BAC Information

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BAC

Clone NameB6Ng01-042J12
Chromosome18 (Build37)
Map Location 70,087,407 - 70,205,796
singlet/doubletdoublet
Overlap geneCcdc68, Rab27b
Upstream geneLOC100043380, EG225681, Tcf4
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042J12.bB6Ng01-042J12.g
ACCDH868920DH868921
length686799
definitionDH868920|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J12, 5' end.DH868921|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,087,407 - 70,088,095)(70,204,998 - 70,205,796)
sequence
gaattctttgcaaacgtgttggacagcatggttgtcaccgtagtacagtg
tccgattaggtcactgtccctaaatgactgcagtctcattgtccccctct
tcaggcccaggtgactctcatccaccttatgtgtcttcaactttaccttt
tctggacatttcaagctaatggaatcaaacaatgtttgttccttaacatt
tggtttcttttacatagaatacagattttgaggcacattcaggctgtagc
atgtatctgtgttttgctctgttttatggtcaaccaacatctattccatt
tgatgggattgcttttaatatattattacacacacacacacacacacaca
cacacacacacacacacatgcatacactccatacatacaacatatacaca
tatatagtgtaaaatatataatatgcattatatagtgtgtgtaataatat
atatagtatataataatatatattgtatatgtgtgtggttggggggggag
gagtgagggggtgagtgggtgtgtgagtgggtgggggaggctagaaacag
acacaggaattaccccctgccactctccatctcacatatatcaaggcaga
gtattgcacttgaacacagaacttataaatcagctagtctagctattgct
aacttcttggatgccctgttctaccaactgtgcact
gaattcattccattaattatgaagagtgtagggaaaagtttcttgtccag
ggtgtttggtccttcagtgggtagaatcttaacagcctgcagatgtggct
ctctctgcagaagccctgggctgtgtgtttcctgtgtcactgaatctggt
ggtgtggtttctctgtgaaagaccacaggatagcaactgagtggctccaa
agagaactctcgctctgctataatgttctctctggctcccaacagtggtt
tcaattaatgtatctcaaggctcggcctcttggaaacccctatcctttta
aagtcctctttatcccttaagtagagctgtggatgagaccagggaagcag
ttcccagaagggcctgggttagagttactgtcgtgaaatgcagtctgtag
gtttggcctaagtaggctagagaactaaggtgggttctcaggtcaatcca
gaagacattcacataactaaggatatcaacttttcacttggagaataata
aaaaatgaaaattctagagtcattcaaacttatatatatgttgagttcaa
atagcccttgactcagtttcctattttacctcccactatgttttccctgc
ataactttgggtatttcatttaccttaaataccaaggcacttatttgtaa
aatgttggctagttgcgaatacctaggatacactttcttacaatatagat
agatactcaatagactagctggcttgcaacaaccaaatggatcataaatc
tttctattaacaacttggagaactctctctctctctccccccccccgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70087407_70088095
seq2: B6Ng01-042J12.b_42_727

seq1  GAATTCTTTGCAAACGTGTTGGACAGCATGGTTGTCACCGTAGTACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAAACGTGTTGGACAGCATGGTTGTCACCGTAGTACAGTG  50

seq1  TCCGATTAGGTCACTGTCCCTAAATGACTGCAGTCTCATTGTCCCCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATTAGGTCACTGTCCCTAAATGACTGCAGTCTCATTGTCCCCCTCT  100

seq1  TCAGGCCCAGGTGACTCTCATCCACCTTATGTGTCTTCAACTTTACCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCCAGGTGACTCTCATCCACCTTATGTGTCTTCAACTTTACCTTT  150

seq1  TCTGGACATTTCAAGCTAATGGAATCAAACAATGTTTGTTCCTTAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACATTTCAAGCTAATGGAATCAAACAATGTTTGTTCCTTAACATT  200

seq1  TGGTTTCTTTTACATAGAATACAGATTTTGAGGCACATTCAGGCTGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTTTACATAGAATACAGATTTTGAGGCACATTCAGGCTGTAGC  250

seq1  ATGTATCTGTGTTTTGCTCTGTTTTATGGTCAACCAACATCTATTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTGTGTTTTGCTCTGTTTTATGGTCAACCAACATCTATTCCATT  300

seq1  TGATGGGATTGCTTTTAATATATTATTACACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGATTGCTTTTAATATATTATTACACACACACACACACACACACA  350

seq1  CACACACACACACACACATGCATACACTCCATACATACAACATATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATGCATACACTCCATACATACAACATATACACA  400

seq1  TATATAGTGTAAAATATATAATATGCATTATATAGTGTGTGTAATAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTGTAAAATATATAATATGCATTATATAGTGTGTGTAATAATAT  450

seq1  ATATAGTATATAATAATATATATTGTATATGTGTGTGTTT---GTCTGTG  497
      ||||||||||||||||||||||||||||||||||||| ||   |   | |
seq2  ATATAGTATATAATAATATATATTGTATATGTGTGTGGTTGGGGGGGGAG  500

seq1  GTGTATGCATGTGTTTACATGTATGAGCACATGTGT-GTGGAGGCTAGAG  546
      | ||  |   |||  |   ||| ||||    || || | |||||||||| 
seq2  GAGTGAGGGGGTGAGTGGGTGTGTGAG----TGGGTGGGGGAGGCTAGAA  546

seq1  ACTGACACAGGAATTACTCCCTGCCACTCTCCATCTCACATATATCAAGG  596
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAGACACAGGAATTACCCCCTGCCACTCTCCATCTCACATATATCAAGG  596

seq1  CAGAGTATTGCACTTGAACACAGAACTTGATAAATCAGCTAGTCCAGCTA  646
      |||||||||||||||||||||||||||| ||||||||||||||| |||| 
seq2  CAGAGTATTGCACTTGAACACAGAACTT-ATAAATCAGCTAGTCTAGCT-  644

seq1  ACTGCTAGCTGCAGGGATGCCCTGTCCGTACCACCTGTGCACT  689
      | ||||| || |  ||||||||||| | ||||| |||||||||
seq2  ATTGCTAACTTCTTGGATGCCCTGTTC-TACCAACTGTGCACT  686

seq1: chr18_70204998_70205796
seq2: B6Ng01-042J12.g_66_864 (reverse)

seq1  GGCGGGGGGGGGGAGAGAGAGAGAGAGTTCTCCAAGTTGTTAATAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGGGGGGGAGAGAGAGAGAGAGTTCTCCAAGTTGTTAATAGAAAG  50

seq1  ATTTATGATCCATTTGGTTGTTGCAAGCCAGCTAGTCTATTGAGTATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGATCCATTTGGTTGTTGCAAGCCAGCTAGTCTATTGAGTATCTA  100

seq1  TCTATATTGTAAGAAAGTGTATCCTAGGTATTCGCAACTAGCCAACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTGTAAGAAAGTGTATCCTAGGTATTCGCAACTAGCCAACATTT  150

seq1  TACAAATAAGTGCCTTGGTATTTAAGGTAAATGAAATACCCAAAGTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAAGTGCCTTGGTATTTAAGGTAAATGAAATACCCAAAGTTATG  200

seq1  CAGGGAAAACATAGTGGGAGGTAAAATAGGAAACTGAGTCAAGGGCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAACATAGTGGGAGGTAAAATAGGAAACTGAGTCAAGGGCTATT  250

seq1  TGAACTCAACATATATATAAGTTTGAATGACTCTAGAATTTTCATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAACATATATATAAGTTTGAATGACTCTAGAATTTTCATTTTTT  300

seq1  ATTATTCTCCAAGTGAAAAGTTGATATCCTTAGTTATGTGAATGTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTCCAAGTGAAAAGTTGATATCCTTAGTTATGTGAATGTCTTCT  350

seq1  GGATTGACCTGAGAACCCACCTTAGTTCTCTAGCCTACTTAGGCCAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGACCTGAGAACCCACCTTAGTTCTCTAGCCTACTTAGGCCAAACC  400

seq1  TACAGACTGCATTTCACGACAGTAACTCTAACCCAGGCCCTTCTGGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACTGCATTTCACGACAGTAACTCTAACCCAGGCCCTTCTGGGAAC  450

seq1  TGCTTCCCTGGTCTCATCCACAGCTCTACTTAAGGGATAAAGAGGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCTGGTCTCATCCACAGCTCTACTTAAGGGATAAAGAGGACTTT  500

seq1  AAAAGGATAGGGGTTTCCAAGAGGCCGAGCCTTGAGATACATTAATTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATAGGGGTTTCCAAGAGGCCGAGCCTTGAGATACATTAATTGAA  550

seq1  ACCACTGTTGGGAGCCAGAGAGAACATTATAGCAGAGCGAGAGTTCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTTGGGAGCCAGAGAGAACATTATAGCAGAGCGAGAGTTCTCTT  600

seq1  TGGAGCCACTCAGTTGCTATCCTGTGGTCTTTCACAGAGAAACCACACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCACTCAGTTGCTATCCTGTGGTCTTTCACAGAGAAACCACACCA  650

seq1  CCAGATTCAGTGACACAGGAAACACACAGCCCAGGGCTTCTGCAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCAGTGACACAGGAAACACACAGCCCAGGGCTTCTGCAGAGAGA  700

seq1  GCCACATCTGCAGGCTGTTAAGATTCTACCCACTGAAGGACCAAACACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATCTGCAGGCTGTTAAGATTCTACCCACTGAAGGACCAAACACCC  750

seq1  TGGACAAGAAACTTTTCCCTACACTCTTCATAATTAATGGAATGAATTC  799
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGAAACTTTTCCCTACACTCTTCATAATTAATGGAATGAATTC  799