BAC Information

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BAC

Clone NameB6Ng01-042K17
Chromosome18 (Build37)
Map Location 89,880,816 - 89,881,921
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042K17.bB6Ng01-042K17.g
ACCDH868972DH868973
length1,1441,235
definitionDH868972|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K17, 5' end.DH868973|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaaaattatatctgtgattattaagctcttttataatgggact
gctattagatcattttctgatagtcaaagctacaatgagaactctgtcag
tcttccaagtgtcatcagttaattgctcttagatggtaactagactttct
cctacccagagcacactccaagaagttgtaaaacaattaaccaaaggtca
ttaaaaggcagctaacgatttattgtaggtgctaggacagaagataaaat
attgactgggttttctctatacaaaacttcactaataagttagttatggt
tttacaccttcagtgaatatgtggagctcagacagatgatggatgtttag
ccagataattactcctaatggatatgcatgtaaacatttgtgttgtaaac
ttctatttcagtttatgatttgatttttttttgtgtgaacttgtgatgaa
ctttgtaatatgtgatcatgtattctgaaaggtgtataagtactgaggac
aaagaggacgagaatcatcaagagagctaagatcgatagaggagactctt
ttgcctttccccatttagactagattcttttccctttcgccacttagaga
atttttccctttacccacttaggatctttctgcttttctccttaggttgc
tttcataggaaacttttttcaacttggtaataaactctataatcactttt
ctaagtgttttctattcctgcaacatcagatagcaggctgaaagttagag
cccagcagatactgctgagatagaacaaaggctgcattgcttaatcctct
gctgttaggctacaggtgttaaatcctcttttagcctcagaaagagaaag
aaagtttttaggactttttagaagttatcatcagcatttcagtataatta
gagagctagaaagcccccataccctcagactttaaagccatcaccagagt
cctactcctcaattccccactaccctggcccaatctgggaggcccctggc
agacatggaaacctcaactgaagggaaagaggcctgaagaacaggcacca
gtgttcaagacccactattcctcagtcagttccataaaaaatactaagtt
aaagcaataataatggccggacctggcatagtccatgtagccct
gaattctttacagaatgaaataaagtttttactggaataagatggcccat
tgtctgtcttaataagtttaggcaatcccatggcattaaatgcttgtagg
caatgatcaattacgttttttgaagcttctcctgtatgtagagaagcaaa
aagaaatcctgaacaagtatcaatgtaaacatgtatatattttagttttc
caaattttgcataatgggttatatctatttgccaaatatgattaggcata
aggcctctaggattaactcctagatgcggcactggagataaagtaataca
tttaggacattgttttacaatcattctctcttgctcctttgtgatcttat
gtcggagccttagggtatggctagagagatgaaaccttttatgatcacgt
tgggccaaagcaacccgatctgaaactaaggcttctcctattagagctct
gtcaatgcgatcattaccctctgccagaggtccaggaagaccagagtgag
accgtatgtggccaatataaaacggatttttccgggcgagaatgatgttt
tgtaattctgaaaataaagatcctgacggcatattgaagttaaacgtacc
acaggtttctaataagggtactgactgagcaacatataaactgtcagtaa
aaatattaaaagcctcatgtacagactgaaaaaccttcagtactgctgtt
aattcggcgagctgagccgagagaccaggagtctctacgataacctgttg
attactaataagatatctagctcgccctctagaggagccatcagtaaaaa
tcaatagagcattatttaaaggctgtaaggaagtcatcttaggaatacca
tatcatgtacatttaagaatttatcaacctatcttgggggtagtggctat
ctatagttcctttaaaccctaattgtgcaagcaaccaatctgtactatgc
tgtttagccaagtgtctgactcccgctgtaagctggacaatgaaatcttg
gctctttctaaaataagtcaatgcctgtcttcttagtgataatcatctga
gccactgccttcgtgatatggcaagaattttcgtttgggagaaatttctc
gaatttattccatatagatttgcctaagcattccgtagcccatggtcgat
aaataacgtgcaccgccggaatcttgagtgcaacgttattgccttcatac
gttaggcaagagatcctccgagtttagggactaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89880816_89881921
seq2: B6Ng01-042K17.b_85_1184

seq1  GGGACTGCTATTAGATCATTTTCTGATAGTCAAAGCTACAATGAGAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGCTATTAGATCATTTTCTGATAGTCAAAGCTACAATGAGAACTC  50

seq1  TGTCAGTCTTCCAAGTGTCATCAGTTAATTGCTCTTAGATGGTAACTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCTTCCAAGTGTCATCAGTTAATTGCTCTTAGATGGTAACTAGA  100

seq1  CTTTCTCCTACCCAGAGCACACTCCAAGAAGTTGTAAAACAATTAACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTACCCAGAGCACACTCCAAGAAGTTGTAAAACAATTAACCAA  150

seq1  AGGTCATTAAAAGGCAGCTAACGATTTATTGTAGGTGCTAGGACAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTAAAAGGCAGCTAACGATTTATTGTAGGTGCTAGGACAGAAGA  200

seq1  TAAAATATTGACTGGGTTTTCTCTATACAAAACTTCACTAATAAGTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTGACTGGGTTTTCTCTATACAAAACTTCACTAATAAGTTAGT  250

seq1  TATGGTTTTACACCTTCAGTGAATATGTGGAGCTCAGACAGATGATGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTACACCTTCAGTGAATATGTGGAGCTCAGACAGATGATGGAT  300

seq1  GTTTAGCCAGATAATTACTCCTAATGGATATGCATGTAAACATTTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCCAGATAATTACTCCTAATGGATATGCATGTAAACATTTGTGTT  350

seq1  GTAAACTTCTATTTCAGTTTATGATTTGATTTTTTTTTGTGTGAACTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTCTATTTCAGTTTATGATTTGATTTTTTTTTGTGTGAACTTGT  400

seq1  GATGAACTTTGTAATATGTGATCATGTATTCTGAAAGGTGTATAAGTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTTTGTAATATGTGATCATGTATTCTGAAAGGTGTATAAGTACT  450

seq1  GAGGACAAAGAGGACGAGAATCATCAAGAGAGCTAAGATCGATAGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAAGAGGACGAGAATCATCAAGAGAGCTAAGATCGATAGAGGAG  500

seq1  ACTCTTTTGCCTTTCCCCATTTAGACTAGATTCTTTTCCCTTTCGCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTGCCTTTCCCCATTTAGACTAGATTCTTTTCCCTTTCGCCACT  550

seq1  TAGAGAATTTTTCCCTTTACCCACTTAGGATCTTTCTGCTTTTCTCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATTTTTCCCTTTACCCACTTAGGATCTTTCTGCTTTTCTCCTTA  600

seq1  GGTTGCTTTCATAGGAAACTTTTTTCAACTTGGTAATAAACTCTATAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTTCATAGGAAACTTTTTTCAACTTGGTAATAAACTCTATAATC  650

seq1  ACTTTTCTAAGTGTTTTCTATTCCTGCAACATCAGATAGCAGGCTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTAAGTGTTTTCTATTCCTGCAACATCAGATAGCAGGCTGAAAG  700

seq1  TTAGAGCCCAGCAGATACTGCTGAGATAGAACAAAGGCTGCATTGCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCCAGCAGATACTGCTGAGATAGAACAAAGGCTGCATTGCTTAA  750

seq1  TCCTCTGCTGTTAGGCTACAGGTGTTAAATCCTCTTTTAGCCTCAGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCTGTTAGGCTACAGGTGTTAAATCCTCTTTTAGCCTCAGAAAG  800

seq1  AGAAAGAAAGTTTTTAGGACTTTTTAGAAGTTATCATCAGCATTTCAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGTTTTTAGGACTTTTTAGAAGTTATCATCAGCATTTCAGTA  850

seq1  TAATTAGAGAGCTAGAAAGCCCCCATACCCTCAGACTTTAAAGCCATCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGAGAGCTAGAAAGCCCCCATACCCTCAGACTTTAAAGCCATCAC  900

seq1  CAGAGTCCTACT-CTCAATTCACCACTACCCTGGCCCAATCTGGGAGGCT  949
      |||||||||||| |||||||| ||||||||||||||||||||||||||| 
seq2  CAGAGTCCTACTCCTCAATTCCCCACTACCCTGGCCCAATCTGGGAGGCC  950

seq1  CCTGGCAGACATGGAAA-CTCAACTGAAGGGAAAGAGGCCTG-AGAACAG  997
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  CCTGGCAGACATGGAAACCTCAACTGAAGGGAAAGAGGCCTGAAGAACAG  1000

seq1  GCACAAGTGTCAAAGACCCACTAATTCTCAGTCAGGGTTTCCAT-AAAAA  1046
      |||| |||||  ||||||||||| | |||||||||   |||||| |||||
seq2  GCACCAGTGTTCAAGACCCACTATTCCTCAGTCAG---TTCCATAAAAAA  1047

seq1  TACTAAGTTAAAAGCAATAATATATGTGCAGGGGACCTGGTATAGTTCCA  1096
      ||||||||| |||||||||||| |||  |   |||||||| |||| ||||
seq2  TACTAAGTT-AAAGCAATAATA-ATGGCC---GGACCTGGCATAG-TCCA  1091

seq1  TGTAGGCCCT  1106
      |||| |||||
seq2  TGTA-GCCCT  1100