BAC Information

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BAC

Clone NameB6Ng01-039J13
Chromosome18 (Build37)
Map Location 48,304,617 - 48,339,584
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
Downstream geneLOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039J13.bB6Ng01-039J13.g
ACCDH866824DH866825
length1,1701,119
definitionDH866824|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J13, 5' end.DH866825|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,338,409 - 48,339,584)(48,304,617 - 48,305,733)
sequence
gaattctcatttctaagtgctgtgcaattattattattattattattatt
attattattattattattattaattataacagagtttactgaacctgagt
tatattccagttgctaaagtcatcttcatggatcactctgaaacacagca
aaggcttaattctctacctacctctttcctggggtcgttggcttggtcac
caagttagcaatgaacacagtttctctgccttggaaactaacatagccaa
atctctatttgaatttaaaacttggaagcataattataaggtcatgattt
aggcatccaagattctggcatcctgttatcctcttcaaagtacattcagc
tctatggcccatagcatgtctcaggaaattgaggtgctttaaaatagcta
cttcaaaagtgaaatatcattattcaacaggaaggagttttttcttttat
ttatttatttatttatttatttaggtatttatttcggtattttcttcatt
tacatttccagtgctatcccaaaactccccttacgctcccccacccatcc
ccacttcttggccctggcgttcccctgtactgaggcatataacgtttgca
cgaccaatgggcctctgggcctctgggcctctctttccactgatggccga
ctaggccatcttctgacacatatgcagctagagacacggggcttttaaat
aacaaatttaggtggtagaagctggatggcaatcagatcccacagggtcc
tacataggtgattttattttattttgcttttttgttttattttaatgact
atatcatgagaaaattttactctttttttttttacttaaatgaccttctg
tgttttaaaagaattatataagaatatatatttttaaagagtcatttgtt
tattatatgtaagtacactgcagctgtctttagacactccagagaggttg
tcagatttcattatggatggttgtgagccactataagaatatgttattgt
cagagtgttgtttaacattgacaagttacaatacttttttatcatacttg
ttcacaacctttatggagttgtactaaggataggaattcttttggctaac
attgaattgaaaataataaatagttttgttcttaacagtaccttcgttta
acacaactcaacagtttgaa
gaattcactagttattcagtccatgcgtctggatgtttcagctgttcttt
attatatgtgaaaatctcaaagccatagactccaaagcaagtaaaggaat
aaaccagccagtgagagtgagggcaagttggcaaagagagtaagtaccct
tctttcatgtcctttttataggctactggcagatgtggcccagattaaat
gctttaattaagaaaaaagtccttttagggatttgctcaagtatttggga
attagttaattctagctgtagtcaagttgacaacgaagagtagtcatcac
agagataataaaatcttgaatgagtagggaggtggagaggatctagaaga
agttggggaaaggtatgaccaagacatattgtataaaatttttaaaaata
aaaattataaaaaataaaaatctaataaaatattttgaaacacacacaca
aacacacaagagacaagaaatacaatcatctatatatattgtttcataat
aaattcatcacataaataatttcagtaggtaatttggaatgttattcatt
tattgatctttaaaagagtcaaatacaggccgggcagtggtggtgcatgc
ctttaatcccagcactttggaggcagaggcaggcagatttctgagttcga
ggctggtgtggtctacaaagtgagttccagggctatacagagaaaccctg
tctcgaaaaacaaaaacacaaacaaaaacaaaaacaacaacaaaaaaacc
ccaccaccaccaccaccaacaaaccccaacccccccaaaaaagagtcaaa
tataaaacagttctttatgtttgaagcatgctgcatttgcatttctgaaa
aataaaaatatttctctctcactgttttcctaaagatttatttattttta
tttatgtgtttgattgtatgtgtatgctcatgtatgtacgtatgtgtatg
ctcatgtatatctgttgcacatggatgccagaagagggcatcaatatcat
ggaattgggagttatatatgggttgtgagtcactaatgtgggttctggta
aaaccttcttgtaaagacagccagtgcctctacctctgaaccatcctctt
tcattccatatcttctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48338409_48339584
seq2: B6Ng01-039J13.b_45_1214 (reverse)

seq1  TTCAAGACTGTT-AGGTGTGTTAAACGAAAGTTACTGTTTTAAGAACAAA  49
      ||||| |||||| || ||||||||||| ||| |||||  |||||||||||
seq2  TTCAA-ACTGTTGAGTTGTGTTAAACG-AAGGTACTG--TTAAGAACAAA  46

seq1  AC-ATTTATTTATTTTCAAATTCAATG-TAGCCAAAAGAATTCCTATCCT  97
      || ||||| |||||||| ||||||||| ||||||||||||||||||||||
seq2  ACTATTTA-TTATTTTC-AATTCAATGTTAGCCAAAAGAATTCCTATCCT  94

seq1  TAGTAACAACT-CATAAAGGTTTGTTGAACAAGTATGATAAAAAGTTATT  146
      |||| |||||| ||||||||||   |||||||||||||||||||  ||||
seq2  TAGT-ACAACTCCATAAAGGTT--GTGAACAAGTATGATAAAAAAGTATT  141

seq1  GTAACTTTGTCAATGTTAAACAACACTCTGACAATAACATATTCTTATAG  196
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAC-TTGTCAATGTTAAACAACACTCTGACAATAACATATTCTTATAG  190

seq1  TGGCTCACAACCATCCATAATGAAATCTGACAACCTCTTCTGGAGTGTCT  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGCTCACAACCATCCATAATGAAATCTGACAACCTC-TCTGGAGTGTCT  239

seq1  AAAGACAGCTGCAGTGTACTTACATATAATAAACAAATGACTCTTTAAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGCTGCAGTGTACTTACATATAATAAACAAATGACTCTTTAAAA  289

seq1  ATATATATTCTTATATAATTCTTTTAAAACACAGAAGGTCATTTAAGT-A  345
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATATATATTCTTATATAATTCTTTTAAAACACAGAAGGTCATTTAAGTAA  339

seq1  AAAAAAAAAGAGTAAAATTTTCTCATGATATAGTCATTAAAATAAAACAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAGTAAAATTTTCTCATGATATAGTCATTAAAATAAAACAA  389

seq1  AAAAGCAAAATAAAATAAAATCACCTATGTAGGACCCTGTGGGATCTGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAATAAAATAAAATCACCTATGTAGGACCCTGTGGGATCTGAT  439

seq1  TGCCATCCAGCTTCTACCACCTAAATTTGTTATTTAAAAGCCCCGTGTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCAGCTTCTACCACCTAAATTTGTTATTTAAAAGCCCCGTGTCT  489

seq1  CTAGCTGCATATGTGTCAGAAGATGGCCTAGTCGGCCATCAGTGGAAAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCATATGTGTCAGAAGATGGCCTAGTCGGCCATCAGTGGAAAGA  539

seq1  GAGGCCCAGAGGCCCAGAGGCCCATTGGTCGTGCAAACGTTATATGCCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCAGAGGCCCAGAGGCCCATTGGTCGTGCAAACGTTATATGCCTC  589

seq1  AGTACAGGGGAACGCCAGGGCCAAGAAGTGGGGATGGGTGGGGGAGCGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGGGAACGCCAGGGCCAAGAAGTGGGGATGGGTGGGGGAGCGTA  639

seq1  AGGGGAGTTTTGGGATAGCACTGGAAATGTAAATGAAGAAAATACCGAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTTTTGGGATAGCACTGGAAATGTAAATGAAGAAAATACCGAAA  689

seq1  TAAATACCTAAATAAATAAATAAATAAATAAATAAAAGAAAAAACTCCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCTAAATAAATAAATAAATAAATAAATAAAAGAAAAAACTCCTT  739

seq1  CCTGTTGAATAATGATATTTCACTTTTGAAGTAGCTATTTTAAAGCACCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGAATAATGATATTTCACTTTTGAAGTAGCTATTTTAAAGCACCT  789

seq1  CAATTTCCTGAGACATGCTATGGGCCATAGAGCTGAATGTACTTTGAAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCTGAGACATGCTATGGGCCATAGAGCTGAATGTACTTTGAAGA  839

seq1  GGATAACAGGATGCCAGAATCTTGGATGCCTAAATCATGACCTTATAATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACAGGATGCCAGAATCTTGGATGCCTAAATCATGACCTTATAATT  889

seq1  ATGCTTCCAAGTTTTAAATTCAAATAGAGATTTGGCTATGTTAGTTTCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCAAGTTTTAAATTCAAATAGAGATTTGGCTATGTTAGTTTCCA  939

seq1  AGGCAGAGAAACTGTGTTCATTGCTAACTTGGTGACCAAGCCAACGACCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGAAACTGTGTTCATTGCTAACTTGGTGACCAAGCCAACGACCC  989

seq1  CAGGAAAGAGGTAGGTAGAGAATTAAGCCTTTGCTGTGTTTCAGAGTGAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGAGGTAGGTAGAGAATTAAGCCTTTGCTGTGTTTCAGAGTGAT  1039

seq1  CCATGAAGATGACTTTAGCAACTGGAATATAACTCAGGTTCAGTAAACTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGATGACTTTAGCAACTGGAATATAACTCAGGTTCAGTAAACTC  1089

seq1  TGTTATAATTAATAATAATAATAATAATAATAATAATAATAATAATAATA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAATTAATAATAATAATAATAATAATAATAATAATAATAATAATA  1139

seq1  ATAATTGCACAGCACTTAGAAATGAGAATTC  1176
      |||||||||||||||||||||||||||||||
seq2  ATAATTGCACAGCACTTAGAAATGAGAATTC  1170

seq1: chr18_48304617_48305733
seq2: B6Ng01-039J13.g_65_1183

seq1  GAATTCACTAGTTATTCAGTCCATGCGTCTGGATGTTTCAGCTGTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGTTATTCAGTCCATGCGTCTGGATGTTTCAGCTGTTCTTT  50

seq1  ATTATATGTGAAAATCTCAAAGCCATAGACTCCAAAGCAAGTAAAGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGTGAAAATCTCAAAGCCATAGACTCCAAAGCAAGTAAAGGAAT  100

seq1  AAACCAGCCAGTGAGAGTGAGGGCAAGTTGGCAAAGAGAGTAAGTACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCCAGTGAGAGTGAGGGCAAGTTGGCAAAGAGAGTAAGTACCCT  150

seq1  TCTTTCATGTCCTTTTTATAGGCTACTGGCAGATGTGGCCCAGATTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATGTCCTTTTTATAGGCTACTGGCAGATGTGGCCCAGATTAAAT  200

seq1  GCTTTAATTAAGAAAAAAGTCCTTTTAGGGATTTGCTCAAGTATTTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATTAAGAAAAAAGTCCTTTTAGGGATTTGCTCAAGTATTTGGGA  250

seq1  ATTAGTTAATTCTAGCTGTAGTCAAGTTGACAACGAAGAGTAGTCATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTAATTCTAGCTGTAGTCAAGTTGACAACGAAGAGTAGTCATCAC  300

seq1  AGAGATAATAAAATCTTGAATGAGTAGGGAGGTGGAGAGGATCTAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAATAAAATCTTGAATGAGTAGGGAGGTGGAGAGGATCTAGAAGA  350

seq1  AGTTGGGGAAAGGTATGACCAAGACATATTGTATAAAATTTTTAAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGAAAGGTATGACCAAGACATATTGTATAAAATTTTTAAAAATA  400

seq1  AAAATTATAAAAAATAAAAATCTAATAAAATATTTTGAAACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAAAAAATAAAAATCTAATAAAATATTTTGAAACACACACACA  450

seq1  AACACACAAGAGACAAGAAATACAATCATCTATATATATTGTTTCATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAAGAGACAAGAAATACAATCATCTATATATATTGTTTCATAAT  500

seq1  AAATTCATCACATAAATAATTTCAGTAGGTAATTTGGAATGTTATTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATCACATAAATAATTTCAGTAGGTAATTTGGAATGTTATTCATT  550

seq1  TATTGATCTTTAAAAGAGTCAAATACAGGCCGGGCAGTGGTGGTGCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCTTTAAAAGAGTCAAATACAGGCCGGGCAGTGGTGGTGCATGC  600

seq1  CTTTAATCCCAGCACTTTGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTTGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA  650

seq1  GGCTGGTGTGGTCTACAAAGTGAGTTCCAGGGCTATACAGAGAAACCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGTGGTCTACAAAGTGAGTTCCAGGGCTATACAGAGAAACCCTG  700

seq1  TCTCGAAAAACAAAAACACAAACAAAAACAAAAACAACAACAAAAAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAAAAACAAAAACACAAACAAAAACAAAAACAACAACAAAAAAACC  750

seq1  CCACCACCACCACCACCAACAAACCCCAACCCCCCCAAAAAAGAGTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCACCACCACCAACAAACCCCAACCCCCCCAAAAAAGAGTCAAA  800

seq1  TATAAAACAGTTC-TTATGTTTGAAGCATGCTGCATTTGCATTTCTGAAA  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATAAAACAGTTCTTTATGTTTGAAGCATGCTGCATTTGCATTTCTGAAA  850

seq1  AATAAAAATATTTCTCTCTCACTGTTTTCCTAAAGATTTATTTATTTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATATTTCTCTCTCACTGTTTTCCTAAAGATTTATTTATTTTTA  900

seq1  TTTTATGTGTTTGATTGTATGTGTATGCTCATGTATGTACGTATGTGTAT  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTATGTGTTTGATTGTATGTGTATGCTCATGTATGTACGTATGTGTAT  949

seq1  GCTCATGTATATCTGTTGCACATGGATGCCAGAAGAGGGCATCAAATATC  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTCATGTATATCTGTTGCACATGGATGCCAGAAGAGGGCATC-AATATC  998

seq1  ATGGAATTGGGAGTTATATAT-GGTTGTGAGTCACT-ATGTGGGTTCTGG  1047
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  ATGGAATTGGGAGTTATATATGGGTTGTGAGTCACTAATGTGGGTTCTGG  1048

seq1  TAAAAACCCTC-TGTAAAGACAGCAAGTGCTCTTAACTTCTGAACCAT-C  1095
      | |||||| || |||||||||||| ||||| ||  || |||||||||| |
seq2  T-AAAACCTTCTTGTAAAGACAGCCAGTGC-CTCTACCTCTGAACCATCC  1096

seq1  TCTTCAATCCCATATC-TCTCAC  1117
      ||||  || ||||||| ||||||
seq2  TCTTTCATTCCATATCTTCTCAC  1119