BAC Information

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BAC

Clone NameB6Ng01-041A24
Chromosome18 (Build37)
Map Location 86,725,539 - 86,890,852
singlet/doubletdoublet
Overlap geneCbln2
Upstream geneLOC665382, LOC545269, LOC545270, LOC665402, Neto1
Downstream geneLOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041A24.bB6Ng01-041A24.g
ACCDH867835DH867836
length1,091488
definitionDH867835|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A24, 5' end.DH867836|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,889,737 - 86,890,852)(86,725,539 - 86,726,032)
sequence
gaattcaacgcagctctagaaccctggggagtcctgtggtaggcattaaa
agcagggaatgaatatttcttttctgaattaagttgtcaattagatcatt
tccactacacactgagtgtctgtgggcaagcaaatgaagatgatgatata
tgagcctgcagacacctaaatgatcacagagatggagagacacaccacaa
tgcatctagaaagatagaacttaactcctgttatctgcagaaggcaaagt
catgtggctttcatccttaaaattcacaagcaatcctattgagtttggaa
gtgtaaagagatttaattttccgacaatccatattttgatataatactac
tatatagaacttaagacatgacaagatggtttaatttttttctctcaaac
tcttgtaaatcctattacattgcttttatgctttgtgaagaagtgctgtg
gactcttacatcaagaatacctgtaatataaagcagaatttaatgaatat
gtgtgtgtgttttatgttttttaatagtctccaacaacaaagcagtaagc
ataatttttggtaaaattttgtctacaaaaatgtctaaaatgctcggcta
atagacagtcttaattaatgtgtatggctcatcagctcactaaatgtcaa
gttattaaattcaagaaaactcatttcggttctgtactttctatcctgac
acatcttagaagcacactcacacagtgcacagatcatcatttagaatcac
ccagtgcaacatgtttctatatttatgttgtggaaatgtaaacacatatt
aacgatttttattaacagcaagtggaaaatatagctgaacaattgataaa
aggtctttgctctttttgctacagaggaagcataatgtaacaaccctgtt
tttgtttttcttgcagtgtcaatgtttctcttcatatttcagatccctga
aatctagctatccatatatttttattatatcaaactaaagtatcagtgat
atgtcacagtgtcaacttacagtattttgaacataaactttctgagtagt
gccatggagttcttggtattatgaaatggacgatcactcca
cttgattcctgaggtggcaagcaactcagaggaggaatgtgtcaacttat
gaaatcccaactttactgaactcattacagctgctgaaagagaacggccc
tgtcatatcaagaatcagaggatacgtagtattcagggacatagaataca
tggtgcctgcattgacttggacaaagttgatgggatgttgatgttggatt
aacgtaagggaagggatggaagggtctggcatacacatattagtagatgt
tgacattagttatttcagaagggaaaaaacagactataaacatcagcata
gaacaaaattgcaactccattttcaatccatttagggctctaacaggccc
aagtttatctcagtggtatcacttctcagagccatgagcaggaaagctgc
caaaatactcatgcctctgcagcaagaatccagtaaatctgggaatggga
gcactggctgtataagtcatccatgtgtggtgcagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_86889737_86890852
seq2: B6Ng01-041A24.b_41_1131 (reverse)

seq1  TGGAGTGATCAGTCACATTTTCATAATAACCAAGAAACTACATTGGCCAC  50
      |||||||||| ||| || ||||||||| |||||| |||| || ||||   
seq2  TGGAGTGATC-GTC-CA-TTTCATAAT-ACCAAG-AACTCCA-TGGC--A  42

seq1  CTACTCAGAAAGTGTTATGTATCACAAATACTGTTAAGTTTGAACACTGT  100
      ||||||||||||| |||||| ||| |||||||| ||||||   |||||||
seq2  CTACTCAGAAAGT-TTATGT-TCA-AAATACTG-TAAGTT--GACACTGT  86

seq1  GACATATACACTTGATACTTTAGTTTTGATATAATAAAAATATATGGATT  150
      ||||||| ||| ||||||||||| |||||||||||||||||||||||| |
seq2  GACATAT-CAC-TGATACTTTAG-TTTGATATAATAAAAATATATGGA-T  132

seq1  AGCTAGATTTTCCAGGGATCTGGAAATATGGAAGAGAAACATTGACCTTC  200
      ||||||||||  ||||||||| ||||||| ||||||||||||||||   |
seq2  AGCTAGATTT--CAGGGATCT-GAAATAT-GAAGAGAAACATTGAC--AC  176

seq1  TGCAAGAAAAACAAAAACAGGGTTGTTACATTATGCTTCCTCTGTAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAAAAACAAAAACAGGGTTGTTACATTATGCTTCCTCTGTAGCAA  226

seq1  AAAGAGCAAAGACCTTTTTATCAATTGTTCAGCTATATTTTCCACTTGCT  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAAAGACC-TTTTATCAATTGTTCAGCTATATTTTCCACTTGCT  275

seq1  GTTAATAAAAATCGTTAATATGTGTTTACATTTCCACAACATAAATATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAAAAATCGTTAATATGTGTTTACATTTCCACAACATAAATATAG  325

seq1  AAACATGTTGCACTGGGTGATTCTAAATGATGATCTGTGCACTGTGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTTGCACTGGGTGATTCTAAATGATGATCTGTGCACTGTGTGAG  375

seq1  TGTGCTTCTAAGATGTGTCAGGATAGAAAGTACAGAACCGAAATGAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTAAGATGTGTCAGGATAGAAAGTACAGAACCGAAATGAGTTT  425

seq1  TCTTGAATTTAATAACTTGACATTTAGTGAGCTGATGAGCCATACACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTTAATAACTTGACATTTAGTGAGCTGATGAGCCATACACATT  475

seq1  AATTAAGACTGTCTATTAGCCGAGCATTTTAGACATTTTTGTAGACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGACTGTCTATTAGCCGAGCATTTTAGACATTTTTGTAGACAAAA  525

seq1  TTTTACCAAAAATTATGCTTACTGCTTTGTTGTTGGAGACTATTAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCAAAAATTATGCTTACTGCTTTGTTGTTGGAGACTATTAAAAAA  575

seq1  CATAAAACACACACACATATTCATTAAATTCTGCTTTATATTACAGGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACACACACACATATTCATTAAATTCTGCTTTATATTACAGGTAT  625

seq1  TCTTGATGTAAGAGTCCACAGCACTTCTTCACAAAGCATAAAAGCAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGTAAGAGTCCACAGCACTTCTTCACAAAGCATAAAAGCAATGT  675

seq1  AATAGGATTTACAAGAGTTTGAGAGAAAAAAATTAAACCATCTTGTCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATTTACAAGAGTTTGAGAGAAAAAAATTAAACCATCTTGTCATG  725

seq1  TCTTAAGTTCTATATAGTAGTATTATATCAAAATATGGATTGTCGGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTTCTATATAGTAGTATTATATCAAAATATGGATTGTCGGAAAA  775

seq1  TTAAATCTCTTTACACTTCCAAACTCAATAGGATTGCTTGTGAATTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTCTTTACACTTCCAAACTCAATAGGATTGCTTGTGAATTTTAA  825

seq1  GGATGAAAGCCACATGACTTTGCCTTCTGCAGATAACAGGAGTTAAGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAAGCCACATGACTTTGCCTTCTGCAGATAACAGGAGTTAAGTTC  875

seq1  TATCTTTCTAGATGCATTGTGGTGTGTCTCTCCATCTCTGTGATCATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCTAGATGCATTGTGGTGTGTCTCTCCATCTCTGTGATCATTTA  925

seq1  GGTGTCTGCAGGCTCATATATCATCATCTTCATTTGCTTGCCCACAGACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGCAGGCTCATATATCATCATCTTCATTTGCTTGCCCACAGACA  975

seq1  CTCAGTGTGTAGTGGAAATGATCTAATTGACAACTTAATTCAGAAAAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTGTAGTGGAAATGATCTAATTGACAACTTAATTCAGAAAAGAA  1025

seq1  ATATTCATTCCCTGCTTTTAATGCCTACCACAGGACTCCCCAGGGTTCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTCCCTGCTTTTAATGCCTACCACAGGACTCCCCAGGGTTCTA  1075

seq1  GAGCTGCGTTGAATTC  1116
      ||||||||||||||||
seq2  GAGCTGCGTTGAATTC  1091

seq1: chr18_86725539_86726032
seq2: B6Ng01-041A24.g_66_559

seq1  GAATTCCTTGATTCCTGAGGTGGCAAGCAACTCAGAGGAGGAATGTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATTCCTGAGGTGGCAAGCAACTCAGAGGAGGAATGTGTCA  50

seq1  ACTTATGAAATCCCAACTTTACTGAACTCATTACAGCTGCTGAAAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGAAATCCCAACTTTACTGAACTCATTACAGCTGCTGAAAGAGAA  100

seq1  CGGCCCTGTCATATCAAGAATCAGAGGATACGTAGTATTCAGGGACATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCTGTCATATCAAGAATCAGAGGATACGTAGTATTCAGGGACATAG  150

seq1  AATACATGGTGCCTGCATTGACTTGGACAAAGTTGATGGGATGTTGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGGTGCCTGCATTGACTTGGACAAAGTTGATGGGATGTTGATGT  200

seq1  TGGATTAACGTAAGGGAAGGGATGGAAGGGTCTGGCATACACATATTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAACGTAAGGGAAGGGATGGAAGGGTCTGGCATACACATATTAGT  250

seq1  AGATGTTGACATTAGTTATTTCAGAAGGGAAAAAACAGACTATAAACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTGACATTAGTTATTTCAGAAGGGAAAAAACAGACTATAAACATC  300

seq1  AGCATAGAACAAAATTGCAACTCCATTTTCAATCCATTTAGGGCTCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAACAAAATTGCAACTCCATTTTCAATCCATTTAGGGCTCTAAC  350

seq1  AGGCCCAAGTTTATCTCAGTGGTATCACTTCTCAGAGCCATGAGCAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAAGTTTATCTCAGTGGTATCACTTCTCAGAGCCATGAGCAGGAA  400

seq1  AGCTGCCAAAATACTCATGCCTCTGCAGCAAGAATCCAGTAAATCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCAAAATACTCATGCCTCTGCAGCAAGAATCCAGTAAATCTGGGA  450

seq1  ATGGGAGCACTGGCTGTATAAGTCAGCCATGTGTGGTGCAGATG  494
      ||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGGAGCACTGGCTGTATAAGTCATCCATGTGTGGTGCAGATG  494