BAC Information

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BAC

Clone NameB6Ng01-042G23
Chromosome18 (Build37)
Map Location 51,099,610 - 51,217,176
singlet/doubletdoublet
Overlap geneLOC100042385
Upstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
Downstream genePrr16, EG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042G23.bB6Ng01-042G23.g
ACCDH868815DH868816
length1,0881,135
definitionDH868815|Mus musculus domesticus DNA, BAC clone: B6Ng01-042G23, 5' end.DH868816|Mus musculus domesticus DNA, BAC clone: B6Ng01-042G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,216,083 - 51,217,176)(51,099,610 - 51,100,751)
sequence
gaattcatgttttactaggcaaatcaaatctagacagtatgagtagctaa
ttcactagtgttttattcattataattttatattttaataatttcattct
gaccctttcttttccaaggatgattttgtgtttttatattattttcctaa
catttatttccttttatttttctctatatttttattataattttcatata
tagcatataccaagatggtattcagtttgaacaacataatgttttatttt
atttgggcaaatagtattgaaatatttggatcttgcagtttggaccattt
tattctcttggttaaaaattttattttcatatatgtttagggcttacttt
tctctttatttcaaatcatcttgtgagttaccccctgatttttaatcata
tgtgcattttttttaaaaaatcaagatttaatgttcatcttttctacaaa
atgttcctatttccttctaggaaaagaattctttccttgagatttaatag
atcctgaagggcaatgcctatatatatggagaatctagaacacatgagat
ggttcagcaggtgaagtcccctgccaccatacttgatcacctgagttcaa
ccccgggaatctccaagcaggagggagaggatcaacccctacaaccttcg
tccatatagcaataaatttacaaacaacagagatagctaagtaattttaa
gtaaagagaatggagaactggccaaaaattgggaagttttctccttggat
tgagttcagagtctaggagcaactttgtactctgtagctcccatctggct
gatgaacttgcactcagtagctgaatgggtaagataacataaactacaat
aaagatatccatcagctgtttccccaatgaccttacagtttgcttcatga
gctcattaaccaagtagacagtagaacaaatggaggtcatatatgggcac
taagacacaaactggcccttgctgaagctgacttttcgtaccaatttctg
cctggtgaactagcaacaatatcttgctcagcccttgtatgggaaataaa
tgagtaacaatcttctttgggcagctagagaccttctt
gaattctttctgtcttttttttcccaaagtagtaaatgacttttgaaagt
tacagtttttaaggataaaatccttttatatttcttttcagcattaaaaa
aacaaaaacaaaaaacaaaacaaaaaacaaaaaaaacaacaaccaaatcc
aaaaccaaaacaaagctgtaaggaacttcctttccagggaatctaacttt
agttacattcatttaattatttataaattcatgtaatttaatttaatttt
aattttaatgtattttacagcaaagacaaaataatagctctaaacacaga
taaagactgaatataaatgggaaagtgaaattgtgatcctgagccatttg
cttttcacagggactggagacagcctgatcttgtaaagagaaaagaaaaa
tgaggatgatttcaaaatgtggtatctgtcccatgaagccttcagagact
tcccatgagagttcagagctgggatttctaacatagttaccactaaacgt
gtgaacatgagtacctgaaatatgtctcaaaattctaaggtatacagttt
agttttatttcatagaaattaactttaattaaacttttaacaggaacatc
cctatctacattttcaagtatgaaattctaaaattatgtacgtagatgtt
tttatgtgtataaattcactccctttaccactatgtgcttaggatgttaa
tcctgattgtaatttgttggaactgagtacaatctaagttattgattact
ggataggtctttcaggatggttcccagaaagataaactgaaggaagagcc
ctcccctgggataaatgggacttttcaggcagcacacatataaagagagc
ctacctcactcccttcctttgagtgcatctcttgcattgtcaatgcctct
gttatcagaacccagcttgtccagctttccagtgcagactagaaaacagt
ggctttccaaaactcatgttttcatccccagttggcactctgaagcatcc
acccctatgatcctgtaagctacaagaatggtggggtggcggcagcctcc
ttgcattcaacagctatattggactctcagtctttactgtggcaagaaaa
tataatggataacctgtttgtatacataaactgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51216083_51217176
seq2: B6Ng01-042G23.b_44_1131 (reverse)

seq1  AAGAAGGGCTCTAGCTGCCACAGGAAGATTTGTTACTCAATTATATTGCC  50
      ||||||| |||||||||||  | ||||| |||||||||| |||| || ||
seq2  AAGAAGGTCTCTAGCTGCCCAAAGAAGA-TTGTTACTCATTTAT-TTCCC  48

seq1  ATACCAAGGGCTTGGAGCAAGATATTGTTGCTAGTTCACCAGGCAGAAAT  100
      ||| ||||||||  ||||||||||||||||||||||||||||||||||||
seq2  ATA-CAAGGGCT--GAGCAAGATATTGTTGCTAGTTCACCAGGCAGAAAT  95

seq1  TGGTACGAAAAGTCAGCTTCAGCAAGGGCCAGTTTGTGTCTTAGTGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACGAAAAGTCAGCTTCAGCAAGGGCCAGTTTGTGTCTTAGTGCCCA  145

seq1  TATATGACCTCCATTTGTTCTACTGTCTACTTGGTTAATGAGCTCATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGACCTCCATTTGTTCTACTGTCTACTTGGTTAATGAGCTCATGAA  195

seq1  GCAAACTGTAAGGTCATTGGGGGAAACAGCTGATGGATATCTTTATTGTA  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAAACTGTAAGGTCATT-GGGGAAACAGCTGATGGATATCTTTATTGTA  244

seq1  GTTTATGTTATCTTACCCATTCAGCTACTGAGTGCAAGTTCATCAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTTATCTTACCCATTCAGCTACTGAGTGCAAGTTCATCAGCCAG  294

seq1  ATGGGAGCTACAGAGTACAAAGTTGCTCCTAGACTCTGAACTCAATCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGCTACAGAGTACAAAGTTGCTCCTAGACTCTGAACTCAATCCAA  344

seq1  GGAGAAAACTTCCCAATTTTTGGCCAGTTCTCCATTCTCTTTACTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAACTTCCCAATTTTTGGCCAGTTCTCCATTCTCTTTACTTAAAA  394

seq1  TTACTTAGCTATCTCTGTTGTTTGTAAATTTATTGCTATATGGACGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGCTATCTCTGTTGTTTGTAAATTTATTGCTATATGGACGAAGG  444

seq1  TTGTAGGGGTTGATCCTCTCCCTCCTGCTTGGAGATTCCCGGGGTTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGGGTTGATCCTCTCCCTCCTGCTTGGAGATTCCCGGGGTTGAAC  494

seq1  TCAGGTGATCAAGTATGGTGGCAGGGGACTTCACCTGCTGAACCATCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGATCAAGTATGGTGGCAGGGGACTTCACCTGCTGAACCATCTCA  544

seq1  TGTGTTCTAGATTCTCCATATATATAGGCATTGCCCTTCAGGATCTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTAGATTCTCCATATATATAGGCATTGCCCTTCAGGATCTATTA  594

seq1  AATCTCAAGGAAAGAATTCTTTTCCTAGAAGGAAATAGGAACATTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAGGAAAGAATTCTTTTCCTAGAAGGAAATAGGAACATTTTGTA  644

seq1  GAAAAGATGAACATTAAATCTTGATTTTTTAAAAAAAATGCACATATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATGAACATTAAATCTTGATTTTTTAAAAAAAATGCACATATGAT  694

seq1  TAAAAATCAGGGGGTAACTCACAAGATGATTTGAAATAAAGAGAAAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCAGGGGGTAACTCACAAGATGATTTGAAATAAAGAGAAAAGTA  744

seq1  AGCCCTAAACATATATGAAAATAAAATTTTTAACCAAGAGAATAAAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAAACATATATGAAAATAAAATTTTTAACCAAGAGAATAAAATGG  794

seq1  TCCAAACTGCAAGATCCAAATATTTCAATACTATTTGCCCAAATAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTGCAAGATCCAAATATTTCAATACTATTTGCCCAAATAAAATA  844

seq1  AAACATTATGTTGTTCAAACTGAATACCATCTTGGTATATGCTATATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTATGTTGTTCAAACTGAATACCATCTTGGTATATGCTATATATG  894

seq1  AAAATTATAATAAAAATATAGAGAAAAATAAAAGGAAATAAATGTTAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAATAAAAATATAGAGAAAAATAAAAGGAAATAAATGTTAGGA  944

seq1  AAATAATATAAAAACACAAAATCATCCTTGGAAAAGAAAGGGTCAGAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATAAAAACACAAAATCATCCTTGGAAAAGAAAGGGTCAGAATG  994

seq1  AAATTATTAAAATATAAAATTATAATGAATAAAACACTAGTGAATTAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTAAAATATAAAATTATAATGAATAAAACACTAGTGAATTAGCT  1044

seq1  ACTCATACTGTCTAGATTTGATTTGCCTAGTAAAACATGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACTGTCTAGATTTGATTTGCCTAGTAAAACATGAATTC  1088

seq1: chr18_51099610_51100751
seq2: B6Ng01-042G23.g_66_1200

seq1  GAATTCTTTCTGTCTTTTTTTTCCCAAAGTAGTAAATGACTTTTGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTCTTTTTTTTCCCAAAGTAGTAAATGACTTTTGAAAGT  50

seq1  TACAGTTTTTAAGGATAAAATCCTTTTATATTTCTTTTCAGCATTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTTTAAGGATAAAATCCTTTTATATTTCTTTTCAGCATTAAAAA  100

seq1  AACAAAAACAAAAAACAAAACAAAAAACAAAAAAAACAACAACCAAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAAACAAAACAAAAAACAAAAAAAACAACAACCAAATCC  150

seq1  AAAACCAAAACAAAGCTGTAAGGAACTTCCTTTCCAGGGAATCTAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAACAAAGCTGTAAGGAACTTCCTTTCCAGGGAATCTAACTTT  200

seq1  AGTTACATTCATTTAATTATTTATAAATTCATGTAATTTAATTTAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATTCATTTAATTATTTATAAATTCATGTAATTTAATTTAATTTT  250

seq1  AATTTTAATGTATTTTACAGCAAAGACAAAATAATAGCTCTAAACACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATGTATTTTACAGCAAAGACAAAATAATAGCTCTAAACACAGA  300

seq1  TAAAGACTGAATATAAATGGGAAAGTGAAATTGTGATCCTGAGCCATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTGAATATAAATGGGAAAGTGAAATTGTGATCCTGAGCCATTTG  350

seq1  CTTTTCACAGGGACTGGAGACAGCCTGATCTTGTAAAGAGAAAAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACAGGGACTGGAGACAGCCTGATCTTGTAAAGAGAAAAGAAAAA  400

seq1  TGAGGATGATTTCAAAATGTGGTATCTGTCCCATGAAGCCTTCAGAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGATTTCAAAATGTGGTATCTGTCCCATGAAGCCTTCAGAGACT  450

seq1  TCCCATGAGAGTTCAGAGCTGGGATTTCTAACATAGTTACCACTAAACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGAGAGTTCAGAGCTGGGATTTCTAACATAGTTACCACTAAACGT  500

seq1  GTGAACATGAGTACCTGAAATATGTCTCAAAATTCTAAGGTATACAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATGAGTACCTGAAATATGTCTCAAAATTCTAAGGTATACAGTTT  550

seq1  AGTTTTATTTCATAGAAATTAACTTTAATTAAACTTTTAACAGGAACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTTCATAGAAATTAACTTTAATTAAACTTTTAACAGGAACATC  600

seq1  CCTATCTACATTTTCAAGTATGAAATTCTAAAATTATGTACGTAGATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTACATTTTCAAGTATGAAATTCTAAAATTATGTACGTAGATGTT  650

seq1  TTTATGTGTATAAATTCACTCCCTTTACCACTATGTGCTTAGGATGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTATAAATTCACTCCCTTTACCACTATGTGCTTAGGATGTTAA  700

seq1  TCCTGATTGTAATTTGTTGGAACTGAGTACAATCTAAGTTATTGATTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTGTAATTTGTTGGAACTGAGTACAATCTAAGTTATTGATTACT  750

seq1  GGATAGGTCTTTCAGGATGGTTCCCAGAAAGATAAACTGAAGGAAGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGTCTTTCAGGATGGTTCCCAGAAAGATAAACTGAAGGAAGAGCC  800

seq1  CTCCCCTGGGATAAATGGGACTTTTCAGGGCAGCACACATATAAAGAGAG  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCCCCTGGGATAAATGGGACTTTTCA-GGCAGCACACATATAAAGAGAG  849

seq1  CCTACCTCACTCCCTTCCTTTGAGTGCATCTCTTGCATTGTCAATGCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCACTCCCTTCCTTTGAGTGCATCTCTTGCATTGTCAATGCCTC  899

seq1  TGTTATCAGAACCCAGCTTGTCCAGCTTTCCAGTGCAGACTAGAAAACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCAGAACCCAGCTTGTCCAGCTTTCCAGTGCAGACTAGAAAACAG  949

seq1  TGGCTTTCCAAAACTCATGTTTTCATCCCCAGGTTGGCACTCCTGAGGCA  1000
      ||||||||||||||||||||||||||||||| ||||||||| |||| |||
seq2  TGGCTTTCCAAAACTCATGTTTTCATCCCCA-GTTGGCACT-CTGAAGCA  997

seq1  TCCACCCTTATGATCCTGTAAGCTACAAGGATGGTGGGGTG--CGCAGCC  1048
      ||||||| ||||||||||||||||||||| |||||||||||   ||||||
seq2  TCCACCCCTATGATCCTGTAAGCTACAAGAATGGTGGGGTGGCGGCAGCC  1047

seq1  TCCTTGCATTCAAACAGCTACTATTGGACTTCCCAGTCTTTACTGT-GCA  1097
      ||||||||||| |||||||| |||||||| || ||||||||||||| |||
seq2  TCCTTGCATTC-AACAGCTA-TATTGGAC-TCTCAGTCTTTACTGTGGCA  1094

seq1  AGAAAATATAATGAATAACCTTTGTTTTGTATTCATAATACTGTT  1142
      ||||||||||||| |||||||    ||||||| ||||| ||||||
seq2  AGAAAATATAATGGATAACCT---GTTTGTATACATAA-ACTGTT  1135