BAC Information

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BAC

Clone NameB6Ng01-039E22
Chromosome18 (Build37)
Map Location 70,001,330 - 70,099,110
singlet/doubletdoublet
Overlap geneCcdc68
Upstream geneLOC100043380, EG225681, Tcf4
Downstream geneRab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039E22.bB6Ng01-039E22.g
ACCDH866611DH866612
length1,1681,096
definitionDH866611|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E22, 5' end.DH866612|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,001,330 - 70,002,508)(70,098,010 - 70,099,110)
sequence
gaattccaagcttctcattctagggaaatggacaccgagttgtaaatagc
atattacctttatttaaagagcctattaatatttcttagcgtttcagccg
attttggaaaaattatgaggcaaagacaggaaaagctctataaacacctc
aggactcaagacgtgcttataatttgggaccgatgatttatttagttctg
cgatcaagatagatattataatatggtgcaaattagaatgaagatactaa
ataatttacgctaatgctctcagttataaagataactgcctcactttgca
actgatataaattaagggaatatatttaaatgtatattttaatcaatcaa
gaaggctcgtctgccagccggtgttagatgctaatgcacgcgctcaagga
aacggtctgtttattaactaattaaatgccagctgactgagctgctgaat
tcatgtaaggggtggtactgttctggccattgggtacacttcacggtcaa
agtccagtgttcaattaacactgatagtttgctaccaactggtctaaggt
gccgtgtattcaaactgcaacatctatgatgacattaagagaacaggata
gaagaagttaagacggtgtaccaaaaaaacagcactagagagagagtcag
cttatcacctgagaccctgggcttcctagtctgctgcccagcacatagta
ggttgctcagtgagtacataatggaacggaatgaagttgaatgtgctttt
aagtgccgtgaagagtgggaagaaaggtgtcttttcaatctccggggact
tcacaaaaagcccacataaacacccacccgcatcaaaggctcctggagct
tttaagtacgggaggggtgcaggtagggacggtgaatgctcgccacagtg
aaagcagaaccaacaaattaggctacattagctgctcggggagcgcaagg
catgaaagagaaggcatttgaatggaaagctgagatgagccacgctggaa
acacaatcagacatttccttactaatcaaaatctatttgcttcagctttt
attattttttttctgtacaagcatcttttctcaaaatcatggcaagaaaa
ataaatcgaaggaaaagggtgccttcttgaatccaatgaggttgctttca
aactcacctctgaatctt
gaattctcccaaggtacatttttaatgaagtcatttgcagaggagtccct
ggcattagctagctggagctgtgcagagggacaaggtaaggaaagtgctg
caatcagcaggagacataaacatctagttgggagcacagcatcccatcca
ggaaagcaccaggggaggttatcaagcagcaggaaacccagcagagaatg
atgggggatgagctgagtgctgagaggtattctgaaccctcctggccatt
actcagttttactgagtggagaaaatcattccacttcacaagtatggaag
cacgggtttatactctaaagaaatgagaccagccctgtttaaacctaagc
tcttgactgtcctaagccaagagaggttcatccctttccatatgtcacat
gggtgtggaaacaaagcccaccaatccattctggtgcttatcataagaca
agcatgccacgggcatgatgactggcgccctcatacctgtctcacatact
cggtttcttcaataatgtgagcagacgaagagtcacagaagacgtggccg
tcttctgtcttaccgcttgagggaacttctgtggtcactgttacagttgt
catggtgacttctggctttaggaaaacataaatcagctcagccaaacaac
ataaaggaggttcatcgtaactggagttttagtttcaaatgtctagtctc
ttagactacaaaatctcaagagcgggccgctgatgtattcatttcctgtt
ataacataccagaaatgcttaataaatgtctgtgaaactaaaaatatagt
aatagtcaaactgtgtagtgtgtatcctgcagaaactccataaaagatgt
ttttttaaaggatgttgtaatggaaaaaatgcaagaaacacaaatgcaca
gaaataggactggtaagtttattgctgctgtggaataatatttacagtgt
gtgtgtcacttaaagccatggtacagaatgaatacctaatatcgtacttt
cttatttttaaaattaggtaaagaatacgatgagaaaatttgttttttca
acttttacaaaggtaaatttcaaatcagctgactctaagtgagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70001330_70002508
seq2: B6Ng01-039E22.b_43_1210

seq1  GAATTCCAAGCTTCTCATTCTAGGGAAATGGACACCGAGTTGTAAATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTTCTCATTCTAGGGAAATGGACACCGAGTTGTAAATAGC  50

seq1  ATATTACCTTTATTTAAAGAGCCTATTAATATTTCTTAGCGTTTCAGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACCTTTATTTAAAGAGCCTATTAATATTTCTTAGCGTTTCAGCCG  100

seq1  ATTTTGGAAAAATTATGAGGCAAAGACAGGAAAAGCTCTATAAACACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAAAAATTATGAGGCAAAGACAGGAAAAGCTCTATAAACACCTC  150

seq1  AGGACTCAAGACGTGCTTATAATTTGGGACCGATGATTTATTTAGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCAAGACGTGCTTATAATTTGGGACCGATGATTTATTTAGTTCTG  200

seq1  CGATCAAGATAGATATTATAATATGGTGCAAATTAGAATGAAGATACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCAAGATAGATATTATAATATGGTGCAAATTAGAATGAAGATACTAA  250

seq1  ATAATTTACGCTAATGCTCTCAGTTATAAAGATAACTGCCTCACTTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTACGCTAATGCTCTCAGTTATAAAGATAACTGCCTCACTTTGCA  300

seq1  ACTGATATAAATTAAGGGAATATATTTAAATGTATATTTTAATCAATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATAAATTAAGGGAATATATTTAAATGTATATTTTAATCAATCAA  350

seq1  GAAGGCTCGTCTGCCAGCCGGTGTTAGATGCTAATGCACGCGCTCAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCGTCTGCCAGCCGGTGTTAGATGCTAATGCACGCGCTCAAGGA  400

seq1  AACGGTCTGTTTATTAACTAATTAAATGCCAGCTGACTGAGCTGCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTCTGTTTATTAACTAATTAAATGCCAGCTGACTGAGCTGCTGAAT  450

seq1  TCATGTAAGGGGTGGTACTGTTCTGGCCATTGGGTACACTTCACGGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAAGGGGTGGTACTGTTCTGGCCATTGGGTACACTTCACGGTCAA  500

seq1  AGTCCAGTGTTCAATTAACACTGATAGTTTGCTACCAACTGGTCTAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGTGTTCAATTAACACTGATAGTTTGCTACCAACTGGTCTAAGGT  550

seq1  GCCGTGTATTCAAACTGCAACATCTATGATGACATTAAGAGAACAGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGTATTCAAACTGCAACATCTATGATGACATTAAGAGAACAGGATA  600

seq1  GAAGAAGTTAAGACGGTGTACCAAAAAAACAGCACTAGAGAGAGAGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTTAAGACGGTGTACCAAAAAAACAGCACTAGAGAGAGAGTCAG  650

seq1  CTTATCACCTGAGACCCTGGGCTTCCTAGTCTGCTGCCCAGCACATAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCACCTGAGACCCTGGGCTTCCTAGTCTGCTGCCCAGCACATAGTA  700

seq1  GGTTGCTCAGTGAGTACATAATGGAACGGAATGAAGTTGAATGTGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTCAGTGAGTACATAATGGAACGGAATGAAGTTGAATGTGCTTTT  750

seq1  AAGTGCCGTGAAGAGTGGGAAGAAAGGTGTCTTTTCAATCTCCGGGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCGTGAAGAGTGGGAAGAAAGGTGTCTTTTCAATCTCCGGGGACT  800

seq1  TCACAAAAAGCCCACATAAACACCCACCCGCATCAAAGGCTCCTGGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAAGCCCACATAAACACCCACCCGCATCAAAGGCTCCTGGAGCT  850

seq1  TTTAAGTACGGGAGGGGTGCAGGTAGGGACGGTGAATGCTCGCCACAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTACGGGAGGGGTGCAGGTAGGGACGGTGAATGCTCGCCACAGTG  900

seq1  AAAGCAGAACCAACAAATTAGGCTACATTAGCTGCTCGGGGAGCGCAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAACCAACAAATTAGGCTACATTAGCTGCTCGGGGAGCGCAAGG  950

seq1  CATGAAAGAGAAGGCATTTGAATGGAAAGCTGAAGAATGAGCCACGCTGG  1000
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  CATGAAAGAGAAGGCATTTGAATGGAAAGCTGA--GATGAGCCACGCTGG  998

seq1  AAACACAATCAGGACCATTTCCTTACTAATCAAAATCTATTTGCTTCAGC  1050
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  AAACACAATCAG--ACATTTCCTTACTAATCAAAATCTATTTGCTTCAGC  1046

seq1  TTTTATTATTTTTTTTCTGTACAAGCATCTTTTCTCATACATCATGGGCA  1100
      ||||||||||||||||||||||||||||||||||||| | ||||| ||||
seq2  TTTTATTATTTTTTTTCTGTACAAGCATCTTTTCTCA-AAATCAT-GGCA  1094

seq1  TAGAAAATAAAATCAGACAGAAAAGGGGTGCCTCCTTGGATTCCCAATGA  1150
       ||||||  ||||| || || ||| |||||||| |||| ||  |||||||
seq2  -AGAAAAATAAATC-GA-AGGAAAAGGGTGCCTTCTTGAAT--CCAATGA  1139

seq1  -GTTGCTGTCAAACTCACCTCTGGGATCTT  1179
       |||||| |||||||||||||| | |||||
seq2  GGTTGCTTTCAAACTCACCTCT-GAATCTT  1168

seq1: chr18_70098010_70099110
seq2: B6Ng01-039E22.g_64_1159 (reverse)

seq1  GATCTCACTCTAGAGTCCAGGCTGATTTGAAATTTA-CTTTGTAAAAGTT  49
      ||||||||| |||||||   |||||||||||||||| |||||||||||||
seq2  GATCTCACT-TAGAGTC--AGCTGATTTGAAATTTACCTTTGTAAAAGTT  47

seq1  G-AGAGACATATTTCTCTTCATCGTATTCTTTACCTTATTTTTAAAAATA  98
      | | | ||| |||| || ||||||||||||||||| || |||||||||||
seq2  GAAAAAACAAATTT-TC-TCATCGTATTCTTTACC-TAATTTTAAAAATA  94

seq1  AGAAAGTACGATATTAGGTATTCATTCTGTACCATGGCTTTTAAGTGACA  148
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAAAGTACGATATTAGGTATTCATTCTGTACCATGGC-TTTAAGTGACA  143

seq1  CACACACTGTAAATATTATTCCACAGCAGCAATAAACTTACCAGTCCTAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTGTAAATATTATTCCACAGCAGCAATAAACTTACCAGTCCTAT  193

seq1  TTCTGTGCATTTGTGTTTCTTGCATTTTTTCCATTACAACATCCTTTAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCATTTGTGTTTCTTGCATTTTTTCCATTACAACATCCTTTAAA  243

seq1  AAAACATCTTTTATGGAGTTTCTGCAGGATACACACTACACAGTTTGACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCTTTTATGGAGTTTCTGCAGGATACACACTACACAGTTTGACT  293

seq1  ATTACTATATTTTTAGTTTCACAGACATTTATTAAGCATTTCTGGTATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATATTTTTAGTTTCACAGACATTTATTAAGCATTTCTGGTATGT  343

seq1  TATAACAGGAAATGAATACATCAGCGGCCCGCTCTTGAGATTTTGTAGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGGAAATGAATACATCAGCGGCCCGCTCTTGAGATTTTGTAGTC  393

seq1  TAAGAGACTAGACATTTGAAACTAAAACTCCAGTTACGATGAACCTCCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGACTAGACATTTGAAACTAAAACTCCAGTTACGATGAACCTCCTT  443

seq1  TATGTTGTTTGGCTGAGCTGATTTATGTTTTCCTAAAGCCAGAAGTCACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTTTGGCTGAGCTGATTTATGTTTTCCTAAAGCCAGAAGTCACC  493

seq1  ATGACAACTGTAACAGTGACCACAGAAGTTCCCTCAAGCGGTAAGACAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAACTGTAACAGTGACCACAGAAGTTCCCTCAAGCGGTAAGACAGA  543

seq1  AGACGGCCACGTCTTCTGTGACTCTTCGTCTGCTCACATTATTGAAGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGCCACGTCTTCTGTGACTCTTCGTCTGCTCACATTATTGAAGAAA  593

seq1  CCGAGTATGTGAGACAGGTATGAGGGCGCCAGTCATCATGCCCGTGGCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTATGTGAGACAGGTATGAGGGCGCCAGTCATCATGCCCGTGGCAT  643

seq1  GCTTGTCTTATGATAAGCACCAGAATGGATTGGTGGGCTTTGTTTCCACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTATGATAAGCACCAGAATGGATTGGTGGGCTTTGTTTCCACA  693

seq1  CCCATGTGACATATGGAAAGGGATGAACCTCTCTTGGCTTAGGACAGTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGACATATGGAAAGGGATGAACCTCTCTTGGCTTAGGACAGTCA  743

seq1  AGAGCTTAGGTTTAAACAGGGCTGGTCTCATTTCTTTAGAGTATAAACCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTAGGTTTAAACAGGGCTGGTCTCATTTCTTTAGAGTATAAACCC  793

seq1  GTGCTTCCATACTTGTGAAGTGGAATGATTTTCTCCACTCAGTAAAACTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCATACTTGTGAAGTGGAATGATTTTCTCCACTCAGTAAAACTG  843

seq1  AGTAATGGCCAGGAGGGTTCAGAATACCTCTCAGCACTCAGCTCATCCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGGCCAGGAGGGTTCAGAATACCTCTCAGCACTCAGCTCATCCCC  893

seq1  CATCATTCTCTGCTGGGTTTCCTGCTGCTTGATAACCTCCCCTGGTGCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCTCTGCTGGGTTTCCTGCTGCTTGATAACCTCCCCTGGTGCTT  943

seq1  TCCTGGATGGGATGCTGTGCTCCCAACTAGATGTTTATGTCTCCTGCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATGGGATGCTGTGCTCCCAACTAGATGTTTATGTCTCCTGCTGA  993

seq1  TTGCAGCACTTTCCTTACCTTGTCCCTCTGCACAGCTCCAGCTAGCTAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCACTTTCCTTACCTTGTCCCTCTGCACAGCTCCAGCTAGCTAAT  1043

seq1  GCCAGGGACTCCTCTGCAAATGACTTCATTAAAAATGTACCTTGGGAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGACTCCTCTGCAAATGACTTCATTAAAAATGTACCTTGGGAGAA  1093

seq1  TTC  1101
      |||
seq2  TTC  1096