BAC Information

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BAC

Clone NameB6Ng01-041J14
Chromosome5 (Build37)18 (Build37)
Map Location 105,448,505 - 105,448,70963,601,712 - 63,602,659
singlet/doubletsingletsinglet
Overlap gene5830443L24Rik
Upstream geneHsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790
Downstream geneBC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041J14.bB6Ng01-041J14.g
ACCDH868216DH868217
length835949
definitionDH868216|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J14, 5' end.DH868217|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,448,505 - 105,448,709)(63,601,712 - 63,602,659)
sequence
gaattctttgtttagctctgagcccgatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggatagtaaagatcctttcccaatctgttggtggccttt
ttgtcttattgacggtgtcttttgccttacgaaagctttgcaattttatg
aggtcccatttgtcgattttcgatcttacagcacaagccattgctgttct
attcagaaatttttccctggtgcacatatcttagagacttttccccactt
tctcctctataagtttcagtgtctctggttttatgtggagttccttgatc
cacttagatttgatcttagtacaaggagataggaatggatcaattcacat
tcttctacatgataaccaccagttttgcagcaccatttgttgaaaatgtt
gtcttttttccactggatggttttagctcccttgtcaaagatcaagtaac
cataggtgtgtgggttcatttctgggtcttcaattctattccattgatct
acttgtctgtcgctataccagtaccatgaagtttttatcacaattgctct
gtagtacagctttaggtcaggtataatgattccaccagaggttcttttat
cattgagagtagtttttgatatactaggtttttgttattccagatgaatt
tgcaaatagccatttctaatttcgttgaagaactgagttggaattttgat
gaggattgcattgaatctgtagattgcctttggcaggatagccattttta
ctatattatcctgcaatcatgagcattggagatct
gaattcaaactattgaaaaaaaaatcaagaaagagaacagtagtggggac
ttaataatgtttcctaaattttgactctttggtatgtatgccctgagaca
ggatgtgtaaatatggtaatatttattctactgtatactacaggtataat
tgggatctgaatcatcagatggtaaggtactcaagaggagcataaagctg
agtgggccaggcctaatcagggaagctttaaacagcagtaaggaactgaa
gagatgtcagggagtttgattcctggtaagcacattgtaaagccgggtgt
cggggcatttccgtgtagttcccacactggggaggtggagattatcctct
ggggcttgctggacatccaacctatcctgacaagtttcagggcaacatga
gaccctctctctaatagcaaggtgggcagtgtttgagaaacagtgcccaa
ggttatcccttggctggcacacaagaagcatgaaaaaacgggcaaaggta
ttttagagaaatatttttccagttctttacaaagtacaaagaactttcga
agaacaactttgaagtgacttgttatgtggcaatagagaagtgataaaac
taaacactggagcaacaacaacaaaaaagtaataatgaataaccaaaatc
ctaaagctgaggcaaggaaaagaaaaaataatcattatcaataatcaatt
acagcacttcacaaataaaagagaagacatgaactccaaatgtataatat
tagagaggtgacatctctgcaggttctacagatagaaagatcaggaccat
gctactgagagaagggtaaacaacgtgaagaagtatgtgccggtacattt
ggagaaataggcaaaaaggccaatttcattctaaagttcattcgtcccat
aacacactcaacaagaaatggatggcatgaagaatcaacctgttgtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_105448505_105448709
seq2: B6Ng01-041J14.b_605_809 (reverse)

seq1  ACAGATTCAATGCAATCCCCATCAAAATGCCCACTCAATTCTTCAAC-TA  49
      |||||||||||||||||| ||||||||| || ||||| |||||||||  |
seq2  ACAGATTCAATGCAATCCTCATCAAAATTCCAACTCAGTTCTTCAACGAA  50

seq1  ATTAGAAAGGATAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGA  99
      |||||||| |   |||||||||||||||||||||||| |||||||||| |
seq2  ATTAGAAATGGCTATTTGCAAATTCATCTGGAATAAC-AAAAACCTAGTA  99

seq1  TAGCAAAAACTATTCTCAATGATAAAAGAACCTCTGGTGGAATCACCATG  149
      || ||||||||| ||||||||||||||||||||||||||||||||  || 
seq2  TATCAAAAACTACTCTCAATGATAAAAGAACCTCTGGTGGAATCATTATA  149

seq1  CCTGACCTCACGTTGTACTACAGAGCAATTGTGATAAAAACTGCATGGTA  199
      |||||||| | | ||||||||||||||||||||||||||||| |||||||
seq2  CCTGACCTAAAGCTGTACTACAGAGCAATTGTGATAAAAACTTCATGGTA  199

seq1  CTGGTA  205
      ||||||
seq2  CTGGTA  205

seq1: chr18_63601712_63602659
seq2: B6Ng01-041J14.g_65_1012

seq1  GAATTCAAACTA-GGAAAAAAAAATCAAGAAAGAGAACAGTAGTGGGGAC  49
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTATTGAAAAAAAAATCAAGAAAGAGAACAGTAGTGGGGAC  50

seq1  TTAATAATGTTTCCTAAATTTTGACTCTTTGGTATGTATGCCCTGAGACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATGTTTCCTAAATTTTGACTCTTTGGTATGTATGCCCTGAGACA  100

seq1  GGATGTGTAAATATGGTAATATTTATTCTACTGTATACTACAGGTATAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGTAAATATGGTAATATTTATTCTACTGTATACTACAGGTATAAT  150

seq1  TGGGATCTGAATCATCAGATGGTAAGGTACTCAAGAGGAGCATAAAGCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTGAATCATCAGATGGTAAGGTACTCAAGAGGAGCATAAAGCTG  200

seq1  AGTGGGCCAGGCCTAATCAGGGAAGCTTTAAACAGCAGTAAGGAACTGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCCAGGCCTAATCAGGGAAGCTTTAAACAGCAGTAAGGAACTGAA  250

seq1  GAGATGTCAGGGAGTTTGATTCCTGGTAAGCACATTGTAAAGCCGGGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCAGGGAGTTTGATTCCTGGTAAGCACATTGTAAAGCCGGGTGT  300

seq1  CGGGGCATTTCCGTGTAGTTCCCACACTGGGGAGGTGGAGATTATCCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCATTTCCGTGTAGTTCCCACACTGGGGAGGTGGAGATTATCCTCT  350

seq1  GGGGCTTGCTGGACATCCAACCTATCCTGACAAGTTTCAGGGCAACATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTGCTGGACATCCAACCTATCCTGACAAGTTTCAGGGCAACATGA  400

seq1  GACCCTCTCTCTAATAGCAAGGTGGGCAGTGTTTGAGAAACAGTGCCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCTCTCTAATAGCAAGGTGGGCAGTGTTTGAGAAACAGTGCCCAA  450

seq1  GGTTATCCCTTGGCTGGCACACAAGAAGCATGAAAAAACGGGCAAAGGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCCCTTGGCTGGCACACAAGAAGCATGAAAAAACGGGCAAAGGTA  500

seq1  TTTTAGAGAAATATTTTTCCAGTTCTTTACAAAGTACAAAGAACTTTCGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGAAATATTTTTCCAGTTCTTTACAAAGTACAAAGAACTTTCGA  550

seq1  AGAACAACTTTGAAGTGACTTGTTATGTGGCAATAGAGAAGTGATAAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACTTTGAAGTGACTTGTTATGTGGCAATAGAGAAGTGATAAAAC  600

seq1  TAAACACTGGAGCAACAACAACAAAAAAGTAATAATGAATAACCAAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTGGAGCAACAACAACAAAAAAGTAATAATGAATAACCAAAATC  650

seq1  CTAAAGCTGAGGCAAGGAAAAGAAAAAATAATCATTATCAATAATCAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCTGAGGCAAGGAAAAGAAAAAATAATCATTATCAATAATCAATT  700

seq1  ACAGCACTTCACAAATAAAAGAGAAGACATGAACTCCAAATGTATAATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTTCACAAATAAAAGAGAAGACATGAACTCCAAATGTATAATAT  750

seq1  TAGAGAGGTGACATCTCTGCAGGTTCTACAGATAGAAAGATCAGGACCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGTGACATCTCTGCAGGTTCTACAGATAGAAAGATCAGGACCAT  800

seq1  GCTACTGAGAGAAGGGTAAACAAACGTGAAGAAGTATGTGCCGGTACATT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTACTGAGAGAAGGGTAAAC-AACGTGAAGAAGTATGTGCCGGTACATT  849

seq1  TGGAGAAATAGGCAAAAAGGCCAAATTCATTCTAAAGTTCAATCGTCCCA  899
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TGGAGAAATAGGCAAAAAGGCCAATTTCATTCTAAAGTTCATTCGTCCCA  899

seq1  TAACACACTCAACAAGAAATGGATGGCATG-AGAATCAACCTGTCTGTCT  948
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TAACACACTCAACAAGAAATGGATGGCATGAAGAATCAACCTGT-TGTCT  948