BAC Information

Click to search

BAC

Clone NameB6Ng01-038M07
Chromosome18 (Build37)
Map Location 69,729,296 - 69,888,837
singlet/doubletdoublet
Overlap geneTcf4
Upstream geneLOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M07.bB6Ng01-038M07.g
ACCDH866229DH866230
length1,117524
definitionDH866229|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M07, 5' end.DH866230|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,887,710 - 69,888,837)(69,729,296 - 69,729,825)
sequence
gaattctctattatcctgctgtgtggagtgctggtgggctgcaactgagc
acttatgtcttatcaggctgccattacttttttttttttcaaaaaaaatt
tttttttaaagctagctgtagaagttatagatttcatgtccgaaaaacca
cacttcttagaaagttatgtatctggccttcttacccagatcctataaac
ccatccctgttcatgcaacttagagacatgtcggggatatgaaccaatta
tattgctgaccaaagaagacacttcaaaatggagagacattatcctactt
cacagcgtcgaagttaaaggaattggcccgaactatcagctacaacatcc
ctgatggctctgtttaagagacgtgctacatctgggatttgctaacttga
gtcagcgaagactttctatttcctcccaatgatttcctgaagtcattttt
cacaaggttccaactttctaagatgttgtgccataaatgcctttgctgtc
agcaggcagggagcctgccaaagttggccttcccgaaacattccattggt
tctctccctgctccggggagctaaggatgatggaccattactgtcctttg
gggagatacaagttcactttgatcaggtacaagtgaagactgtagtcagt
ttcagggcccttgagcaacatgtagttagacaaactgttcacatactgtt
actgagaatggaaacgcaggaagtgaggaatggtgacgagtcaatacacg
ccaaatagaaggcagagctgttaggatgatccacagaggtccagagagct
gccccgatagattggcccccaggatacagtaaccaaatcttcactaggct
gccttgcaccgtgctgtcttgatgtgttttctcttgtccactgtctcatt
tgtactagccaagttgtcattactttgtttttcttctcacattacattct
tttttagttagcattaaaagtcatggctttctgccgggcagtagtggcac
acgcctttatccagcacttgggaggcagaggcaggtgaatttctgagtcg
aaacagcctgtctacggatgagttcaagaagaactagctactgtcttagt
caggtttctattcctgc
actaatccactcttaagctttaagttcagtaatgtgtttttctggacacc
aatctcatcctctctattgcttttagaggctaagtaaaacgttaagtttt
gtatgagcttctggggtatgaagtaaatacaggaggactgtatactcttt
gcattggagactcagtatttcagaaagcacagacaggaaatatgcaccat
ttggcatttggcattccaggcttccagaagtttccttaaaagatttcagt
attgttgggaatttcagaataatctttcctgcaactttggaacacacttt
ctccccttcttctagagactgccggtgtgcatattttaaatctgaagagg
aaaaagaaagataaaagtcggcaggacaaaaatgaagacttgccacagag
ggcagattcctgtatctgtctactcagagcttgtctttgcaaattaaaaa
gttatagacttcagaatctccaaggaagccagaccatttcattcctcctg
ccagaagagagtatgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69887710_69888837
seq2: B6Ng01-038M07.b_48_1164 (reverse)

seq1  GCAGGAATAGAAACCCTGACTAAGACAGTAGCTATGTCTCTCCTGGAACT  50
      ||||||||||||| |||||||||||||||||||| || ||| || |||||
seq2  GCAGGAATAGAAA-CCTGACTAAGACAGTAGCTA-GT-TCTTCTTGAACT  47

seq1  CATTCTGTAGACCAGGCTGGTCTCGGACTCAGAAATCCACCTGCCTCTGC  100
      || || ||||| |||||| || || ||||||||||| |||||||||||||
seq2  CA-TCCGTAGA-CAGGCT-GTTTC-GACTCAGAAATTCACCTGCCTCTGC  93

seq1  CTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACTACTGCCCGGCAGAAAG  150
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTGCTGG--ATAAAGGCGTGTGCCACTACTGCCCGGCAGAAAG  141

seq1  CCATGACTTTTAATGCTAACTTAAAAAAAGAATGTAATGTGAGAAGAAAA  200
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  CCATGACTTTTAATGCTAACT--AAAAAAGAATGTAATGTGAGAAGAAAA  189

seq1  ACAAAGTAATGACAACTTGGCTAGTACAAATGAGACAGTGGACAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAATGACAACTTGGCTAGTACAAATGAGACAGTGGACAAGAGAA  239

seq1  AACACATCAAGACAGCACGGTGCAAGGCAGCCTAGTGAAGATTTGGTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCAAGACAGCACGGTGCAAGGCAGCCTAGTGAAGATTTGGTTAC  289

seq1  TGTATCCTGGGGGCCAATCTATCGGGGCAGCTCTCTGGACCTCTGTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTGGGGGCCAATCTATCGGGGCAGCTCTCTGGACCTCTGTGGAT  339

seq1  CATCCTAACAGCTCTGCCTTCTATTTGGCGTGTATTGACTCGTCACCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAACAGCTCTGCCTTCTATTTGGCGTGTATTGACTCGTCACCATT  389

seq1  CCTCACTTCCTGCGTTTCCATTCTCAGTAACAGTATGTGAACAGTTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTCCTGCGTTTCCATTCTCAGTAACAGTATGTGAACAGTTTGTC  439

seq1  TAACTACATGTTGCTCAAGGGCCCTGAAACTGACTACAGTCTTCACTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACATGTTGCTCAAGGGCCCTGAAACTGACTACAGTCTTCACTTGT  489

seq1  ACCTGATCAAAGTGAACTTGTATCTCCCCAAAGGACAGTAATGGTCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATCAAAGTGAACTTGTATCTCCCCAAAGGACAGTAATGGTCCATC  539

seq1  ATCCTTAGCTCCCCGGAGCAGGGAGAGAACCAATGGAATGTTTCGGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGCTCCCCGGAGCAGGGAGAGAACCAATGGAATGTTTCGGGAAG  589

seq1  GCCAACTTTGGCAGGCTCCCTGCCTGCTGACAGCAAAGGCATTTATGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTTTGGCAGGCTCCCTGCCTGCTGACAGCAAAGGCATTTATGGCA  639

seq1  CAACATCTTAGAAAGTTGGAACCTTGTGAAAAATGACTTCAGGAAATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTTAGAAAGTTGGAACCTTGTGAAAAATGACTTCAGGAAATCAT  689

seq1  TGGGAGGAAATAGAAAGTCTTCGCTGACTCAAGTTAGCAAATCCCAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAAATAGAAAGTCTTCGCTGACTCAAGTTAGCAAATCCCAGATG  739

seq1  TAGCACGTCTCTTAAACAGAGCCATCAGGGATGTTGTAGCTGATAGTTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACGTCTCTTAAACAGAGCCATCAGGGATGTTGTAGCTGATAGTTCG  789

seq1  GGCCAATTCCTTTAACTTCGACGCTGTGAAGTAGGATAATGTCTCTCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATTCCTTTAACTTCGACGCTGTGAAGTAGGATAATGTCTCTCCAT  839

seq1  TTTGAAGTGTCTTCTTTGGTCAGCAATATAATTGGTTCATATCCCCGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTGTCTTCTTTGGTCAGCAATATAATTGGTTCATATCCCCGACA  889

seq1  TGTCTCTAAGTTGCATGAACAGGGATGGGTTTATAGGATCTGGGTAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAAGTTGCATGAACAGGGATGGGTTTATAGGATCTGGGTAAGAA  939

seq1  GGCCAGATACATAACTTTCTAAGAAGTGTGGTTTTTCGGACATGAAATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATACATAACTTTCTAAGAAGTGTGGTTTTTCGGACATGAAATCT  989

seq1  ATAACTTCTACAGCTAGCTTTAAAAAAAAATTTTTTTTGAAAAAAAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCTACAGCTAGCTTTAAAAAAAAATTTTTTTTGAAAAAAAAAAA  1039

seq1  AGTAATGGCAGCCTGATAAGACATAAGTGCTCAGTTGCAGCCCACCAGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGGCAGCCTGATAAGACATAAGTGCTCAGTTGCAGCCCACCAGCA  1089

seq1  CTCCACACAGCAGGATAATAGAGAATTC  1128
      ||||||||||||||||||||||||||||
seq2  CTCCACACAGCAGGATAATAGAGAATTC  1117

seq1: chr18_69729296_69729825
seq2: B6Ng01-038M07.g_66_595

seq1  GAATTCACTAATCCACTCTTAAGCTTTAAGTTCAGTAATGTGTTTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATCCACTCTTAAGCTTTAAGTTCAGTAATGTGTTTTTCTG  50

seq1  GACACCAATCTCATCCTCTCTATTGCTTTTAGAGGCTAAGTAAAACGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAATCTCATCCTCTCTATTGCTTTTAGAGGCTAAGTAAAACGTTA  100

seq1  AGTTTTGTATGAGCTTCTGGGGTATGAAGTAAATACAGGAGGACTGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTATGAGCTTCTGGGGTATGAAGTAAATACAGGAGGACTGTATA  150

seq1  CTCTTTGCATTGGAGACTCAGTATTTCAGAAAGCACAGACAGGAAATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCATTGGAGACTCAGTATTTCAGAAAGCACAGACAGGAAATATG  200

seq1  CACCATTTGGCATTTGGCATTCCAGGCTTCCAGAAGTTTCCTTAAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTGGCATTTGGCATTCCAGGCTTCCAGAAGTTTCCTTAAAAGAT  250

seq1  TTCAGTATTGTTGGGAATTTCAGAATAATCTTTCCTGCAACTTTGGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATTGTTGGGAATTTCAGAATAATCTTTCCTGCAACTTTGGAACA  300

seq1  CACTTTCTCCCCTTCTTCTAGAGACTGCCGGTGTGCATATTTTAAATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTCCCCTTCTTCTAGAGACTGCCGGTGTGCATATTTTAAATCTG  350

seq1  AAGAGGAAAAAGAAAGATAAAAGTCGGCAGGACAAAAATGAAGACTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAAAGAAAGATAAAAGTCGGCAGGACAAAAATGAAGACTTGCC  400

seq1  ACAGAGGGCAGATTCCTGTATCTGTCTACTCAGAGCTTGTCTTTGCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGCAGATTCCTGTATCTGTCTACTCAGAGCTTGTCTTTGCAAAT  450

seq1  TAAAAAGTTATAGACTTCAGAATCTCCAAGGAAGCCAGACCATTTCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTTATAGACTTCAGAATCTCCAAGGAAGCCAGACCATTTCATTC  500

seq1  CTCCTGCCAGAAGAGAGTATGTGTGTGTGT  530
      ||||||||||||||||||||||||||||||
seq2  CTCCTGCCAGAAGAGAGTATGTGTGTGTGT  530