BAC Information

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BAC

Clone NameB6Ng01-039D09
Chromosome18 (Build37)
Map Location 84,681,259 - 84,870,424
singlet/doubletdoublet
Overlap geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711
Upstream geneTshz1, Zadh2, LOC669856
Downstream geneLOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039D09.bB6Ng01-039D09.g
ACCDH866544DH866545
length618910
definitionDH866544|Mus musculus domesticus DNA, BAC clone: B6Ng01-039D09, 5' end.DH866545|Mus musculus domesticus DNA, BAC clone: B6Ng01-039D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,681,259 - 84,681,876)(84,869,811 - 84,870,424)
sequence
gaattcaatccatcattagcttttatttcctaagggcacactatgtacat
tcaataagaggtgagaaaaaggtaaacaaacaaaaaccatattggttttg
ctttttaaaaacggttccactatgcaatagtgtctgcgtttggtggctga
ttatgggatggacccctaggtggggcagtctctggatggtccatcctttc
attttagctacagactttgtctctgcaactcctcccatggatattttatt
ccgtattctagggaaaaatgaagtatccacgcgttggtcttccttcttca
ttttcttgtgttttcgaagttgtatcttgggtattctattctaggtttct
aggctaatatctacttatcagtgagtgcatatcaagtgacttcttttgtg
attgggttacctcactcaggatgatatcctccagatacatccatttgccc
aagaatttcataaattcattgtttttaatagctgagtagtactccattgt
gtaaatgtaccacattttctgtatccattcctctgttgagggacatctgg
gttctttccagattctggctattataaatagagctgctatgcacatagtg
gagcatgtgtccttatta
gaattcaaactgaggcagggtttcaaaggaatgttatctgtgttatagct
aatttttgagaacagctaatcttgctccagcagctatggtcctcatgacc
tcttagtcttctcagatggggaaggggctgggtggtattgaactattgaa
cttgcttacattggcaggaaaagggaacattcctcaagcagcagggggaa
gggaaaagcatctgcaaacagctttggtgcacattagccaagcggaaaac
tatatttcttcaccaccaagcctggctcttttgtgagttctgtgcctcag
actcaggcccttgtgcctgtatggcaagctctttattgtcagccatcttc
ccagcgccctccctcccacccttcctccccagacccttcaccccggcatc
agctacattcccaacatcccattcatttaccatgttatatacatttgctt
caatccatctccaagtattttctaaattccctcatgaccttgaaaatttt
tgcccgttgtttataaaagagtgtgttctttcatttctacgtgtttgtgg
ctttcccaaacttccttcatttatttattttaatttgtggtcagaagaga
atctttgtatgattttttttacctcattatggtttgctctgtggctccag
atattgtatatgctatagaacagactttgaaaaaaaatgaatattatgct
gttgctgaagtgttctgggtatgactggattataggaatgttcaagagtc
tcttttcttatccatcttctgcccggtttgttctctcctttgatgagagt
ggaccattaaaggtctctgttactattgaattgcctcttttccctataat
tctgacagcctctgctgtgtgtaatggaatctctgtatactgatattggc
ttctacactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_84681259_84681876
seq2: B6Ng01-039D09.b_43_660

seq1  GAATTCAATCCATCATTAGCTTTTATTTCCTAAGGGCACACTATGTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCATCATTAGCTTTTATTTCCTAAGGGCACACTATGTACAT  50

seq1  TCAATAAGAGGTGAGAAAAAGGTAAACAAACAAAAACCATATTGGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGAGGTGAGAAAAAGGTAAACAAACAAAAACCATATTGGTTTTG  100

seq1  CTTTTTAAAAACGGTTCCACTATGCAATAGTGTCTGCGTTTGGTGGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAAACGGTTCCACTATGCAATAGTGTCTGCGTTTGGTGGCTGA  150

seq1  TTATGGGATGGACCCCTAGGTGGGGCAGTCTCTGGATGGTCCATCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGATGGACCCCTAGGTGGGGCAGTCTCTGGATGGTCCATCCTTTC  200

seq1  ATTTTAGCTACAGACTTTGTCTCTGCAACTCCTCCCATGGATATTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGCTACAGACTTTGTCTCTGCAACTCCTCCCATGGATATTTTATT  250

seq1  CCGTATTCTAGGGAAAAATGAAGTATCCACGCGTTGGTCTTCCTTCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATTCTAGGGAAAAATGAAGTATCCACGCGTTGGTCTTCCTTCTTCA  300

seq1  TTTTCTTGTGTTTTCGAAGTTGTATCTTGGGTATTCTATTCTAGGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTGTTTTCGAAGTTGTATCTTGGGTATTCTATTCTAGGTTTCT  350

seq1  AGGCTAATATCTACTTATCAGTGAGTGCATATCAAGTGACTTCTTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAATATCTACTTATCAGTGAGTGCATATCAAGTGACTTCTTTTGTG  400

seq1  ATTGGGTTACCTCACTCAGGATGATATCCTCCAGATACATCCATTTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTTACCTCACTCAGGATGATATCCTCCAGATACATCCATTTGCCC  450

seq1  AAGAATTTCATAAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTCATAAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTGT  500

seq1  GTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGG  550

seq1  GTTCTTTCCAGATTCTGGCTATTATAAATAGAGCTGCTATGCACATAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCCAGATTCTGGCTATTATAAATAGAGCTGCTATGCACATAGTG  600

seq1  GAGCATGTGTCCTTATTA  618
      ||||||||||||||||||
seq2  GAGCATGTGTCCTTATTA  618

seq1: chr18_84869811_84870424
seq2: B6Ng01-039D09.g_69_682 (reverse)

seq1  AATCATACAAAGATTCTCTTCTGACCACAAATTAAAATAAATAAATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATACAAAGATTCTCTTCTGACCACAAATTAAAATAAATAAATGAAG  50

seq1  GAAGTTTGGGAAAGCCACAAACACGTAGAAATGAAAGAACACACTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGGGAAAGCCACAAACACGTAGAAATGAAAGAACACACTCTTTT  100

seq1  ATAAACAACGGGCAAAAATTTTCAAGGTCATGAGGGAATTTAGAAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAACGGGCAAAAATTTTCAAGGTCATGAGGGAATTTAGAAAATAC  150

seq1  TTGGAGATGGATTGAAGCAAATGTATATAACATGGTAAATGAATGGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATGGATTGAAGCAAATGTATATAACATGGTAAATGAATGGGATG  200

seq1  TTGGGAATGTAGCTGATGCCGGGGTGAAGGGTCTGGGGAGGAAGGGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATGTAGCTGATGCCGGGGTGAAGGGTCTGGGGAGGAAGGGTGGG  250

seq1  AGGGAGGGCGCTGGGAAGATGGCTGACAATAAAGAGCTTGCCATACAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGCGCTGGGAAGATGGCTGACAATAAAGAGCTTGCCATACAGGC  300

seq1  ACAAGGGCCTGAGTCTGAGGCACAGAACTCACAAAAGAGCCAGGCTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCCTGAGTCTGAGGCACAGAACTCACAAAAGAGCCAGGCTTGGT  350

seq1  GGTGAAGAAATATAGTTTTCCGCTTGGCTAATGTGCACCAAAGCTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGAAATATAGTTTTCCGCTTGGCTAATGTGCACCAAAGCTGTTTG  400

seq1  CAGATGCTTTTCCCTTCCCCCTGCTGCTTGAGGAATGTTCCCTTTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTTTTCCCTTCCCCCTGCTGCTTGAGGAATGTTCCCTTTTCCTG  450

seq1  CCAATGTAAGCAAGTTCAATAGTTCAATACCACCCAGCCCCTTCCCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTAAGCAAGTTCAATAGTTCAATACCACCCAGCCCCTTCCCCATC  500

seq1  TGAGAAGACTAAGAGGTCATGAGGACCATAGCTGCTGGAGCAAGATTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGACTAAGAGGTCATGAGGACCATAGCTGCTGGAGCAAGATTAGC  550

seq1  TGTTCTCAAAAATTAGCTATAACACAGATAACATTCCTTTGAAACCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAAAAATTAGCTATAACACAGATAACATTCCTTTGAAACCCTGC  600

seq1  CTCAGTTTGAATTC  614
      ||||||||||||||
seq2  CTCAGTTTGAATTC  614