BAC Information

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BAC

Clone NameB6Ng01-040A15
Chromosome18 (Build37)
Map Location 33,609,090 - 33,610,095
singlet/doubletsinglet
Overlap geneD0H4S114
Upstream geneGypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4, EG433170
Downstream geneENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040A15.bB6Ng01-040A15.g
ACCDH867129DH867130
length1,221995
definitionDH867129|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A15, 5' end.DH867130|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttccttttcatttatatctctttgatcttcagcagtagttgcct
tattgcttcagctaagacttcatgtactatattgaataggtttgggaaga
gtggacaatcttgtcttgtttcttattttagtcaaaattcccaattctct
ctgtgtttatgtcgataatggctgtgggtttgctgtaaactgcctttatt
atgttaaggtatgtctcttgtatcccttctctctccaaaagtttatcaca
aaaaagttttgaattttatcaaaggctttttttttttttgcatctaatga
gatgaccatgtggttgttgtctcagttttttatatggggaattaaattta
tcaatttacaacgtgttaaaccattcctgcatctcagatgcctactttgt
cctggtgaatgatcttttgacatgtctgtagattctgtttgcccatgaga
gttatttttttaagagttcttgcatttatgttcataaggggaattgttct
gtaattctctgtattgggtctttatgtggtttaggattccataaaaatga
attcaactatgtattttgtgttaatgttttgaagattaatttgagcagta
ttggcattaactattctttgaaatataatgcaaatctgcactaaaacctt
caggccctgtgcttttttggttggtaggtttttaataactgcatctattt
cactctgcataataggtcattttaaactacttatctgatgctgattactc
tttggggagtgatcatccatcctcactatctaacccaatcactaagcaac
acacgtaggtgccctcactgattagactatattaagctcaaagctcccaa
tgcccctcacacaattcttgggcagattagcccctcactctgactaccag
actgtgcctgatacgtacctattagaaactcgtggacatatcatggtatc
atactgtgactagcgacactacagcccattgatcgtcatcaaggatgtac
ctctggcggtcatcccgtatccactcccaaattgcccaaataatgggcaa
acacaggaactcttggttacaaaagtctcaatgatactatgcttaattaa
ctcacaccataactaaaaaaacccaatgatgttgaaaccattgacatgct
ctaagtattcctggtcagttaggtcagaagatagactttaagtgtttgtg
aaagatcccaaaatacaatgc
gaattccatgatgcctttctacatggaactgtgggcccctggatttatat
agtctgtctctgggttcccacaacccccacatgtttctcatgctcttctt
gtggaaaagtagagttttgatgtttggtttatagtggaataaagacttgg
gatgggaagtaaaatagagggctggtgggtaaagtcagggtttagaaaga
tggtgtggttttaaaatgggattttcctggtggttagaatgcaagtggga
cccctgtcaagcgcttttccttccaactgggggttcctttcacagacgcc
ttcacacccctggaagcagtgtttctttcttgatgccttgctctggaaca
ctctttccacttggagtggaggtcttcctctggtcctctgcctcccagga
ctcctcaacagaaagatgccttcagccttcagaccttgcttcactgagtg
tcattgaaatcccggcagtgttcagagctgtagcccatccattctgagct
tattccgtttcttgtgtccttttaggcgtgtgctagttttgtctagagga
caggctatgagaatctgcttagtggcctctttcgacctgggcagctaagg
atgtacacacggatctgtcgatactgttcctttatgtgcaaagagcagac
tttatgtgctgtgtcttcctgtggagaaagctctttccctccaaacctgg
aggtctgttaagatgctgtgaagtcacctcagtctacccgacaggacaga
gctccgcaacactgacccatgaaatggcttttgccgaataccaaggtagc
caagctgccagccgaagagagtccacagaggagaagagtgaattcttgct
tttggaatgaacgctgtggaggccgtgcagttttctggaaagctgtgctt
aagtcttttacgcaagtcacctagaccttcagagcactgtctgtctgtct
tttatccacccaaaccaggaaaatcaatgcctgtctagatattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_33609090_33610095
seq2: B6Ng01-040A15.g_69_1063 (reverse)

seq1  TTAATAATCTAGACAGGGAATTTGAATTTTTCCCTGGTCTGGGTGGATAA  50
      ||||| ||||||||||| |  ||||   ||| |||||| |||||||||||
seq2  TTAAT-ATCTAGACAGGCA--TTGA---TTTTCCTGGTTTGGGTGGATAA  44

seq1  AAGGACAGACAGACAGTTGCTCTGAAGGTCTAGGTGACTTGTGTAAAAGA  100
      || ||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  AA-GACAGACAGACAG-TGCTCTGAAGGTCTAGGTGACTTGCGTAAAAGA  92

seq1  CCTAAGAACAAGCTTTCCAGAAAACCTGCACGGCCTCCACAGCGTTCATT  150
      | |||| || |||||||||||||| |||||||||||||||||||||||||
seq2  CTTAAGCAC-AGCTTTCCAGAAAA-CTGCACGGCCTCCACAGCGTTCATT  140

seq1  CCAAAAGCAAGAATTCACTCTTCTCCTCTGTGGACTCTCTTCGGCTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCAAGAATTCACTCTTCTCCTCTGTGGACTCTCTTCGGCTGGCA  190

seq1  GCCTGGGCTACCTTGGTATTCGGCAAAAGCCATTTCATGGGTCAGTGCTG  250
      | || |||||||||||||||||||||||||||||||||||||||||| ||
seq2  G-CTTGGCTACCTTGGTATTCGGCAAAAGCCATTTCATGGGTCAGTGTTG  239

seq1  CGGAGCTCTGTCCTGTCGGGTAGACTGAGGTGACTTCACAGCATCCTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGGAGCTCTGTCCTGTCGGGTAGACTGAGGTGACTTCACAGCATCTTAAC  289

seq1  AGACCTCCAGGTTTGGAGGGAAAGAGCTTTCTCCACAGGAAGACACAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCAGGTTTGGAGGGAAAGAGCTTTCTCCACAGGAAGACACAGCA  339

seq1  CATAAAGTCTGCTCTTTGCACATAAAGGAACAGTATCGACAGATCCGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGTCTGCTCTTTGCACATAAAGGAACAGTATCGACAGATCCGTGT  389

seq1  GTACATCCTTAGCTGCCCAGGTCGAAAGAGGCCACTAAGCAGATTCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCCTTAGCTGCCCAGGTCGAAAGAGGCCACTAAGCAGATTCTCAT  439

seq1  AGCCTGTCCTCTAGACAAAACTAGCACACGCCTAAAAGGACACAAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCCTCTAGACAAAACTAGCACACGCCTAAAAGGACACAAGAAAC  489

seq1  GGAATAAGCTCAGAATGGATGGGCTACAGCTCTGAACACTGCCGGGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGCTCAGAATGGATGGGCTACAGCTCTGAACACTGCCGGGATTT  539

seq1  CAATGACACTCAGTGAAGCAAGGTCTGAAGGCTGAAGGCATCTTTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACACTCAGTGAAGCAAGGTCTGAAGGCTGAAGGCATCTTTCTGTT  589

seq1  GAGGAGTCCTGGGAGGCAGAGGACCAGAGGAAGACCTCCACTCCAAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCCTGGGAGGCAGAGGACCAGAGGAAGACCTCCACTCCAAGTGG  639

seq1  AAAGAGTGTTCCAGAGCAAGGCATCAAGAAAGAAACACTGCTTCCAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGTTCCAGAGCAAGGCATCAAGAAAGAAACACTGCTTCCAGGGG  689

seq1  TGTGAAGGCGTCTGTGAAAGGAACCCCCAGTTGGAAGGAAAAGCGCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGCGTCTGTGAAAGGAACCCCCAGTTGGAAGGAAAAGCGCTTGA  739

seq1  CAGGGGTCCCACTTGCATTCTAACCACCAGGAAAATCCCATTTTAAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCCCACTTGCATTCTAACCACCAGGAAAATCCCATTTTAAAACC  789

seq1  ACACCATCTTTCTAAACCCTGACTTTACCCACCAGCCCTCTATTTTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCTTTCTAAACCCTGACTTTACCCACCAGCCCTCTATTTTACTT  839

seq1  CCCATCCCAAGTCTTTATTCCACTATAAACCAAACATCAAAACTCTACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCAAGTCTTTATTCCACTATAAACCAAACATCAAAACTCTACTT  889

seq1  TTCCACAAGAAGAGCATGAGAAACATGTGGGGGTTGTGGGAACCCAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAGAAGAGCATGAGAAACATGTGGGGGTTGTGGGAACCCAGAGA  939

seq1  CAGACTATATAAATCCAGGGGCCCACAGTTCCATGTAGAAAGGCATCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTATATAAATCCAGGGGCCCACAGTTCCATGTAGAAAGGCATCATG  989

seq1  GAATTC  1006
      ||||||
seq2  GAATTC  995