcattcaaactttcagact
tatccagtcagaacttagacatcagagactgaataataattgttgtctta
gctttcttaaggctaaccaaatctatttccccttccgttcccctcccctt
taagatattttatcacccctgttcagcaggagaagccatggagtggcagc
ccaattccctgagtttgtattctaaagttgtcattctaggaatttgggat
ggtcataatttga
aaagataaaacagggtttatggctagggtaccatggctaagggagagggg
cagtacagtagggaatagatactctaagctaactgaacagaatgtgtaaa
aacatataaagggtggtgggttggcctaatgttgcttgtgttccagtgct
aatttggggcccccaaggctgtttaccccaaagacaaaagagtctccatg
cacttaagatactgagtgaccctgcccccagttcattgtgattggtgaat
aaagatgccaacagccaatagctggggataagagaaatgggtggggttgc
gttttggcagttgtaggggaaggagcagaggagaggagagaaggagctgc
tatggaagaggaagaatgtgccggaagggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_11904111_11904735
seq2: B6Ng01-036N09.b_48_672 (reverse)

seq1  AGATATCTGTCCTGTTTGATTCTTTTGAGTTTCTCTAGTTTTTCAGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCTGTCCTGTTTGATTCTTTTGAGTTTCTCTAGTTTTTCAGGGGG  50

seq1  TTTCCCTCTGTCATATCTGATCCATATAACTCCGGAAGGGTCCAGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTGTCATATCTGATCCATATAACTCCGGAAGGGTCCAGAGCTT  100

seq1  ATCCTCCTTCACTGTAAACACAAAAGTAGAGCCTTTCTCCCAAAGTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTCACTGTAAACACAAAAGTAGAGCCTTTCTCCCAAAGTAGAA  150

seq1  CATCCTTGAGCCAGTAACCAGAAAAACCTTTAGCTTGACTTCTCTCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGAGCCAGTAACCAGAAAAACCTTTAGCTTGACTTCTCTCCCAG  200

seq1  GGGAATAATGTAACCACAAAACTCAAAATCACACCCATTTTGATAATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAATGTAACCACAAAACTCAAAATCACACCCATTTTGATAATTAA  250

seq1  AACAATTCAAAACAAATGTAGTAAACTAAACAAATATTCTATGAGCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCAAAACAAATGTAGTAAACTAAACAAATATTCTATGAGCCTAA  300

seq1  TCTGTCATGCCAAGATATTTAACCCAGAATTCCTGTGGAGCCCATGTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATGCCAAGATATTTAACCCAGAATTCCTGTGGAGCCCATGTTCG  350

seq1  AACAAAATGAGTTATCCTGCAAGACCTTTTAAATTTTTTCCTAAAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGAGTTATCCTGCAAGACCTTTTAAATTTTTTCCTAAAGCATT  400

seq1  TTCTTTTCATACAACCTCCCTGCATCTTCTGTTGGAGGCAGCAGCCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCATACAACCTCCCTGCATCTTCTGTTGGAGGCAGCAGCCCTGC  450

seq1  CTCTCTGCCTACACCAAGGGAGCAAGCTTGGCCTGTCCTTGCACAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCCTACACCAAGGGAGCAAGCTTGGCCTGTCCTTGCACAGCAGG  500

seq1  GGCTCCCTGCACCTCTGGGCCCAAATTCCCTACACTAGTTCTGATCCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTGCACCTCTGGGCCCAAATTCCCTACACTAGTTCTGATCCACG  550

seq1  GGAAGAATTCCCCATGTGGCTTGGGCAAAATCTGTATACTCTTACTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATTCCCCATGTGGCTTGGGCAAAATCTGTATACTCTTACTTCTT  600

seq1  TAAAAACAACCCAAACTTGGAATTC  625
      |||||||||||||||||||||||||
seq2  TAAAAACAACCCAAACTTGGAATTC  625

seq1: chr18_11751614_11752009
seq2: B6Ng01-036N09.g_68_463

seq1  GAATTCAAAGATAAAACAGGGTTTATGGCTAGGGTACCATGGCTAAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATAAAACAGGGTTTATGGCTAGGGTACCATGGCTAAGGGA  50

seq1  GAGGGGCAGTACAGTAGGGAATAGATACTCTAAGCTAACTGAACAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCAGTACAGTAGGGAATAGATACTCTAAGCTAACTGAACAGAATG  100

seq1  TGTAAAAACATATAAAGGGTGGTGGGTTGGCCTAATGTTGCTTGTGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAACATATAAAGGGTGGTGGGTTGGCCTAATGTTGCTTGTGTTCC  150

seq1  AGTGCTAATTTGGGGCCCCCAAGGCTGTTTACCCCAAAGACAAAAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAATTTGGGGCCCCCAAGGCTGTTTACCCCAAAGACAAAAGAGTC  200

seq1  TCCATGCACTTAAGATACTGAGTGACCCTGCCCCCAGTTCATTGTGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCACTTAAGATACTGAGTGACCCTGCCCCCAGTTCATTGTGATTG  250

seq1  GTGAATAAAGATGCCAACAGCCAATAGCTGGGGATAAGAGAAATGGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAAGATGCCAACAGCCAATAGCTGGGGATAAGAGAAATGGGTGG  300

seq1  GGTTGCGTTTTGGCAGTTGTAGGGGAAGGAGCAGAGGAGAGGAGAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCGTTTTGGCAGTTGTAGGGGAAGGAGCAGAGGAGAGGAGAGAAGG  350

seq1  AGCTGCTATGGAAGAGGAAGAATGTGCCGGAAGGGAGGGAGGGAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTATGGAAGAGGAAGAATGTGCCGGAAGGGAGGGAGGGAGG  396