BAC Information

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BAC

Clone NameB6Ng01-039J16
Chromosome18 (Build37)
Map Location 38,585,883 - 38,669,429
singlet/doubletdoublet
Overlap geneNdfip1
Upstream genePcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839
Downstream geneSpry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26, Nr3c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039J16.bB6Ng01-039J16.g
ACCDH866830DH866831
length1,125975
definitionDH866830|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J16, 5' end.DH866831|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,668,299 - 38,669,429)(38,585,883 - 38,586,858)
sequence
gaattcccagctgtgaagagacctgggctcaagacacaactaagtagtta
aagttgttctgcttcttttttttttccctccatgaaaacaatatgcccga
gccacttgctgatccagcagcgatgagagatagcacagacctggactaaa
cctacagtctgcagccaagatctaagaggccagcctagctccttggagcc
cagttggccagacagttcagcatcatatgctacatacatttagtcatcgt
ctttctttattttcctttcatttcaaacgtggtctgtagcctgcaagagt
ctggctctcttcaacgtgtaaggtcggcaggtccacagaatgtctttctg
tttggctctctgattagattctggctgtgcatcattcaaaagcatctcag
gaaagcggtgctgtttttcacggcatctgatcattggcgtgtgcttctat
ttgcccctttgcgattgaggttcactctgatcacctggttagtgtcaggt
ccctcacagtccactgtaaagttactcatttactcttgacatttattggg
catatggggagaggaacaggaacttgaaaccatataaatatttatttata
ttagcgcagttatgattttttatacaaaatgtactattatacacaaactg
attatatgtgtatgtgtgtacatctgagaacacgtatgtgcaatcgcata
tatacaatgagagttctgcagaggccaaaggggcatcagatcccctaatt
gcagatggttgtctgctgcctagtgtgggtcctgggaattgaacctctat
tcaagcaacaggttatagaccattaggttgaaggcatggctctgtggtag
agaatttgcctgctttgtgtgaaataagctgagttcgatccccagctttg
cgaagccaaaggaagtattaatggcattgcttattttgatactcaaattg
tcacagctttggccagtgacagtcttttggtggcttcaatgttggcatta
acctgtttccttaattattaatttatttattttatcacatccgtgttctc
ctgaaccaataacaatttccctggtccttttgtacgtcatatgtcaattt
aagcaactggcattctcctgggcat
gaattctctatgtagaccagtctggccttgaactcaagagatttgccttt
tgcctgggattaaagtcatacactatgcttggcttcatctaaatagattt
ttaatattcatatatattaagatccattttgtgttgtaaaggtctggtct
ataggttttacacatccatgtctctttgaaatatatatgtatgtatgtat
gtatgtatgtatacactttagtatctagttttgccttgggccttatctaa
aggggataactgaagaaaatgtaaagattactgagatattgaattgtagt
agtcctacgtctgtcacgaagtagcaatatgatggtaagaacattaacgt
ctttctggactgttttataaaggaagctgaactcatttcattttgagagt
ttcagctttatagttgattttgtgtgtatgtgtgtgtgtttgtagaaagt
agaaactagtagctttgatccagagagatagtgttacattattttagtaa
attttgttacacacacacacacacacacacacacacacacacacacactt
ccccatgccaaatcaaacccatgaccttgttgcctataaggcagatactc
caccactgagttaaattcccagccctgactaatactactgaagtatacat
agataagtttatggtgaaacattacaaattggtacatattttcagatata
gaaaatactttctttttttttaagtccttaaaaatagatagtccccttag
ttgtctagtttgtcagtttatgaattaaaaataattctgtgtatctgtgt
gctatctgtgtgtgggtacccaatgagaacaggagagtattggatccctg
gagctggatacaggtgctggaaactgagcaggaagtcacttaaccacaga
accatctctccaacttctaaaagcatcttgttgttgtggtttaatcagct
actggtgtgtgtgtgggtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38668299_38669429
seq2: B6Ng01-039J16.b_42_1166 (reverse)

seq1  ATGCCCAGGAGAAATGGCCAGTTGCTGTAATATGACATATGACGTACAAA  50
      |||||||||||||   |||||||||| |||  ||||||||||||||||||
seq2  ATGCCCAGGAGAA--TGCCAGTTGCT-TAAATTGACATATGACGTACAAA  47

seq1  AGGACCAGGGGAAATTG-TATTGTGTCA-GAGAACACGGATGTGATAAAA  98
      ||||||| ||||||||| |||||  ||| ||||||||||||||||| |||
seq2  AGGACCA-GGGAAATTGTTATTGGTTCAGGAGAACACGGATGTGAT-AAA  95

seq1  ATAAATAAATAAATAAATAAAGGAAACAGGTTAATGCCAACATTGAAGCC  148
      |||||||||| ||| ||| |||||||||||||||||||||||||||||||
seq2  ATAAATAAATTAAT-AATTAAGGAAACAGGTTAATGCCAACATTGAAGCC  144

seq1  ACCAAAAGACTGTCCACTGGCCAAAGCTGTGACAATTTGAGTATCAAAAT  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGACTGT-CACTGGCCAAAGCTGTGACAATTTGAGTATCAAAAT  193

seq1  AAGCAATGCCATTAATACCTTCCTTTGGCTTCGCAAAGCTGGGGATCGAA  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGCAATGCCATTAATA-CTTCCTTTGGCTTCGCAAAGCTGGGGATCGAA  242

seq1  CTCAGCTTATTTCACACAAAGCAGGCAAATTCTCTACCACAGAGCCATGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTATTTCACACAAAGCAGGCAAATTCTCTACCACAGAGCCATGC  292

seq1  CTTCAACCTAATGGTCTATAACCTGTTGCTTGAATAGAGGTTCAATTCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCTAATGGTCTATAACCTGTTGCTTGAATAGAGGTTCAATTCCC  342

seq1  AGGACCCACACTAGGCAGCAGACAACCATCTGCAATTAGGGGATCTGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCACACTAGGCAGCAGACAACCATCTGCAATTAGGGGATCTGATG  392

seq1  CCCCTTTGGCCTCTGCAGAACTCTCATTGTATATATGCGATTGCACATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGGCCTCTGCAGAACTCTCATTGTATATATGCGATTGCACATAC  442

seq1  GTGTTCTCAGATGTACACACATACACATATAATCAGTTTGTGTATAATAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCAGATGTACACACATACACATATAATCAGTTTGTGTATAATAG  492

seq1  TACATTTTGTATAAAAAATCATAACTGCGCTAATATAAATAAATATTTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGTATAAAAAATCATAACTGCGCTAATATAAATAAATATTTAT  542

seq1  ATGGTTTCAAGTTCCTGTTCCTCTCCCCATATGCCCAATAAATGTCAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCAAGTTCCTGTTCCTCTCCCCATATGCCCAATAAATGTCAAGA  592

seq1  GTAAATGAGTAACTTTACAGTGGACTGTGAGGGACCTGACACTAACCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAGTAACTTTACAGTGGACTGTGAGGGACCTGACACTAACCAGG  642

seq1  TGATCAGAGTGAACCTCAATCGCAAAGGGGCAAATAGAAGCACACGCCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGAGTGAACCTCAATCGCAAAGGGGCAAATAGAAGCACACGCCAA  692

seq1  TGATCAGATGCCGTGAAAAACAGCACCGCTTTCCTGAGATGCTTTTGAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGATGCCGTGAAAAACAGCACCGCTTTCCTGAGATGCTTTTGAAT  742

seq1  GATGCACAGCCAGAATCTAATCAGAGAGCCAAACAGAAAGACATTCTGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACAGCCAGAATCTAATCAGAGAGCCAAACAGAAAGACATTCTGTG  792

seq1  GACCTGCCGACCTTACACGTTGAAGAGAGCCAGACTCTTGCAGGCTACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCGACCTTACACGTTGAAGAGAGCCAGACTCTTGCAGGCTACAG  842

seq1  ACCACGTTTGAAATGAAAGGAAAATAAAGAAAGACGATGACTAAATGTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTTTGAAATGAAAGGAAAATAAAGAAAGACGATGACTAAATGTAT  892

seq1  GTAGCATATGATGCTGAACTGTCTGGCCAACTGGGCTCCAAGGAGCTAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATATGATGCTGAACTGTCTGGCCAACTGGGCTCCAAGGAGCTAGG  942

seq1  CTGGCCTCTTAGATCTTGGCTGCAGACTGTAGGTTTAGTCCAGGTCTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTTAGATCTTGGCTGCAGACTGTAGGTTTAGTCCAGGTCTGTG  992

seq1  CTATCTCTCATCGCTGCTGGATCAGCAAGTGGCTCGGGCATATTGTTTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTCATCGCTGCTGGATCAGCAAGTGGCTCGGGCATATTGTTTTC  1042

seq1  ATGGAGGGAAAAAAAAAAGAAGCAGAACAACTTTAACTACTTAGTTGTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGAAAAAAAAAAGAAGCAGAACAACTTTAACTACTTAGTTGTGT  1092

seq1  CTTGAGCCCAGGTCTCTTCACAGCTGGGAATTC  1131
      |||||||||||||||||||||||||||||||||
seq2  CTTGAGCCCAGGTCTCTTCACAGCTGGGAATTC  1125

seq1: chr18_38585883_38586858
seq2: B6Ng01-039J16.g_67_1041

seq1  GAATTCTCTATGTAGACCAGTCTGGCCTTGAACTCAAGAGATTTGCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTAGACCAGTCTGGCCTTGAACTCAAGAGATTTGCCTTT  50

seq1  TGCCTGGGATTAAAGTCATACACTATGCTTGGCTTCATCTAAATAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGATTAAAGTCATACACTATGCTTGGCTTCATCTAAATAGATTT  100

seq1  TTAATATTCATATATATTAAGATCCATTTTGTGTTGTAAAGGTCTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTCATATATATTAAGATCCATTTTGTGTTGTAAAGGTCTGGTCT  150

seq1  ATAGGTTTTACACATCCATGTCTCTTTGAAATATATATGTATGTATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTTTACACATCCATGTCTCTTTGAAATATATATGTATGTATGTAT  200

seq1  GTATGTATGTATACACTTTAGTATCTAGTTTTGCCTTGGGCCTTATCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGTATACACTTTAGTATCTAGTTTTGCCTTGGGCCTTATCTAA  250

seq1  AGGGGATAACTGAAGAAAATGTAAAGATTACTGAGATATTGAATTGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATAACTGAAGAAAATGTAAAGATTACTGAGATATTGAATTGTAGT  300

seq1  AGTCCTACGTCTGTCACGAAGTAGCAATATGATGGTAAGAACATTAACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTACGTCTGTCACGAAGTAGCAATATGATGGTAAGAACATTAACGT  350

seq1  CTTTCTGGACTGTTTTATAAAGGAAGCTGAACTCATTTCATTTTGAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGACTGTTTTATAAAGGAAGCTGAACTCATTTCATTTTGAGAGT  400

seq1  TTCAGCTTTATAGTTGATTTTGTGTGTATGTGTGTGTGTTTGTAGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTTATAGTTGATTTTGTGTGTATGTGTGTGTGTTTGTAGAAAGT  450

seq1  AGAAACTAGTAGCTTTGATCCAGAGAGATAGTGTTACATTATTTTAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAGTAGCTTTGATCCAGAGAGATAGTGTTACATTATTTTAGTAA  500

seq1  ATTTTGTTACACACACACACACACACACACACACACACACACACACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTACACACACACACACACACACACACACACACACACACACACTT  550

seq1  CCCCATGCCAAATCAAACCCATGACCTTGTTGCCTATAAGGCAGATACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGCCAAATCAAACCCATGACCTTGTTGCCTATAAGGCAGATACTC  600

seq1  CACCACTGAGTTAAATTCCCAGCCCTGACTAATACTACTGAAGTATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGAGTTAAATTCCCAGCCCTGACTAATACTACTGAAGTATACAT  650

seq1  AGATAAGTTTATGGTGAAACATTACAAATTGGTACATATTTTCAGATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTTTATGGTGAAACATTACAAATTGGTACATATTTTCAGATATA  700

seq1  GAAAATACTTTCTTTTTTTTTAAGTCCTTAAAAATAGATAGTCCCCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACTTTCTTTTTTTTTAAGTCCTTAAAAATAGATAGTCCCCTTAG  750

seq1  TTGTCTAGTTTGTCAGTTTATGAATTAAAAATAATTCTGTGTATCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGTTTGTCAGTTTATGAATTAAAAATAATTCTGTGTATCTGTGT  800

seq1  GCTATCTGTGTGTGGGTACCCAATGAGAACAGGAGAGTATTGGATCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTGTGTGTGGGTACCCAATGAGAACAGGAGAGTATTGGATCCCTG  850

seq1  GAGCTGGATACAGGTGCTGGAAACTGAGCAGGAAGTCACTTAACCACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGATACAGGTGCTGGAAACTGAGCAGGAAGTCACTTAACCACAGA  900

seq1  ACCATCTCTCCAACTTCCTAAAAGCATCTTGTTGTTGTTGTTTAATCAGC  950
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  ACCATCTCTCCAACTT-CTAAAAGCATCTTGTTGTTGTGGTTTAATCAGC  949

seq1  TACTGGTGTGTGTGTGTGTGTGTGTG  976
      |||||||||||||||| |||||||||
seq2  TACTGGTGTGTGTGTGGGTGTGTGTG  975