BAC Information

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BAC

Clone NameB6Ng01-045E20
Chromosome18 (Build37)
Map Location 19,655,816 - 19,656,949
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658, LOC665624
Downstream geneLOC665629, Dsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045E20.bB6Ng01-045E20.g
ACCDH870796DH870797
length1,1171,206
definitionDH870796|Mus musculus domesticus DNA, BAC clone: B6Ng01-045E20, 5' end.DH870797|Mus musculus domesticus DNA, BAC clone: B6Ng01-045E20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggattatggcaaacttagaagacagaattcacagaacttccca
ttatcttctatcacttgtattctttctggttcctcctatccaacgactcc
tgtgcattattaataacttgtttagattagaaccctcaatagttgcaaca
gattccaggaggggaagcacatagcatctagtcacataagtcataagtga
gcacatacggctctaattgataatacccagcccagagtcacacaagaagg
ccctagttaaaccttgtgagacacaaattaagcaaaaatagaaggaagaa
agtaggaatggaggagaataagacaagagaggaagggagcatttctagag
aacagtagatatacatgtagtgacatatgaaatctaaacaacattctaag
taccaaagagggcacatcattgtcatatgaaaagcaagctgattaaaata
atttattttaatattttaatacttctttttacatgtgttgtgttttaact
ttaatgaaaaatcttataatttgtactggctggctttgtgtgtcagcttg
acacaagctggagttatcacagagaaaggagtttcagttgaggaaatgcc
tccatgagatccaactgtaaggcattttctcaattaatgattaagggggg
aaaggccccttataggtgggaccatccctgggctggtagtcttgggttct
ataagagagcacgctgtgcaagccagtaagtaacatccctccatggcctc
tgcatcagctcctgcttcctgacctgcttgagttccagacctgaattcct
ttgttgatcaacagcatgtggaagtgtaagctgaataaatcctttcctcc
ccaacttgctgcttggtcatgttcgtgcagaatagaaaccctgactagac
ataatttgatttatatttggagctattttgtttcttatttgtccttttaa
gaaaaaaaaaaaacaaggatcaatcattcctcatatgaccttgaccctgt
atcacatgactaagagtcctccatttcaggaaattgaattgtgggatttt
gagttttatagattacttcaatatttactctacacgagaagaaattggcc
tttcctgtattaaaata
gaattcaatagcacactgtcaccaacggacaggtcattaaaagaaactac
agagagacaagcaaaactaagcgaagtcatgaatcaaatggatttcacag
atatctgcagaacattttactcccaaacaaaagaatatagcttgttctca
gaacctcatttaaacttctccaaaattgaccatgtaattgggcaaaaccc
aagcctcaacagatacaagaagattgaaataaatccatgcattctatcag
atgaccatgaactaaggctgtacttcaataaaacaaaaacaacagaaaat
acacatactcatggaaactgaacaactctttcctcaatgactacttggtc
agggatgaaagaaagaaattaaagactttctagaaggcagaacataccca
aactatgtcatacaatgaaagcagtgttaaaaggaaaattcatagcacta
agtgccttcatagataaatgggagagatcctattctatcatcttcacagc
acaactgaaagctctagaacaaaaagaagcaaatacatagaagaggaaca
gaaggaataaaatagcccaactcagagctgaaattaaccaattagaaaca
aagagaactatacgaagaatcaactaaaccaaactaaagagcacagagat
attacctaaattaacaaaatcagaaataaaaaagggagacataacagaac
ctgagaaaattttgaaaaaaatcagatcttactacaaaagtctatattca
acaaaactggaaaatccaaatgaaatggatggctttctagacagatacta
catactaaatataaatcaagattaggtaaactagctaaacagttccatac
ctgtaaagaaatagaaacactcattaacactctgacatagctctctctgt
gagctatgccatgcctgaaaatacagagtagatgctcacagtcctctatg
atggacaagatcctatgagagctagagaagtactcaggagctaagggtct
gcatctataggagtaccacatatgactaaatactaccgtaccctccctcc
gagctggtctagtgccattgtagcaaaagaatgcctagtcacgcttcatg
gaaggaaagctcctggtattggagaatcatgtccactcacggaatgccaa
gccagagcaactatgggtgggaacgccaggagttaggccttggaatacac
tcaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19655816_19656949
seq2: B6Ng01-045E20.b_44_1160

seq1  GAATTCAGGATTATGGCAAACTTAGAAGACAGAATTCACAGAACTTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATTATGGCAAACTTAGAAGACAGAATTCACAGAACTTCCCA  50

seq1  TTATCTTCTATCACTTGTATTCTTTCTGGTTCCTCCTATCCAACGACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCTATCACTTGTATTCTTTCTGGTTCCTCCTATCCAACGACTCC  100

seq1  TGTGCATTATTAATAACTTGTTTAGATTAGAACCCTCAATAGTTGCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTATTAATAACTTGTTTAGATTAGAACCCTCAATAGTTGCAACA  150

seq1  GATTCCAGGAGGGGAAGCACATAGCATCTAGTCACATAAGTCATAAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGGAGGGGAAGCACATAGCATCTAGTCACATAAGTCATAAGTGA  200

seq1  GCACATACGGCTCTAATTGATAATACCCAGCCCAGAGTCACACAAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACGGCTCTAATTGATAATACCCAGCCCAGAGTCACACAAGAAGG  250

seq1  CCCTAGTTAAACCTTGTGAGACACAAATTAAGCAAAAATAGAAGGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTTAAACCTTGTGAGACACAAATTAAGCAAAAATAGAAGGAAGAA  300

seq1  AGTAGGAATGGAGGAGAATAAGACAAGAGAGGAAGGGAGCATTTCTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAATGGAGGAGAATAAGACAAGAGAGGAAGGGAGCATTTCTAGAG  350

seq1  AACAGTAGATATACATGTAGTGACATATGAAATCTAAACAACATTCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGATATACATGTAGTGACATATGAAATCTAAACAACATTCTAAG  400

seq1  TACCAAAGAGGGCACATCATTGTCATATGAAAAGCAAGCTGATTAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGAGGGCACATCATTGTCATATGAAAAGCAAGCTGATTAAAATA  450

seq1  ATTTATTTTAATATTTTAATACTTCTTTTTACATGTGTTGTGTTTTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTAATATTTTAATACTTCTTTTTACATGTGTTGTGTTTTAACT  500

seq1  TTAATGAAAAATCTTATAATTTGTACTGGCTGGCTTTGTGTGTCAGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAAAATCTTATAATTTGTACTGGCTGGCTTTGTGTGTCAGCTTG  550

seq1  ACACAAGCTGGAGTTATCACAGAGAAAGGAGTTTCAGTTGAGGAAATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCTGGAGTTATCACAGAGAAAGGAGTTTCAGTTGAGGAAATGCC  600

seq1  TCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAATGATTAA-GGGGG  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAATGATTAAGGGGGG  650

seq1  AAAGGCCCCTTATAGGTGGGACCATCCCTGGGCTGGTAGTCTTGGGTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCCTTATAGGTGGGACCATCCCTGGGCTGGTAGTCTTGGGTTCT  700

seq1  ATAAGAGAGCAGGCTGTGCAAGCCAGTAAGTAACATCCCTCCATGGCCTC  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGAGCACGCTGTGCAAGCCAGTAAGTAACATCCCTCCATGGCCTC  750

seq1  TGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGACCTGAATTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGACCTGAATTCCT  800

seq1  TTGGTGATCAACAGCAATGTGGAAGTGTAAGCTGAATAAATCCTTTCCTC  849
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGTTGATCAACAGC-ATGTGGAAGTGTAAGCTGAATAAATCCTTTCCTC  849

seq1  CCCAACTTGCTGCTTGGTCATGTTCGTGCAGGAATAGAAACCCTGACTAA  899
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  CCCAACTTGCTGCTTGGTCATGTTCGTGCA-GAATAGAAACCCTGACT-A  897

seq1  GACATAATTTGATTTTATATTTGGAGCTAATTTTGTTTCTTAATTTGTCC  949
      |||||||||||| ||||||||||||||| |||||||||||| ||||||||
seq2  GACATAATTTGA-TTTATATTTGGAGCT-ATTTTGTTTCTT-ATTTGTCC  944

seq1  TTTTTAAAGAAAAAAAAAAAAACAAGGATCAAATCATTCCTCATATGACC  999
      ||||  ||| |||||||||||||||||||| |||||||||||||||||||
seq2  TTTT--AAG-AAAAAAAAAAAACAAGGATC-AATCATTCCTCATATGACC  990

seq1  TTGACCCTGTTATCACATGACT-AGAGTCACTCCATGTCAGGAAAAGTGA  1048
      ||||||||| |||||||||||| |||||| |||||| ||||| ||| |||
seq2  TTGACCCTG-TATCACATGACTAAGAGTC-CTCCATTTCAGG-AAATTGA  1037

seq1  ATTGTGGGATTTAGGATTTTAATAGAATTACTTCAAATATTACATCTTAA  1098
      ||||||||||||  || ||| |||| |||||||| ||||||   |||  |
seq2  ATTGTGGGATTT-TGAGTTTTATAG-ATTACTTC-AATATTTACTCT--A  1082

seq1  CAGAAGAGAAATATAGTCCTTCCATGTATTAAAATA  1134
      ||  ||| | | || | |||| | ||||||||||||
seq2  CACGAGA-AGAAATTGGCCTTTCCTGTATTAAAATA  1117