BAC Information

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BAC

Clone NameB6Ng01-038M06
Chromosome18 (Build37)
Map Location 88,252,724 - 88,333,532
singlet/doubletdoublet
Overlap geneLOC100039961
Upstream geneLOC383318, Ppia-ps18_1039.1, LOC329008
Downstream geneLOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M06.bB6Ng01-038M06.g
ACCDH866227DH866228
length5931,118
definitionDH866227|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M06, 5' end.DH866228|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,252,724 - 88,253,316)(88,332,402 - 88,333,532)
sequence
gaattcatctcaaactcacttcttacctcatatttcctttctccctatat
tgcatgccctgatggagacatacagcttttattttcataacatagctttc
tttttttattagatattttctttatttacatttcaaatattatccccttt
cctagtttccccttggaaagccccctgtcccttccctcctccccgctgct
caccaacccacccactcttgcttcctggccttggcattcccctacattgg
gtgataggactaagggcctctcctcccattgatgatcaactagaccatcc
tttgctacatatgcagctagatccatgagttccatcatgtgttttctatg
gttagtggattagtccctgagagctctggaggtactggccagttcatatt
gttgttcctcctatggggcagcaaaccccttcagctctttgggttctttc
tctagctccttcattggggaccctgtgttctgtccaatggatgactgtga
gtatccacttctatatttgtcaggaactggcagaacctctcaggagactg
ctatatcaggctcctgtcagcaagctcttattggcctccacag
gaattcattcttgctgaattacttcaagtaattaggaaggggattgttgg
tctggccagaatccagtcacaaaggatgctgtttgtttttctgaacaaga
caggtggaaagaaaaagagtagagtgccctagaaaactttatttttttat
taaattattttatttgttcatgtcccaaatgatgccccctttcctggtca
cccctcaccaagttctttaacccagtacattatattcattacttggttgg
aagagggaatgtaaggaaaccttatacttatctcttcttccttacttctt
ttcctttttctctgtgaatgaatattttaaaatgtacatgattgtgcttt
tgtaaagttcctttttgagaaactttcctttctttataaagtaaaaacaa
atgggaagggtttaagtaaacctggtcaacccgcaagagtaaaaataatt
cttcctaaaattaggattctttctgccaacaaaattgctttcaccttata
ttaattattgttcactttatgatatacaacaaaaacaaacaaatgatgta
agtctgagctcaatgctatgttctttaatctaacactgtggatttgtagg
caggagaatcaggaggtcagagctatttggttagctagagcagttagtgc
ttcatgacagcctttagcaagacaaacacacaaacatgtgaaaaagaata
aataaatcaaagtaacgacagaaaaacaccacaaatcaatggtattgtga
ggtttatttcaaataatttttattaaaagataattttattttgttatttt
gttatttgggctacggtgcaccaatttttcctgaatactatgtttaaaat
tataaaataatcactgcacaaactgtcactagacagtttattaaatgtct
acaaacatagaggtacatatgtatattattttcattctatttattgaacc
aatgaaatattttaattcctatagatagtttaatgtcacaaaaaagctgc
ttgattttgatgagaaattttctgcatcaatttttgttccacaggttctg
agcatagtacctcagtgaccacaactagattgctgatgtatctaggatcc
agtgtgcagtaacgtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88252724_88253316
seq2: B6Ng01-038M06.b_47_639

seq1  GAATTCATCTCAAACTCACTTCTTACCTCATATTTCCTTTCTCCCTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAAACTCACTTCTTACCTCATATTTCCTTTCTCCCTATAT  50

seq1  TGCATGCCCTGATGGAGACATACAGCTTTTATTTTCATAACATAGCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCCCTGATGGAGACATACAGCTTTTATTTTCATAACATAGCTTTC  100

seq1  TTTTTTTATTAGATATTTTCTTTATTTACATTTCAAATATTATCCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTAGATATTTTCTTTATTTACATTTCAAATATTATCCCCTTT  150

seq1  CCTAGTTTCCCCTTGGAAAGCCCCCTGTCCCTTCCCTCCTCCCCGCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTTCCCCTTGGAAAGCCCCCTGTCCCTTCCCTCCTCCCCGCTGCT  200

seq1  CACCAACCCACCCACTCTTGCTTCCTGGCCTTGGCATTCCCCTACATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCCACCCACTCTTGCTTCCTGGCCTTGGCATTCCCCTACATTGG  250

seq1  GTGATAGGACTAAGGGCCTCTCCTCCCATTGATGATCAACTAGACCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGGACTAAGGGCCTCTCCTCCCATTGATGATCAACTAGACCATCC  300

seq1  TTTGCTACATATGCAGCTAGATCCATGAGTTCCATCATGTGTTTTCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTACATATGCAGCTAGATCCATGAGTTCCATCATGTGTTTTCTATG  350

seq1  GTTAGTGGATTAGTCCCTGAGAGCTCTGGAGGTACTGGCCAGTTCATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGGATTAGTCCCTGAGAGCTCTGGAGGTACTGGCCAGTTCATATT  400

seq1  GTTGTTCCTCCTATGGGGCAGCAAACCCCTTCAGCTCTTTGGGTTCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCCTCCTATGGGGCAGCAAACCCCTTCAGCTCTTTGGGTTCTTTC  450

seq1  TCTAGCTCCTTCATTGGGGACCCTGTGTTCTGTCCAATGGATGACTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCCTTCATTGGGGACCCTGTGTTCTGTCCAATGGATGACTGTGA  500

seq1  GTATCCACTTCTATATTTGTCAGGAACTGGCAGAACCTCTCAGGAGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCACTTCTATATTTGTCAGGAACTGGCAGAACCTCTCAGGAGACTG  550

seq1  CTATATCAGGCTCCTGTCAGCAAGCTCTTATTGGCCTCCACAG  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAGGCTCCTGTCAGCAAGCTCTTATTGGCCTCCACAG  593

seq1: chr18_88332402_88333532
seq2: B6Ng01-038M06.g_68_1185 (reverse)

seq1  TGGACGTTACTGCACAACATGGATACCTTAGATACATACAGCAATTCTAG  50
      ||||||||||||||||   |||||  | ||||||||| |||||| |||||
seq2  TGGACGTTACTGCACA--CTGGAT--CCTAGATACAT-CAGCAA-TCTAG  44

seq1  TGTGTGGTTCACTGA-GTACTAATGCTCAGAACCTGTGGAACAAAAATTG  99
      | ||||| ||||||| ||||| ||||||||||||||||||||||||||||
seq2  T-TGTGG-TCACTGAGGTACT-ATGCTCAGAACCTGTGGAACAAAAATTG  91

seq1  ATGCAGAAAAATTTCTCATCAAAATCAAGCAGCTTTTTTGTGACATTTAA  149
      |||||| ||||||||||||||||||||||||||||||||||||||||  |
seq2  ATGCAG-AAAATTTCTCATCAAAATCAAGCAGCTTTTTTGTGACATT--A  138

seq1  AACTATCTATAGGAATTTAAAATATTTTCATTGGTTCAAATAAATAGAAT  199
      ||||||||||||||| |||||||| |||||||||||| ||||||||||||
seq2  AACTATCTATAGGAA-TTAAAATA-TTTCATTGGTTC-AATAAATAGAAT  185

seq1  GAAAATAATATACATATGTACCTCTATGTTTGTAGACATTTAATAAACTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATATACATATGTACCTCTATGTTTGTAGACATTTAATAAACTG  235

seq1  TCTAGTGACAGTTTGTGCAGTGATTATTTTATAATTTTAAACATAGTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGACAGTTTGTGCAGTGATTATTTTATAATTTTAAACATAGTATT  285

seq1  CAGG-AAAATTGGTGCACCGTAGCCCAAATAACAAAATAACAAAATAAAA  348
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAATTGGTGCACCGTAGCCCAAATAACAAAATAACAAAATAAAA  335

seq1  TTATCTTTTAATAAAAATTATTTGAAATAAACCTCACAATACCATTGATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTAATAAAAATTATTTGAAATAAACCTCACAATACCATTGATT  385

seq1  TGTGGTGTTTTTCTGTCGTTACTTTGATTTATTTATTCTTTTTCACATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTTTTTCTGTCGTTACTTTGATTTATTTATTCTTTTTCACATGT  435

seq1  TTGTGTGTTTGTCTTGCTAAAGGCTGTCATGAAGCACTAACTGCTCTAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTTTGTCTTGCTAAAGGCTGTCATGAAGCACTAACTGCTCTAGC  485

seq1  TAACCAAATAGCTCTGACCTCCTGATTCTCCTGCCTACAAATCCACAGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAATAGCTCTGACCTCCTGATTCTCCTGCCTACAAATCCACAGTG  535

seq1  TTAGATTAAAGAACATAGCATTGAGCTCAGACTTACATCATTTGTTTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTAAAGAACATAGCATTGAGCTCAGACTTACATCATTTGTTTGTT  585

seq1  TTTGTTGTATATCATAAAGTGAACAATAATTAATATAAGGTGAAAGCAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTATATCATAAAGTGAACAATAATTAATATAAGGTGAAAGCAAT  635

seq1  TTTGTTGGCAGAAAGAATCCTAATTTTAGGAAGAATTATTTTTACTCTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGCAGAAAGAATCCTAATTTTAGGAAGAATTATTTTTACTCTTG  685

seq1  CGGGTTGACCAGGTTTACTTAAACCCTTCCCATTTGTTTTTACTTTATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTGACCAGGTTTACTTAAACCCTTCCCATTTGTTTTTACTTTATAA  735

seq1  AGAAAGGAAAGTTTCTCAAAAAGGAACTTTACAAAAGCACAATCATGTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAAGTTTCTCAAAAAGGAACTTTACAAAAGCACAATCATGTAC  785

seq1  ATTTTAAAATATTCATTCACAGAGAAAAAGGAAAAGAAGTAAGGAAGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATATTCATTCACAGAGAAAAAGGAAAAGAAGTAAGGAAGAAG  835

seq1  AGATAAGTATAAGGTTTCCTTACATTCCCTCTTCCAACCAAGTAATGAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTATAAGGTTTCCTTACATTCCCTCTTCCAACCAAGTAATGAAT  885

seq1  ATAATGTACTGGGTTAAAGAACTTGGTGAGGGGTGACCAGGAAAGGGGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTACTGGGTTAAAGAACTTGGTGAGGGGTGACCAGGAAAGGGGGC  935

seq1  ATCATTTGGGACATGAACAAATAAAATAATTTAATAAAAAAATAAAGTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGGGACATGAACAAATAAAATAATTTAATAAAAAAATAAAGTTT  985

seq1  TCTAGGGCACTCTACTCTTTTTCTTTCCACCTGTCTTGTTCAGAAAAACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGCACTCTACTCTTTTTCTTTCCACCTGTCTTGTTCAGAAAAACA  1035

seq1  AACAGCATCCTTTGTGACTGGATTCTGGCCAGACCAACAATCCCCTTCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATCCTTTGTGACTGGATTCTGGCCAGACCAACAATCCCCTTCCT  1085

seq1  AATTACTTGAAGTAATTCAGCAAGAATGAATTC  1131
      |||||||||||||||||||||||||||||||||
seq2  AATTACTTGAAGTAATTCAGCAAGAATGAATTC  1118