BAC Information

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BAC

Clone NameB6Ng01-041F01
Chromosome18 (Build37)
Map Location 87,237,428 - 87,374,473
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008, LOC100039961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041F01.bB6Ng01-041F01.g
ACCDH868011DH868012
length1,006958
definitionDH868011|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F01, 5' end.DH868012|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,373,941 - 87,374,473)(87,237,428 - 87,238,393)
sequence
gaattctcctttccccttttaatttatatctgttccttctctatccttag
aatttgggagttaagaattccagtattcttagaagatgaaaggaagagaa
actgagagccactggcctagcttgagtatctgagacctcaatgctgaccc
ccagtgttaaacttcctccaacaaagatatacccactccaattaggccac
atctcctaatagtgtcataccccatggacccagcattcacacatatgagt
ctataggggcattcctattgaaaccaccacattccaataccttgtatcca
tagcattttagccatgatataatgcaaaatgaatttattccaacttcaaa
agtccccataatttatctcactatcagcactgactccaaagttaaaagtc
tcctctgagactcatgcaatctcttaattataataaactgtaaaatcaaa
attaaaaaaaaccaaatatttctagcatatatggaagaggatatactatt
tcaaaatggaggaaagggaacatagtgagaaaatactgaagcaaagctac
attgaaaagttgtgtggcagctctgcatctttatgtctgatatcaaagca
ctctttgatatccaacttctttcatctttattgactgcaacagactgcta
tctatttggctggttccattccctgtcattaactctgtttggcaggtatg
ccatacctctggcacctccaaatttttgcatttttaaggcaatcaagatt
ttatcttcacaacctttacacaatggcctttcgaggcatccatgcatggc
ctggagggttttagtaacagagggatattttcatgacaccttttctttct
atccttgactctaaggccagaactgtgaaacctcagctgccaagttcagc
tgcccatgttctgctgctttctagggctgaaacatgacctcctcattcaa
ttacattcgataagctttctcttttcagtggttgtctttaagacctagag
ttggct
gaattccttatattctcttttcttaatatgtattctcttatgttaatgtt
attctcaaatgttaatgttatttccttttggtaatatttattcttttata
ttaatatactattctcttatgttagtatattttagtatattaatctcttt
tattaatttttttattcatcttatgttaatgcatgtacaaagcaatttat
ttgtaagactacttagaaaactaatctaatcactacagatacattgaagg
atgtgttttctacccctagcgtcaattttaaatattaccttctctcatct
taacattaaattgttactgattttcattgagagttacaatataatctaga
ttcctattttcttagttttattttgcttcatcttttaagttagtataaat
gtaaattgttcaatatcaattattccaataactacttatagattttagaa
ttgtttctacaattctggaaagtagttattcatactggataaaggaaact
ttacccaacctacaactcttccttttgtttctttcctactcaatgtagtg
acaatgggtagattataacacccagccagaaactgaaatgagtaaacgag
gaaaaaaaaggataattatataaacaaaggattttaagattttcacattt
atgttttttcaaaaatgtcaaagagaattaaagtttaatattgaagtgat
tggttgtgttctgttcagtgcattttgcataagaaatctcataacatctt
aaaaaagaagactggaataatcattagcattttcactttgaggatgtcat
gagagagaaatgtcttgccatctcttgctgtagcaacccatgacactgga
tttaattcgatatgttcatcacccattctgagaaactgctgaaggggaca
cagcctgtttgcttgcagaataaatgtactacggattatttatttattta
tttaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87373941_87374473
seq2: B6Ng01-041F01.b_44_576 (reverse)

seq1  TTTTCTCACTATGTTCCCTTTCCTCCATTTTGAAATAGTATATCCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCACTATGTTCCCTTTCCTCCATTTTGAAATAGTATATCCTCTTC  50

seq1  CATATATGCTAGAAATATTTGGTTTTTTTTAATTTTGATTTTACAGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGCTAGAAATATTTGGTTTTTTTTAATTTTGATTTTACAGTTTA  100

seq1  TTATAATTAAGAGATTGCATGAGTCTCAGAGGAGACTTTTAACTTTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTAAGAGATTGCATGAGTCTCAGAGGAGACTTTTAACTTTGGAG  150

seq1  TCAGTGCTGATAGTGAGATAAATTATGGGGACTTTTGAAGTTGGAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTGATAGTGAGATAAATTATGGGGACTTTTGAAGTTGGAATAAA  200

seq1  TTCATTTTGCATTATATCATGGCTAAAATGCTATGGATACAAGGTATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGCATTATATCATGGCTAAAATGCTATGGATACAAGGTATTGG  250

seq1  AATGTGGTGGTTTCAATAGGAATGCCCCTATAGACTCATATGTGTGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTGGTTTCAATAGGAATGCCCCTATAGACTCATATGTGTGAATG  300

seq1  CTGGGTCCATGGGGTATGACACTATTAGGAGATGTGGCCTAATTGGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCATGGGGTATGACACTATTAGGAGATGTGGCCTAATTGGAGTG  350

seq1  GGTATATCTTTGTTGGAGGAAGTTTAACACTGGGGGTCAGCATTGAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATCTTTGTTGGAGGAAGTTTAACACTGGGGGTCAGCATTGAGGTC  400

seq1  TCAGATACTCAAGCTAGGCCAGTGGCTCTCAGTTTCTCTTCCTTTCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATACTCAAGCTAGGCCAGTGGCTCTCAGTTTCTCTTCCTTTCATCT  450

seq1  TCTAAGAATACTGGAATTCTTAACTCCCAAATTCTAAGGATAGAGAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAATACTGGAATTCTTAACTCCCAAATTCTAAGGATAGAGAAGGA  500

seq1  ACAGATATAAATTAAAAGGGGAAAGGAGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  ACAGATATAAATTAAAAGGGGAAAGGAGAATTC  533

seq1: chr18_87237428_87238393
seq2: B6Ng01-041F01.g_66_1023

seq1  GAATTCCTTATATTCTCTTTTCTTAATATGTATTCTCTTATGTTAATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATATTCTCTTTTCTTAATATGTATTCTCTTATGTTAATGTT  50

seq1  ATTCTCAAATGTTAATGTTATTTCCTTTTGGTAATATTTATTCTTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAATGTTAATGTTATTTCCTTTTGGTAATATTTATTCTTTTATA  100

seq1  TTAATATACTATTCTCTTATGTTAGTATATTTTAGTATATTAATCTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATACTATTCTCTTATGTTAGTATATTTTAGTATATTAATCTCTTT  150

seq1  TATTAATTTTTTTATTCATCTTATGTTAATGCATGTACAAAGCAATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTTTTTATTCATCTTATGTTAATGCATGTACAAAGCAATTTAT  200

seq1  TTGTAAGACTACTTAGAAAACTAATCTAATCACTACAGATACATTGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGACTACTTAGAAAACTAATCTAATCACTACAGATACATTGAAGG  250

seq1  ATGTGTTTTCTACCCCTAGCGTCAATTTTAAATATTACCTTCTCTCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTCTACCCCTAGCGTCAATTTTAAATATTACCTTCTCTCATCT  300

seq1  TAACATTAAATTGTTACTGATTTTCATTGAGAGTTACAATATAATCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTAAATTGTTACTGATTTTCATTGAGAGTTACAATATAATCTAGA  350

seq1  TTCCTATTTTCTTAGTTTTATTTTGCTTCATCTTTTAAGTTAGTATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTTTCTTAGTTTTATTTTGCTTCATCTTTTAAGTTAGTATAAAT  400

seq1  GTAAATTGTTCAATATCAATTATTCCAATAACTACTTATAGATTTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGTTCAATATCAATTATTCCAATAACTACTTATAGATTTTAGAA  450

seq1  TTGTTTCTACAATTCTGGAAAGTAGTTATTCATACTGGATAAAGGAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTACAATTCTGGAAAGTAGTTATTCATACTGGATAAAGGAAACT  500

seq1  TTACCCAACCTACAACTCTTCCTTTTGTTTCTTTCCTACTCAATGTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAACCTACAACTCTTCCTTTTGTTTCTTTCCTACTCAATGTAGTG  550

seq1  ACAATGGGTAGATTATAACACCCAGCCAGAAACTGAAATGAGTAAACGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGGTAGATTATAACACCCAGCCAGAAACTGAAATGAGTAAACGAG  600

seq1  GAAAAAAAAGGATAATTATATAAACAAAGGATTTTAAGATTTTCACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAGGATAATTATATAAACAAAGGATTTTAAGATTTTCACATTT  650

seq1  ATG-TTTTTCAAAAATGTCAAAGAGAATTTAAGTTTAATATTGAAGTGAT  699
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGTTTTTTCAAAAATGTCAAAGAGAATTAAAGTTTAATATTGAAGTGAT  700

seq1  TGGTTGTGTTCTGTTCAGTGCATTTTGCATAAGAAATCTCATAACATCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGTTCTGTTCAGTGCATTTTGCATAAGAAATCTCATAACATCTT  750

seq1  CAAAAAAGAAGACTGGAATAATCATTAGCATTTTCACTTTGAGGATGTCA  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAAAGAAGACTGGAATAATCATTAGCATTTTCACTTTGAGGATGTCA  799

seq1  TGAGAGAGAAATGTCTTGCCATCTCTGCATGTAGCAACCCATGACACTGG  849
      ||||||||||||||||||||||||||   ||||||||||||||||||| |
seq2  TGAGAGAGAAATGTCTTGCCATCTCTTGCTGTAGCAACCCATGACACT-G  848

seq1  GATTTAATTCAGATATGTTCATCACCCATTCTGAGAGACTGCTG-AGGGG  898
      |||||||||| ||||||||||||||||||||||||| ||||||| |||||
seq2  GATTTAATTC-GATATGTTCATCACCCATTCTGAGAAACTGCTGAAGGGG  897

seq1  ACACAGCCTTGTTGCTTAGCAGAAGTAAATGTAACTACTGGTTTATTTTA  948
      |||||||||  |||||| |||||| ||||||| ||||| || ||| ||||
seq2  ACACAGCCTGTTTGCTT-GCAGAA-TAAATGT-ACTAC-GGATTA-TTTA  942

seq1  TTTTATTTTATTTTATTT  966
      |||   ||||||| ||||
seq2  TTT--ATTTATTTAATTT  958