BAC Information

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BAC

Clone NameB6Ng01-040F21
Chromosome18 (Build37)
Map Location 69,709,857 - 69,832,298
singlet/doubletdoublet
Overlap geneTcf4
Upstream geneLOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040F21.bB6Ng01-040F21.g
ACCDH867361DH867362
length1,072375
definitionDH867361|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F21, 5' end.DH867362|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,709,857 - 69,711,102)(69,831,918 - 69,832,298)
sequence
gaattccaaacctcacacaatcacagaaactgtctgcagccgactaaacc
atgcctctgttagagcacgaggcaaaccatagtcagctaaaacagcccca
tatctcagacacctgggattaaaatgaaaaaaatattcttagaatatttc
ttttttctttctttctttctttttttttttttttttttaatttaagaaag
ccaaaattccagaattgtcactacaaacgacttcccactcacggtacttc
tgtagctttagctgcccatgggctgttgatttctcagtccttcgtttcct
gagttctgggaatagagtgttattgaccagtcctgccctcactctctacc
tccatcccttccaccctcccctgtctgtagctttgcatctatgtccagct
acaaacagtatctgagttctaattttcaagatgcctagattgttctgtga
gtttctctgccgtctatccctccattgtagacacttcctgtcatctctcg
cttagattgcttccccggaggttgtaagactcacagagtaatttaataat
gctctgccctataaataggtatgagtatgtcatgcctcttacaggcgctt
ctagtttttctttgtattttacaagtagccttcttgaacatgtaaggtac
tcagatctaccctgtctcccaagaagaggtgagtgattaaacttcactga
catatttatcttgcatatccatgaatctgcacagggagctaggcccagaa
cccaatcctgagcttactaaagaaatgactgcttgtgaggcctgctccta
aggacaggaggagagcagagcttccaccagacaataggagcctggatctt
tgattgcaccgtgcagggcttcctgacgcactatcacttcctcaactcct
tcacccagtattggcaatccaggtaaagaaatagtggcaagtgtatgtga
gttagccgaaggaaaaggtagcaaggttgtgtgagctcagtagagtctgt
ctatagtaacacctaccacatcacactcccccacacaacaccacagacca
cactggtgtgtgcagatggttg
cagttatgaagtagcaacaaagataattttatggctgggggtcaccacaa
catgacgaactatattaaaaggtcacagcattagaaggttgagactcact
ggtttagagggacactgaagtctaagcttcatttcagagacgaaatctag
gggtaagaatggccaagtgacttacctaacaactagtttagaaccagaaa
agagctaatctaactgagaaagcttatgccattaaacaattttactgggc
atataaatatacacttacgagaggaaaatgagttaagggtcacatgcggg
cttgacttctggagctttggttagaaaactctgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69709857_69711102
seq2: B6Ng01-040F21.b_44_1115

seq1  GAATTCCAAACCTCACACAATCACAGAAACTGTCTGCAGCCGACTAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCTCACACAATCACAGAAACTGTCTGCAGCCGACTAAACC  50

seq1  ATGCCTCTGTTAGAGCACGAGGCAAACCATAGTCAGCTAAAACAGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTGTTAGAGCACGAGGCAAACCATAGTCAGCTAAAACAGCCCCA  100

seq1  TATCTCAGACACCTGGGATTAAAATGAAAAAAATATTCTTAGAATATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGACACCTGGGATTAAAATGAAAAAAATATTCTTAGAATATTTC  150

seq1  TTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTAATTTAAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTAATTTAAGAAAG  200

seq1  CCAAAATTCCAGAATTGTCACTACAAACGACTTCCCACTCACGGTACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTCCAGAATTGTCACTACAAACGACTTCCCACTCACGGTACTTC  250

seq1  TGTAGCTTTAGCTGCCCATGGGCTGTTGATTTCTCAGTCCTTCGTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTTAGCTGCCCATGGGCTGTTGATTTCTCAGTCCTTCGTTTCCT  300

seq1  GAGTTCTGGGAATAGAGTGTTATTGACCAGTCCTGCCCTCACTCTCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGGGAATAGAGTGTTATTGACCAGTCCTGCCCTCACTCTCTACC  350

seq1  TCCATCCCTTCCACCCTCCCCTGTCTGTAGCTTTGCATCTATGTCCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCTTCCACCCTCCCCTGTCTGTAGCTTTGCATCTATGTCCAGCT  400

seq1  ACAAACAGTATCTGAGTTCTAATTTTCAAGATGCCTAGATTGTTCTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGTATCTGAGTTCTAATTTTCAAGATGCCTAGATTGTTCTGTGA  450

seq1  GTTTCTCTGCCGTCTATCCCTCCATTGTAGACACTTCCTGTCATCTCTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGCCGTCTATCCCTCCATTGTAGACACTTCCTGTCATCTCTCG  500

seq1  CTTAGATTGCTTCCCCGGAGGTTGTAAGACTCACAGAGTAATTTAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTGCTTCCCCGGAGGTTGTAAGACTCACAGAGTAATTTAATAAT  550

seq1  GCTCTGCCCTATAAATAGGTATGAGTATGTCATGCCTCTTACAGGCGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCCTATAAATAGGTATGAGTATGTCATGCCTCTTACAGGCGCTT  600

seq1  CTAGTTTTTCTTTGTATTTTACAAGTAGCCTTCTTGAACATGTAAGGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTTCTTTGTATTTTACAAGTAGCCTTCTTGAACATGTAAGGTAC  650

seq1  TCAGATCTACCCTGTCTCCCAAGAAGAGGTGAGTGATTAAACTTCACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTACCCTGTCTCCCAAGAAGAGGTGAGTGATTAAACTTCACTGA  700

seq1  CATATTTATCTTGCATATCCATGAATCTGCACAGGGAGCTAGGCCCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTATCTTGCATATCCATGAATCTGCACAGGGAGCTAGGCCCAGAA  750

seq1  CCCAATCCTGAGCTTACTAAAGAAATGACTGCTTGTGAGGCCTGCTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCCTGAGCTTACTAAAGAAATGACTGCTTGTGAGGCCTGCTCCTA  800

seq1  AGGACAGGAGGAGAGCAGAGCTTCCACCAGACAATAGGAGCCTGGATC-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGACAGGAGGAGAGCAGAGCTTCCACCAGACAATAGGAGCCTGGATCTT  850

seq1  TGATTGCACCGTGCAGGGCTTCCTGACGCACTATCACTTCCTCAACTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCACCGTGCAGGGCTTCCTGACGCACTATCACTTCCTCAACTCCT  900

seq1  TCACCCAGTATTGGCAATCCAGGTAAAGAAATAGTGGCAAGTGTATGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGTATTGGCAATCCAGGTAAAGAAATAGTGGCAAGTGTATGTGA  950

seq1  GTTAGCCGAAGGAAAAAGGGTAGCAAGGTTTGTGTGAGCTCAGTTAGAGC  999
      ||||||||||||||||  |||||||||| |||||||||||||| ||||| 
seq2  GTTAGCCGAAGGAAAA--GGTAGCAAGG-TTGTGTGAGCTCAG-TAGAGT  996

seq1  CTGTCTAATAGTAAACAAACCTACACACACACACACACACACACACACAC  1049
      |||||| ||||||   | ||||||   ||||  ||||| | | |||||| 
seq2  CTGTCT-ATAGTA---ACACCTAC---CACA-TCACACTCCCCCACACA-  1037

seq1  ACACACACAGACACACACTGTGTGTGTGCAAGATGGTTTGCCCCTGGTTG  1099
      |||| ||||||| ||||||| |||||||| ||||||||            
seq2  ACAC-CACAGAC-CACACTG-GTGTGTGC-AGATGGTTG-----------  1072

seq1  CTTTGACAGTTTCAGAGCTGCAGACTGGAAATTTATAGGGAACCTTGGTT  1149
                                                        
seq2  --------------------------------------------------  1072

seq1  TCAAATGCGGAGTGAACTTTGCCCGGCACAGCGTTCAGTGGGTTCTGGTG  1199
                                                        
seq2  --------------------------------------------------  1072

seq1  GAGGTGGGTGTCTGCCTCATGTCATATGAATGAAATGCAGATGGTTG  1246
                                                     
seq2  -----------------------------------------------  1072

seq1: chr18_69831918_69832298
seq2: B6Ng01-040F21.g_69_449 (reverse)

seq1  CACTCACGTGCACACACACACACACACACACACACACACACACAGAGTTT  50
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACACACACACACACACACACACACACACACACACACAGAGTTT  50

seq1  TCTAACCAAAGCTCCAGAAGTCAAGCCCGCATGTGACCCTTAACTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCAAAGCTCCAGAAGTCAAGCCCGCATGTGACCCTTAACTCATTT  100

seq1  TCCTCTCGTAAGTGTATATTTATATGCCCAGTAAAATTGTTTAATGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCGTAAGTGTATATTTATATGCCCAGTAAAATTGTTTAATGGCAT  150

seq1  AAGCTTTCTCAGTTAGATTAGCTCTTTTCTGGTTCTAAACTAGTTGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCTCAGTTAGATTAGCTCTTTTCTGGTTCTAAACTAGTTGTTAG  200

seq1  GTAAGTCACTTGGCCATTCTTACCCCTAGATTTCGTCTCTGAAATGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCACTTGGCCATTCTTACCCCTAGATTTCGTCTCTGAAATGAAGC  250

seq1  TTAGACTTCAGTGTCCCTCTAAACCAGTGAGTCTCAACCTTCTAATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTCAGTGTCCCTCTAAACCAGTGAGTCTCAACCTTCTAATGCTG  300

seq1  TGACCTTTTAATATAGTTCGTCATGTTGTGGTGACCCCCAGCCATAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTTAATATAGTTCGTCATGTTGTGGTGACCCCCAGCCATAAAAT  350

seq1  TATCTTTGTTGCTACTTCATAACTGGAATTC  381
      |||||||||||||||||||||||||||||||
seq2  TATCTTTGTTGCTACTTCATAACTGGAATTC  381