BAC Information

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BAC

Clone NameB6Ng01-045J05
Chromosome18 (Build37)
Map Location 37,640,346 - 37,641,487
singlet/doubletsinglet
Overlap genePcdhb16
Upstream geneHbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15
Downstream genePcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045J05.bB6Ng01-045J05.g
ACCDH870994DH870995
length1,1851,133
definitionDH870994|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J05, 5' end.DH870995|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacagccagtcccacaacacccagaggaagctccactcccaggt
gctctaacacacccaggatcataggactagaggtgaggaggaaacaacat
ctgccacaacacaggaagtaactgggactagtggaacccaggcacccagg
aactccacatgaccaggggcatgggttcctttcagtctgggccagtgtac
tgagcagaccttgggaacgaactcctcagacagtcctacaacacccagag
gaagctccactatcaggcactctaacatgcccaggataccaggagcatgg
tcacaccaggatctcagggtcccagagacaacttgactcccagaagctct
gacacacccaggttctcatgatcacaggatcacaggaacagctgaactct
gaggatctggcacaaccaggatcacaggaaagacagtatccagtcagaga
cagtaagagcaggtagcactagaaataatcagatggcaagaggcaagggc
aagaacataaggaacagaaaccaaggctacttggcatcatcagaacccag
ttctcctacctcaggaagccctggatatcccaacacaccagaaaggcaat
actctgatttaaaattacacctcattatgatgatagaggactttaagaag
tacataaataactccactaaagaaatactggagaacacaggtaaataggt
aaaagtccttaaagaggaaatacaaaaattccttttaaaagtacacaaaa
acacaatccatcacgcaaaggaaatgaacaaaaccattcaagatctaaaa
gtggaaatctaaacaataaagaaaaatacatccctggagaaagataacct
aggaaagagatcatgagtcatagatgcaagcatcactaacagaatacaga
gatagaagagagaatctcagcacagagataccatagaaacattgacacac
agtcaaagaaatgcaaaatctctagcccaaagcatcagaaacagacacat
agaaatcaactagatatagtaagagagagtgagatccatctaaagcagta
tttctcacaaatagagaaattctaactaagaaacttctaacttagaggat
gcatacatcagagctacgattcagtgaactggacgagatcaatcatcatc
aatcaatcgcataaggacagtgctaaacgagtata
gaattcagggtgtgttctctcactgaatacacccgacatagcaatgctca
aacacaacgaggtctaatcagataggagaacgaggggctcactgggacct
ctgccttttgctttatttggcctctactggactgtctttgttgatgtttt
ctcttaaaaatcttacttagccacatggttcctcattagcttgctattag
ttttcatatcactactttaagctgctttctactttgttcgtttgcttgct
tgcttgcttgcttgcttgcttgttttttggttggtgttgaggtttcagaa
tggtgtcccttatttacctggtaggttgaaagagcatagcagtagcattg
agttttcacttctgttaaatacttgccagtcagagaaactgcatcagcca
gtattgattttttttcctttctttgttgccattccacatttctttcttgc
cagtcatgtgcttagttaaaagaatacattttcactgtcttttttttttt
ctctagcaaatagattagggcatatggttagcttatagtgagatgtaaga
tgtggtgccttccacagctcttcagttgaagagaaactgggggggggacc
tatgcataccaagtaaggtctgtctctctgatctaccactttcaataccc
aagaacacttgtaaagggagatgtctcacctggaaagggatttcaccctt
tgttcatgttatgttcttcctaggatgttcgtggtataatgagcgcacaa
atactcatgttggctctgtgataggtgtgacgggctaaagtagcatgaaa
tggacttagctgtgatgatccctggcaactcaggagttctcatatttatt
ccccgcgttgcccattttcttagcctttttaaacattcagaaaaaaggaa
gtcccatgtcattattctagcttttatgctatggtcagttcttatgctat
ggaatctatttttgtgtttgtgtgtttgggtgcctgttggtgcatgagtg
cttgagatgtccttgcgcctctgcatgtgaggtcggaagttgatgtctac
tcgttgctcgtatactagactagcatgagctctgttgaaccttaacatac
tggtcttgatctggcatataaaggaaaagtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37640346_37641487
seq2: B6Ng01-045J05.g_67_1199

seq1  GAATTCAGGGTGTGTTCTCTCACTGAATACACCCGACATAGCAATGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTGTGTTCTCTCACTGAATACACCCGACATAGCAATGCTCA  50

seq1  AACACAACGAGGTCTAATCAGATAGGAGAACGAGGGGCTCACTGGGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACGAGGTCTAATCAGATAGGAGAACGAGGGGCTCACTGGGACCT  100

seq1  CTGCCTTTTGCTTTATTTGGCCTCTACTGGACTGTCTTTGTTGATGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTGCTTTATTTGGCCTCTACTGGACTGTCTTTGTTGATGTTTT  150

seq1  CTCTTAAAAATCTTACTTAGCCACATGGTTCCTCATTAGCTTGCTATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAAAATCTTACTTAGCCACATGGTTCCTCATTAGCTTGCTATTAG  200

seq1  TTTTCATATCACTACTTTAAGCTGCTTTCTACTTTGTTCGTTTGCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATCACTACTTTAAGCTGCTTTCTACTTTGTTCGTTTGCTTGCT  250

seq1  TGCTTGCTTGCTTGCTTGCTTGTTTTTTGGTTGGTGTTGAGGTTTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTGCTTGCTTGCTTGTTTTTTGGTTGGTGTTGAGGTTTCAGAA  300

seq1  TGGTGTCCCTTATTTACCTGGTAGGTTGAAAGAGCATAGCAGTAGCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCCTTATTTACCTGGTAGGTTGAAAGAGCATAGCAGTAGCATTG  350

seq1  AGTTTTCACTTCTGTTAAATACTTGCCAGTCAGAGAAACTGCATCAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCACTTCTGTTAAATACTTGCCAGTCAGAGAAACTGCATCAGCCA  400

seq1  GTATTGATTTTTTTTCCTTTCTTTGTTGCCATTCCACATTTCTTTCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGATTTTTTTTCCTTTCTTTGTTGCCATTCCACATTTCTTTCTTGC  450

seq1  CAGTCATGTGCTTAGTTAAAAGAATACATTTTCACTGTCTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGTGCTTAGTTAAAAGAATACATTTTCACTGTCTTTTTTTTTTT  500

seq1  CTCTAGCAAATAGATTAGGGCATATGGTTAGCTTATAGTGAGATGTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCAAATAGATTAGGGCATATGGTTAGCTTATAGTGAGATGTAAGA  550

seq1  TGTGGTGCCTTCCACAGCTCTTCAGTTGAAGAGAAACTGGGGGGGGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCCTTCCACAGCTCTTCAGTTGAAGAGAAACTGGGGGGGGGACC  600

seq1  TATGCATACCAAGTAAGGTCTGTCTCTCTGATCTACCACTTTCAATACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATACCAAGTAAGGTCTGTCTCTCTGATCTACCACTTTCAATACCC  650

seq1  AAGAACACTTGTAAAGGGAGATGTCTCACCTGGAAAGGGATTTCACCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACTTGTAAAGGGAGATGTCTCACCTGGAAAGGGATTTCACCCTT  700

seq1  TGTTCATGTTATGTTCTTCCTAGGATGTTCGTGGTATAATGAGCGCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGTTATGTTCTTCCTAGGATGTTCGTGGTATAATGAGCGCACAA  750

seq1  ATACTCATGTTGGCTCTGTGATAGGTGTGACGGGCTAAAGTAGCATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATGTTGGCTCTGTGATAGGTGTGACGGGCTAAAGTAGCATGAAA  800

seq1  TGGACTTAGCTGTGATGATCCCTGGCAACTCAGGAGTTCTCATA-TTATT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGACTTAGCTGTGATGATCCCTGGCAACTCAGGAGTTCTCATATTTATT  850

seq1  CCCCGCGTTG-CCAATTTCTTAGCCTTTTTAAACATTCAGAAATAAAGGA  898
      |||||||||| ||| |||||||||||||||||||||||||||| ||||||
seq2  CCCCGCGTTGCCCATTTTCTTAGCCTTTTTAAACATTCAGAAA-AAAGGA  899

seq1  AGTCCCATGTCATTATTCTAGCTTTTATGCTATGGTCAGTTCTTATGCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATGTCATTATTCTAGCTTTTATGCTATGGTCAGTTCTTATGCTA  949

seq1  TGGAATCTATTTGTGTGTTTGTGTGTTTGTGTGCCTGTTGGTGCATGAGT  998
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  TGGAATCTATTTTTGTGTTTGTGTGTTTGGGTGCCTGTTGGTGCATGAGT  999

seq1  GCTTGCAGATGTCCTTGCGCCTCTGCATGTTGAGGTCGGAAGTTGATGTC  1048
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTTG-AGATGTCCTTGCGCCTCTGCATG-TGAGGTCGGAAGTTGATGTC  1047

seq1  TACCTTCGTTGCTCAGTTATCTAGACTAGCCAGGGAGCTCTGTGGAAACA  1098
      |||  ||||||||| ||   ||||||||||    ||||||||| | ||| 
seq2  TAC--TCGTTGCTC-GTATACTAGACTAGC--ATGAGCTCTGTTG-AACC  1091

seq1  CTGACTAACTGGTCATGATTCTGGGCAATAAAAGGAAAAGTCTG  1142
       | ||  ||||||| ||| ||| ||||   ||||||||||||||
seq2  TTAACATACTGGTCTTGA-TCT-GGCATATAAAGGAAAAGTCTG  1133