BAC Information

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BAC

Clone NameB6Ng01-044O24
Chromosome18 (Build37)
Map Location 52,266,616 - 52,381,637
singlet/doubletdoublet
Overlap genenone
Upstream genePrr16, EG240289
Downstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044O24.bB6Ng01-044O24.g
ACCDH870545DH870546
length1,1141,069
definitionDH870545|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O24, 5' end.DH870546|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,380,518 - 52,381,637)(52,266,616 - 52,267,684)
sequence
gaattcctaatctctcccaattcttttaacacatgtgcacgagtattttc
cctgcatgtatgtctgtgcactatatacatacagtgcccatattagccag
aggaggtcatcggatcccctgctactgttgttagtacagattgttctaaa
gaccaatggtacaaattctttgagaaataacttattagtacatctgttct
ttgatagtttcagtgacatatagcgcattcttatactctgaacacccaag
ccccctttatagccctttctgcttttctttcacttctatctttttgtttt
atttcatggctcaccaggtttaaccagaaccattggtgtgaccacagatt
tggagatatcctttggagttcttagggtcagcaattgtggtgtaaataaa
gatagtatgagcctttccctcgcaatctattagttcgatatggtcctgtg
ctcccttttctcagtggtaatcaattcccgacaggcctaggcttatgccg
gctcagtgtaggcagctgaggccattgtgcaataatgactacagtattct
ttccaggccctgaggatagacctcacagctcttctttccatcttctggct
cttacattctttccatcctcttgtcctcgatgttctctaacccctagaac
tttcaatataattcttcagttcaggtcagagcactcaactgtcacttatt
cagcagcttgcacagccatgtgtttactggtagccattgcaagggcaagc
ttctctaacaaaggctgagagtagaatttgtctttggaaacaagcatagt
cttatagaggggatttcagtgccatcaaaaattctttgggctttgatgag
gaatttttagaattttaacaccagataagtggcttatactattacaaatt
aattttcttttagaggaaagaatgacaatgaacaaatagatgtctttcac
actatttgatgaattcatgagaatattgggggagtgtctttgaagaacca
atacctaaatatgtacaattgtgtcttgtggcttcatagacatccttttt
ggacaccaaatctataatttctctttggcttacttgtttcttggttctgt
gggagttcagctgc
gaattcagaagcagttacaatggccctagagctttttgttgggaagcttt
ttattcctccttcaatctcattgctgcggacaattacaaagcttatgtca
tgaactttgtagatcatgggttaagtgaatttatgcatttcgtctaggta
tttcagacttggaggatatacattttcaaaatactccctaatgattctct
agatttcactctgttctgtaacaacctcaacctttttttctctctaatgc
ccttaattttgattctttctttttcttttgttcctttgacttcaggccct
ccgtgtagtgtatctttgttttcctaatagattccttttcaagatggcag
cagaccactatcttctaaatcatatagcttgacaacatcagattattccc
ctctgctgaaccttccactgcaagaataactacccaaccaaaatctgact
ctggttagaatccttgtgagaactgaagtcttgtcctaaagtatgagacc
acctgactcctctggcttatcttttggaaggaactccccagttccctctc
tcgccagggaccagcataggatgtgatgggcctctccttctgtgttgtgc
catttctttcctactattcttattctggcaacctttcacttctgtagtgg
gttcctgaagcttttctcctattcctctctgcaccagtacaatattatga
gaatacatcttacattcaaaatgactggatcttttgctggaccttactgc
tgagttaataatgcatgttggggtcactctaagacttaagaccgatgttt
ttatgtgtagttggtcatttgtttagcatgtctttaagagaacagtagaa
tcagcaaccatactcgccttgggatgcctcatggaaccaatttataaaac
ctaaactaaggcctagttttaatcttaagtgtatattcatctctgccctc
cacacatgggcaatgcatttgtgtatgtgtgtgtggtatgtagatatata
ttatagtactgggaaaaagaaattgttgacagcaaaccttatctatagat
ttccccattatttgcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52380518_52381637
seq2: B6Ng01-044O24.b_43_1156 (reverse)

seq1  GCAGCTGAACCTCCACAGAACCAAGAAACAAGTAAGCC-AAGAGAATTTA  49
      ||||||||||  |||||||||||||||||||||||||| ||||||| |||
seq2  GCAGCTGAACTCCCACAGAACCAAGAAACAAGTAAGCCAAAGAGAAATTA  50

seq1  TGGATTTTGGTGTCCAAAAAGGATGTCTATGAAGCCACAAGACACAATTG  99
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGA-TTTGGTGTCCAAAAAGGATGTCTATGAAGCCACAAGACACAATTG  99

seq1  TTACATATTTTAAGTATTGGTTTCTTCAAAGACACT-CCCCAATATTCTC  148
       |||||| |||| ||||||| ||||||||||||||| |||||||||||||
seq2  -TACATA-TTTAGGTATTGG-TTCTTCAAAGACACTCCCCCAATATTCTC  146

seq1  ATGAATTTCATCAAATAGTGTTGAAAGACATCTATTTGTTCATTGTCATT  198
      ||||| |||||||||||||| ||||||||||||||||||||||||||| |
seq2  ATGAA-TTCATCAAATAGTG-TGAAAGACATCTATTTGTTCATTGTCA-T  193

seq1  TCTTTCCTCTAAAAGAAAATTAATTTGTAATAGTATAAGCCACTTATCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCTAAAAGAAAATTAATTTGTAATAGTATAAGCCACTTATCTG  243

seq1  GTGTTAAAATTCTAAAAATTCCTCATCAAAAGCCCAAAGAATTTTTGATG  298
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGTTAAAATTCTAAAAATTCCTCATC-AAAGCCCAAAGAATTTTTGATG  292

seq1  GCACTGAAATCCCCTCTATAAGACTATGCTTGTTTCCAAAGACAAATTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAAATCCCCTCTATAAGACTATGCTTGTTTCCAAAGACAAATTCT  342

seq1  ACTCTCAGCCTTTGTTAGAGAAGCTTGCCCTTGCAATGGCTACCAGTAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGCCTTTGTTAGAGAAGCTTGCCCTTGCAATGGCTACCAGTAAA  392

seq1  CACATGGCTGTGCAAGCTGCTGAATAAGTGACAGTTGAGTGCTCTGACCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCTGTGCAAGCTGCTGAATAAGTGACAGTTGAGTGCTCTGACCT  442

seq1  GAACTGAAGAATTATATTGAAAGTTCTAGGGGTTAGAGAACATCGAGGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAGAATTATATTGAAAGTTCTAGGGGTTAGAGAACATCGAGGAC  492

seq1  AAGAGGATGGAAAGAATGTAAGAGCCAGAAGATGGAAAGAAGAGCTGTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATGGAAAGAATGTAAGAGCCAGAAGATGGAAAGAAGAGCTGTGA  542

seq1  GGTCTATCCTCAGGGCCTGGAAAGAATACTGTAGTCATTATTGCACAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATCCTCAGGGCCTGGAAAGAATACTGTAGTCATTATTGCACAATG  592

seq1  GCCTCAGCTGCCTACACTGAGCCGGCATAAGCCTAGGCCTGTCGGGAATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTGCCTACACTGAGCCGGCATAAGCCTAGGCCTGTCGGGAATT  642

seq1  GATTACCACTGAGAAAAGGGAGCACAGGACCATATCGAACTAATAGATTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACCACTGAGAAAAGGGAGCACAGGACCATATCGAACTAATAGATTG  692

seq1  CGAGGGAAAGGCTCATACTATCTTTATTTACACCACAATTGCTGACCCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGAAAGGCTCATACTATCTTTATTTACACCACAATTGCTGACCCTA  742

seq1  AGAACTCCAAAGGATATCTCCAAATCTGTGGTCACACCAATGGTTCTGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCCAAAGGATATCTCCAAATCTGTGGTCACACCAATGGTTCTGGT  792

seq1  TAAACCTGGTGAGCCATGAAATAAAACAAAAAGATAGAAGTGAAAGAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGGTGAGCCATGAAATAAAACAAAAAGATAGAAGTGAAAGAAAA  842

seq1  GCAGAAAGGGCTATAAAGGGGGCTTGGGTGTTCAGAGTATAAGAATGCGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGGGCTATAAAGGGGGCTTGGGTGTTCAGAGTATAAGAATGCGC  892

seq1  TATATGTCACTGAAACTATCAAAGAACAGATGTACTAATAAGTTATTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTCACTGAAACTATCAAAGAACAGATGTACTAATAAGTTATTTCT  942

seq1  CAAAGAATTTGTACCATTGGTCTTTAGAACAATCTGTACTAACAACAGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATTTGTACCATTGGTCTTTAGAACAATCTGTACTAACAACAGTA  992

seq1  GCAGGGGATCCGATGACCTCCTCTGGCTAATATGGGCACTGTATGTATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGATCCGATGACCTCCTCTGGCTAATATGGGCACTGTATGTATAT  1042

seq1  AGTGCACAGACATACATGCAGGGAAAATACTCGTGCACATGTGTTAAAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACAGACATACATGCAGGGAAAATACTCGTGCACATGTGTTAAAAG  1092

seq1  AATTGGGAGAGATTAGGAATTC  1120
      ||||||||||||||||||||||
seq2  AATTGGGAGAGATTAGGAATTC  1114

seq1: chr18_52266616_52267684
seq2: B6Ng01-044O24.g_66_1134

seq1  GAATTCAGAAGCAGTTACAATGGCCCTAGAGCTTTTTGTTGGGAAGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGCAGTTACAATGGCCCTAGAGCTTTTTGTTGGGAAGCTTT  50

seq1  TTATTCCTCCTTCAATCTCATTGCTGCGGACAATTACAAAGCTTATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTCCTTCAATCTCATTGCTGCGGACAATTACAAAGCTTATGTCA  100

seq1  TGAACTTTGTAGATCATGGGTTAAGTGAATTTATGCATTTCGTCTAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGTAGATCATGGGTTAAGTGAATTTATGCATTTCGTCTAGGTA  150

seq1  TTTCAGACTTGGAGGATATACATTTTCAAAATACTCCCTAATGATTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTTGGAGGATATACATTTTCAAAATACTCCCTAATGATTCTCT  200

seq1  AGATTTCACTCTGTTCTGTAACAACCTCAACCTTTTTTTCTCTCTAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCACTCTGTTCTGTAACAACCTCAACCTTTTTTTCTCTCTAATGC  250

seq1  CCTTAATTTTGATTCTTTCTTTTTCTTTTGTTCCTTTGACTTCAGGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTTTGATTCTTTCTTTTTCTTTTGTTCCTTTGACTTCAGGCCCT  300

seq1  CCGTGTAGTGTATCTTTGTTTTCCTAATAGATTCCTTTTCAAGATGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTAGTGTATCTTTGTTTTCCTAATAGATTCCTTTTCAAGATGGCAG  350

seq1  CAGACCACTATCTTCTAAATCATATAGCTTGACAACATCAGATTATTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCACTATCTTCTAAATCATATAGCTTGACAACATCAGATTATTCCC  400

seq1  CTCTGCTGAACCTTCCACTGCAAGAATAACTACCCAACCAAAATCTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGAACCTTCCACTGCAAGAATAACTACCCAACCAAAATCTGACT  450

seq1  CTGGTTAGAATCCTTGTGAGAACTGAAGTCTTGTCCTAAAGTATGAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAGAATCCTTGTGAGAACTGAAGTCTTGTCCTAAAGTATGAGACC  500

seq1  ACCTGACTCCTCTGGCTTATCTTTTGGAAGGAACTCCCCAGTTCCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTCCTCTGGCTTATCTTTTGGAAGGAACTCCCCAGTTCCCTCTC  550

seq1  TCGCCAGGGACCAGCATAGGATGTGATGGGCCTCTCCTTCTGTGTTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCAGGGACCAGCATAGGATGTGATGGGCCTCTCCTTCTGTGTTGTGC  600

seq1  CATTTCTTTCCTACTATTCTTATTCTGGCAACCTTTCACTTCTGTAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTCCTACTATTCTTATTCTGGCAACCTTTCACTTCTGTAGTGG  650

seq1  GTTCCTGAAGCTTTTCTCCTATTCCTCTCTGCACCAGTACAATATTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGAAGCTTTTCTCCTATTCCTCTCTGCACCAGTACAATATTATGA  700

seq1  GAATACATCTTACATTCAAAATGACTGGATCTTTTGCTGGACCTTACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATCTTACATTCAAAATGACTGGATCTTTTGCTGGACCTTACTGC  750

seq1  TGAGTTAATAATGCATGTTGGGGTCACTCTAAGACTTAAGACCGATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAATAATGCATGTTGGGGTCACTCTAAGACTTAAGACCGATGTTT  800

seq1  TTATGTGTAGTTGGTCATTTGTTTAGCATGTCTTTAAGAGAACAGTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTAGTTGGTCATTTGTTTAGCATGTCTTTAAGAGAACAGTAGAA  850

seq1  TCAGCAACCATACTCGCCTT-GGATGCCTCATGGAACCAATTTATAAAAC  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAGCAACCATACTCGCCTTGGGATGCCTCATGGAACCAATTTATAAAAC  900

seq1  CTAAACTAAGGCCTAGTTTTAATCTTAAGTTGTATATTCATCTCTGCCCT  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTAAACTAAGGCCTAGTTTTAATCTTAAG-TGTATATTCATCTCTGCCCT  949

seq1  -CACACATGGGCAATGCATTTGTGTATGTGTGTGT-GTATGTAGATATAT  997
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCACACATGGGCAATGCATTTGTGTATGTGTGTGTGGTATGTAGATATAT  999

seq1  A-TATAGTACTGGAAAAAAGAAAATATGTTGACAGCAAACCTTATCTAAT  1046
      | ||||||||||| |||||||||   ||||||||||||||||||||| ||
seq2  ATTATAGTACTGGGAAAAAGAAA--TTGTTGACAGCAAACCTTATCT-AT  1046

seq1  AGATATCCCCCATTA-TTGCAGGA  1069
      |||| | |||||||| ||||||||
seq2  AGAT-TTCCCCATTATTTGCAGGA  1069