BAC Information

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BAC

Clone NameB6Ng01-037A01
Chromosome18 (Build37)
Map Location 12,908,897 - 13,022,482
singlet/doubletdoublet
Overlap geneCabyr, Osbpl1a
Upstream geneLOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3, 2810439F02Rik, LOC665356
Downstream geneLOC435556, Impact, Hrh4, EG383354, LOC665379, LOC100040358, Zfp521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037A01.bB6Ng01-037A01.g
ACCDH865008DH865009
length1,140905
definitionDH865008|Mus musculus domesticus DNA, BAC clone: B6Ng01-037A01, 5' end.DH865009|Mus musculus domesticus DNA, BAC clone: B6Ng01-037A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,021,335 - 13,022,482)(12,908,897 - 12,909,795)
sequence
gaattctccaattcatagagtaccactgaagttgagaccatgatttttat
ctctaattgaccatttttcttcaccccagttctgactaaattctgccagt
ctgacatcatttccctccagtcccctctccatcctaacacacattctccc
tggctgctgtggtaaagctcccaggatagctgtaaggaggggtgcagtgt
cctaatcccaggttccacccttcagaactaggttaggtgctcctcctgtc
ccggatttcttgttgccacattgtatcattgcatacagcacatccagagc
cctttaaaggcgcaggctcttcattgtgtctgtagcatgggcttagcatg
ttgtagattgttagtggatatctcagtgcaggagtggtgactgtagaaaa
gaaaaaccccagcttttgagcggtctaattctatactgccgtttctgctt
tacgcaaatgtataccttcttgggagctccacttccaaatctgaaacccg
agatgcgattgagcagggtcacgtgaagtgatcagtgcagggcccctccc
ccatcccagtgtccttgtaaactgccttctaaaacaaggtccctttgttg
tttatctctgctgggaggaccctcagtaaattgaattcttttttttctaa
atctttgggcctgaaggagaaattttgtagccagggcttcctcttcatgg
ccaagtgttcttagttatcagtttagaattttcaaagacactgaaacttt
tccagacatggattccaagttttctgactgagcggtgtgtgccctacaaa
tagactgaccacggatctaagggaacacgaggtactccgggacttgttaa
ataaacaccagttttgtttatcacagccctgctcagtaaagtcctcttcc
aggtgagaacagggtgtacattttagaagtagtttctttttgatctccac
cagagccttcgtcatagtttccagcagtatcatgagcatgtcagaatggg
gtgtttgtctggggaagtctgcctctgcagtctgctctacccttccatgc
tggtcagaatgggtagccaagcttctaagtggtctgcagagacagcccca
gtccttacctacgtgggtgtaagactaacactcgctctgc
gaattctgcctgcctctgcctccggagtgctaggattaaaggcgtgcgcc
accacgcctggccagccatttattttctaaggaaatgaatagtgtttagg
tggatggatatactctgttacaggtttattagctatgctaattctatgct
aattcagaggttgcacatagatccttgtgtattggtatttgaatattcac
cctaccacattgctttatgtaaaatattctgaggagtccttgctgattaa
tttacctgattgttacttttagtagagaaatgggcagaaggagtgacagt
ggagaagaaagaatgtatcaaggaacccataaaaccacctccagttccct
gcaaacccacacatatggaaaaatccacagacacagaggaggacaatgta
gctggaccactatttagcaacaaaaccactcagtttccatcagttcatgc
tgaagtacagtctgaggagacaagtgaaggagctcggggtccctctgaca
aaccgactactcctaagaccgactacaccccaccctcgtcaccacctcca
gcgcctgtctctgccgagtacgcttatgtcccagctgacccagctcagtt
tgccgctcagatgttaggtaatgtgccatctacttattctgaagttttta
atggtggacgtggcaacaagtacgcccgctgttccccaggacgtactgag
tgcagagtttgctgaagaagtcgtgctgtctgcccctctggtgtgctctt
ggagagacgtagaagtgcaggtttgtgagcaaaacatctgcgcaggtagt
tgtgggtcctgtgttctgatgttgaaccaccaaagtgcttcctctgccct
ccttgtagggtgaacaagaacttcctgctctggaagctcctgttaaccag
gttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_13021335_13022482
seq2: B6Ng01-037A01.b_44_1183 (reverse)

seq1  GCAGAGCGAGTGTTCGTACTTACACCCCAGTGAGTATGAGCTGGGGCTGT  50
      |||||||||||||| || |||||||||  ||  ||| |  ||||||||||
seq2  GCAGAGCGAGTGTTAGT-CTTACACCCACGTAGGTAAGGACTGGGGCTGT  49

seq1  GCTCTGCTGACCACTTAGAAGCGTGGCTTCCCATTCTGACCAGCCTTGAA  100
       |||||| |||||||||||||| ||||| ||||||||||||||| | |||
seq2  -CTCTGCAGACCACTTAGAAGCTTGGCTACCCATTCTGACCAGCATGGAA  98

seq1  GGGTAGAGCAGGACTGCAGAGGCAGACCTTCCCCAGACAAACACACACTT  150
      |||||||||| ||||||||||||||| ||||||||||||||||| |  ||
seq2  GGGTAGAGCA-GACTGCAGAGGCAGA-CTTCCCCAGACAAACACCCCATT  146

seq1  CTGACATGCTCATGATACTGCTGGAAAACTATGACGAAGGCTCTGGTGGA  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGACATGCTCATGATACTGCTGG-AAACTATGACGAAGGCTCTGGTGGA  195

seq1  GATTCAAAAAGAAACTAACTTCTAAAATGTACACCCCTGTTCTCACCTGG  250
      || ||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  GA-TCAAAAAGAAACT-ACTTCTAAAATGTACA-CCCTGTTCTCACCTGG  242

seq1  AAGAGGACTTTACTGAGCAGGGCTGTGATAAACAAAACTGGTGTTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACTTTACTGAGCAGGGCTGTGATAAACAAAACTGGTGTTTATTT  292

seq1  AACAAGTCCCGGAGTACCTCGTGTTCCCTTAGATCCGTGGTCAGTCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTCCCGGAGTACCTCGTGTTCCCTTAGATCCGTGGTCAGTCTATT  342

seq1  TGTAGGGCACACACCGCTCAGTCAGAAAACTTGGAATCCATGTCTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGCACACACCGCTCAGTCAGAAAACTTGGAATCCATGTCTGGAAA  392

seq1  AGTTTCAGTGTCTTTGAAAATTCTAAACTGATAACTAAGAACACTTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGTGTCTTTGAAAATTCTAAACTGATAACTAAGAACACTTGGCC  442

seq1  ATGAAGAGGAAGCCCTGGCTACAAAATTTCTCCTTCAGGCCCAAAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGGAAGCCCTGGCTACAAAATTTCTCCTTCAGGCCCAAAGATTT  492

seq1  AGAAAAAAAAGAATTCAATTTACTGAGGGTCCTCCCAGCAGAGATAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAGAATTCAATTTACTGAGGGTCCTCCCAGCAGAGATAAACA  542

seq1  ACAAAGGGACCTTGTTTTAGAAGGCAGTTTACAAGGACACTGGGATGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGACCTTGTTTTAGAAGGCAGTTTACAAGGACACTGGGATGGGG  592

seq1  GAGGGGCCCTGCACTGATCACTTCACGTGACCCTGCTCAATCGCATCTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCCCTGCACTGATCACTTCACGTGACCCTGCTCAATCGCATCTCG  642

seq1  GGTTTCAGATTTGGAAGTGGAGCTCCCAAGAAGGTATACATTTGCGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGATTTGGAAGTGGAGCTCCCAAGAAGGTATACATTTGCGTAAA  692

seq1  GCAGAAACGGCAGTATAGAATTAGACCGCTCAAAAGCTGGGGTTTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACGGCAGTATAGAATTAGACCGCTCAAAAGCTGGGGTTTTTCTT  742

seq1  TTCTACAGTCACCACTCCTGCACTGAGATATCCACTAACAATCTACAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGTCACCACTCCTGCACTGAGATATCCACTAACAATCTACAACA  792

seq1  TGCTAAGCCCATGCTACAGACACAATGAAGAGCCTGCGCCTTTAAAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGCCCATGCTACAGACACAATGAAGAGCCTGCGCCTTTAAAGGGC  842

seq1  TCTGGATGTGCTGTATGCAATGATACAATGTGGCAACAAGAAATCCGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATGTGCTGTATGCAATGATACAATGTGGCAACAAGAAATCCGGGA  892

seq1  CAGGAGGAGCACCTAACCTAGTTCTGAAGGGTGGAACCTGGGATTAGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGCACCTAACCTAGTTCTGAAGGGTGGAACCTGGGATTAGGAC  942

seq1  ACTGCACCCCTCCTTACAGCTATCCTGGGAGCTTTACCACAGCAGCCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACCCCTCCTTACAGCTATCCTGGGAGCTTTACCACAGCAGCCAGG  992

seq1  GAGAATGTGTGTTAGGATGGAGAGGGGACTGGAGGGAAATGATGTCAGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTGTGTTAGGATGGAGAGGGGACTGGAGGGAAATGATGTCAGAC  1042

seq1  TGGCAGAATTTAGTCAGAACTGGGGTGAAGAAAAATGGTCAATTAGAGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAATTTAGTCAGAACTGGGGTGAAGAAAAATGGTCAATTAGAGAT  1092

seq1  AAAAATCATGGTCTCAACTTCAGTGGTACTCTATGAATTGGAGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCATGGTCTCAACTTCAGTGGTACTCTATGAATTGGAGAATTC  1140

seq1: chr18_12908897_12909795
seq2: B6Ng01-037A01.g_70_973

seq1  GAATTCTGCCTGCCTCTGCCTCCGGAGTGCTAGGATTAAAGGCGTGCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGCCTCTGCCTCCGGAGTGCTAGGATTAAAGGCGTGCGCC  50

seq1  ACCACGCCTGGCCAGCCATTTATTTTCTAAGGAAATGAATAGTGTTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCCTGGCCAGCCATTTATTTTCTAAGGAAATGAATAGTGTTTAGG  100

seq1  TGGATGGATATACTCTGTTACAGGTTTATTAGCTATGCTAATTCTATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGATATACTCTGTTACAGGTTTATTAGCTATGCTAATTCTATGCT  150

seq1  AATTCAGAGGTTGCACATAGATCCTTGTGTATTGGTATTTGAATATTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGGTTGCACATAGATCCTTGTGTATTGGTATTTGAATATTCAC  200

seq1  CCTACCACATTGCTTTATGTAAAATATTCTGAGGAGTCCTTGCTGATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCACATTGCTTTATGTAAAATATTCTGAGGAGTCCTTGCTGATTAA  250

seq1  TTTACCTGATTGTTACTTTTAGTAGAGAAATGGGCAGAAGGAGTGACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGATTGTTACTTTTAGTAGAGAAATGGGCAGAAGGAGTGACAGT  300

seq1  GGAGAAGAAAGAATGTATCAAGGAACCCATAAAACCACCTCCAGTTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAAAGAATGTATCAAGGAACCCATAAAACCACCTCCAGTTCCCT  350

seq1  GCAAACCCACACATATGGAAAAATCCACAGACACAGAGGAGGACAATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCACACATATGGAAAAATCCACAGACACAGAGGAGGACAATGTA  400

seq1  GCTGGACCACTATTTAGCAACAAAACCACTCAGTTTCCATCAGTTCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACCACTATTTAGCAACAAAACCACTCAGTTTCCATCAGTTCATGC  450

seq1  TGAAGTACAGTCTGAGGAGACAAGTGAAGGAGCTCGGGGTCCCTCTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTACAGTCTGAGGAGACAAGTGAAGGAGCTCGGGGTCCCTCTGACA  500

seq1  AACCGACTACTCCTAAGACCGACTACACCCCACCCTCGTCACCACCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGACTACTCCTAAGACCGACTACACCCCACCCTCGTCACCACCTCCA  550

seq1  GCGCCTGTCTCTGCCGAGTACGCTTATGTCCCAGCTGACCCAGCTCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGTCTCTGCCGAGTACGCTTATGTCCCAGCTGACCCAGCTCAGTT  600

seq1  TGCCGCTCAGATGTTAGGTAATGTGCCATCTACTTATTCTGAAG-TTTTA  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCCGCTCAGATGTTAGGTAATGTGCCATCTACTTATTCTGAAGTTTTTA  650

seq1  ATGGTGGACGTGGCAACAAGTACGCCCGCTGTTCCCCAGGACGTACTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGACGTGGCAACAAGTACGCCCGCTGTTCCCCAGGACGTACTGAG  700

seq1  TGCAGAGTTTGCTGAAGAAGTCGTGCTGTCTGCCCCTCTGGTGTGCTC-T  748
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCAGAGTTTGCTGAAGAAGTCGTGCTGTCTGCCCCTCTGGTGTGCTCTT  750

seq1  GGAGAGACGGTAGAAGTGCAGG-TTGTGAGCAAAACATCTGCGCAGGTAG  797
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  GGAGAGAC-GTAGAAGTGCAGGTTTGTGAGCAAAACATCTGCGCAGGTAG  799

seq1  TTGTGGGTCCTGTG-TCTGAGGCTGAACCACCAAAG-GCTTCCTCAGCCC  845
      |||||||||||||| ||||| | ||||||||||||| |||||||| ||||
seq2  TTGTGGGTCCTGTGTTCTGATGTTGAACCACCAAAGTGCTTCCTCTGCCC  849

seq1  -CCTTGCAGGGTGAACAAGAACCTCCTGCTCATGAAGCTCCTGATACCCA  894
       ||||| ||||||||||||||| ||||||||  |||||||||| || |||
seq2  TCCTTGTAGGGTGAACAAGAACTTCCTGCTCTGGAAGCTCCTGTTAACCA  899

seq1  GGTTA  899
      |||||
seq2  GGTTA  904