BAC Information

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BAC

Clone NameB6Ng01-045L10
Chromosome18 (Build37)
Map Location 80,688,113 - 80,838,265
singlet/doubletdoublet
Overlap geneLOC100039336, A430076E10Rik, LOC100039348, Nfatc1
Upstream geneLOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389
Downstream geneAtp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045L10.bB6Ng01-045L10.g
ACCDH871089DH871090
length1,1101,110
definitionDH871089|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L10, 5' end.DH871090|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,688,113 - 80,689,230)(80,837,131 - 80,838,265)
sequence
gaattctctttctggaaataagtagcaactagtatctaatgaggtgtttg
ggactctctcacccctgagggagggatcatttgctgctctcaggcctcag
aagcaggcggcctttgatttacttcatgccatcagataagcaaagggaag
gtcggccccaggacgagagggaacttcatcatgcagataatgaaatcagg
aagcagctctttatggaattagggacctgtgcatgtgagctaggagttat
gggtgtcactgggggctcagtgggagcgagggggaagagattcaggatct
ttgggccacatagccattcgtgagacttagctagcttctctgaaacttga
caatcaagttagtgagccgcttggggtttctggcttctttgtactgagat
acatctcagggctaggaggggtagggaggtctctcttttcccccaagtgc
ctctccctttccatgcaatgttgcataggtacatgagtgtacacccatac
atgcacgtgtgggctctcaaggcttcttggactatttgatgatattagtg
accagaggtctaactatcctattatcctcattttccaaagatatcctgca
ttttgagtagtcgacgtgactggttaccaaagaggctgccaaaggttttc
agctttgggtcatctatagactttctttgggtctgttaccgggactattc
tgcccttgctcacacacatctgtgcgcagctgccttcagcaggccagcca
cggctttctcctagagaagtatagatggaaagaacgcgagcttgctaggg
ttgctttgcagcatagttgcaggctctggggtaggagtgcccacacttcc
tctcatgttcatgtggacaagcacagctttgcacgatgctgcttcacgga
aagagtttgtcctattattaagcatctgcttgcagtacttgggggcgaag
agaaaaagaattttaaaaacatttaccgagggaccgagtcgatggctaaa
taagcatagcatctggttccagtgcatctcctcttaggcaccccacagca
tacctgcaggagctggcgggatctctgtacctcccattccaaacacggat
gatgcacagg
gaattcccccaggatccttctgtgtgcataaacttatagcccagccccag
tacagcctcagcacagacttaatccttagccacacactggagagggcctc
aaatcagaaccacagagaccctggctctcacctggaccttgtgcacagca
ggcagcctttggagagtgcctataagccattttagaagtatagtttccca
gaaagagcttcccacctaacctggaaggacaagccccagagatggaactc
tgtgaggcccaggagaggagcgtcagccaagcacaacctgcccagtggct
cacagatgaatggcctcattgggaggcatcctcacctggtgttggcatgt
aggaacagaagactatttgctaggcttaagtctcaagtctagagtcaagg
aatgctctttaaggctccttggcccatagactatcattgcaggacctgca
ggagatgggacggagaaggagccttcccccatcacacaaccgagcatgtg
ccattgacggtgtcagccacacttggctggagaaatcctggaggacagtg
agccccaacctgggacacaaactttgaggcgactccaggtcaaatccctc
agccgtccttagactcttcgaggagtgggctcaccacaccagcacttgta
tgtgatccctgcaaggcgctgccgtgtacaaggttgctggactacggtga
ctgctgtggctgtcaggtgcacacagtgccgggcatgcacgatgacacac
atctcccatggccgcacagacccagcattgtgctgtgctgggtgtgagga
tcagtcacagcaggagccagcagcccacctttcttcatgagggcttgctt
tgtctctgacagctggcccaaaagattgccgttaatccttcatgtgctcg
ctttccataataaactctgtatataaactcacgactgggctcatgtgctg
tttcatgtgctagcatgcgtgagctctgctgcactgattcccttcccacc
ccaccccgccccagttagcacgagacatgcgtcaaccctgcttccctctg
gcgcagaacagacaggcttgggcttctgtgggactcagttcattctgact
ataggaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_80688113_80689230
seq2: B6Ng01-045L10.b_47_1156

seq1  GAATTCTCTTTCTGGAAATAAGTAGCAACTAGTATCTAATGAGGTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTGGAAATAAGTAGCAACTAGTATCTAATGAGGTGTTTG  50

seq1  GGACTCTCTCACCCCTGAGGGAGGGATCATTTGCTGCTCTCAGGCCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTCTCACCCCTGAGGGAGGGATCATTTGCTGCTCTCAGGCCTCAG  100

seq1  AAGCAGGCGGCCTTTGATTTACTTCATGCCATCAGATAAGCAAAGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCGGCCTTTGATTTACTTCATGCCATCAGATAAGCAAAGGGAAG  150

seq1  GTCGGCCCCAGGACGAGAGGGAACTTCATCATGCAGATAATGAAATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCCCCAGGACGAGAGGGAACTTCATCATGCAGATAATGAAATCAGG  200

seq1  AAGCAGCTCTTTATGGAATTAGGGACCTGTGCATGTGAGCTAGGAGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTCTTTATGGAATTAGGGACCTGTGCATGTGAGCTAGGAGTTAT  250

seq1  GGGTGTCACTGGGGGCTCAGTGGGAGCGAGGGGGAAGAGATTCAGGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCACTGGGGGCTCAGTGGGAGCGAGGGGGAAGAGATTCAGGATCT  300

seq1  TTGGGCCACATAGCCATTCGTGAGACTTAGCTAGCTTCTCTGAAACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCACATAGCCATTCGTGAGACTTAGCTAGCTTCTCTGAAACTTGA  350

seq1  CAATCAAGTTAGTGAGCCGCTTGGGGTTTCTGGCTTCTTTGTACTGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGTTAGTGAGCCGCTTGGGGTTTCTGGCTTCTTTGTACTGAGAT  400

seq1  ACATCTCAGGGCTAGGAGGGGTAGGGAGGTCTCTCTTTTCCCCCAAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAGGGCTAGGAGGGGTAGGGAGGTCTCTCTTTTCCCCCAAGTGC  450

seq1  CTCTCCCTTTCCATGCAATGTTGCATAGGTACATGAGTGTACACCCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTTCCATGCAATGTTGCATAGGTACATGAGTGTACACCCATAC  500

seq1  ATGCACGTGTGGGCTCTCAAGGCTTCTTGGACTATTTGATGATATTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGTGTGGGCTCTCAAGGCTTCTTGGACTATTTGATGATATTAGTG  550

seq1  ACCAGAGGTCTAACTATCCTATTATCCTCATTTTCCAAAGATATCCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGTCTAACTATCCTATTATCCTCATTTTCCAAAGATATCCTGCA  600

seq1  TTTTGAGTAGTCGACGTGACTGGTTACCAAAGAGGCTGCCAAAGGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTAGTCGACGTGACTGGTTACCAAAGAGGCTGCCAAAGGTTTTC  650

seq1  AGCTTTGGGTCATCTATAGACTTTCTTTGGGTCTGTTACCGGGACTATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGGTCATCTATAGACTTTCTTTGGGTCTGTTACCGGGACTATTC  700

seq1  TGCCCTTGCTCACACACATCTGTGCGCAGCTGCCTTCAGGCAGGCCAGCC  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCCCTTGCTCACACACATCTGTGCGCAGCTGCCTTCA-GCAGGCCAGCC  749

seq1  ACGGCTTTCTCCTAGAGAAGTATAGATGGAAGGAACGCGAGCTTGCTAGG  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACGGCTTTCTCCTAGAGAAGTATAGATGGAAAGAACGCGAGCTTGCTAGG  799

seq1  GTTGCTTTGCAGCATAGTTGCAGGCTCTGGGGTAGGAGTGCCCACACTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTGCAGCATAGTTGCAGGCTCTGGGGTAGGAGTGCCCACACTTC  849

seq1  CTCTCATGTTCATGTGGACAAGCACAGCTTTGCACGATGCTGCTTCACGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATGTTCATGTGGACAAGCACAGCTTTGCACGATGCTGCTTCACGG  899

seq1  AAGGAGTTTGTCCTATTATTAAGCATCTGCTTGCAGTACTTGGGGGCGAA  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTTGTCCTATTATTAAGCATCTGCTTGCAGTACTTGGGGGCGAA  949

seq1  GAGAAAAAGACATTTTAGAAACATTTACCGAGGGACCGAGTCGATGGCTA  1000
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGA-ATTTTAAAAACATTTACCGAGGGACCGAGTCGATGGCTA  998

seq1  AATAAGCATAGCATCTGGTTCCAGTGCATCTCCTCTTAGGCACCCCACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATAAGCATAGCATCTGGTTCCAGTGCATCTCCTCTTAGGCACCCCACA-  1047

seq1  GCCACAGCCTGCAGGGAGCTGGCGGGCATCTCTGTCACCCACTTACCAAA  1100
        || | |||||| |||||||||||| ||||||||  | | | | |||||
seq2  -GCATA-CCTGCA-GGAGCTGGCGGG-ATCTCTGTACCTCCCATTCCAAA  1093

seq1  CACGGCATGATGCACAGG  1118
      ||||| ||||||||||||
seq2  CACGG-ATGATGCACAGG  1110

seq1: chr18_80837131_80838265
seq2: B6Ng01-045L10.g_70_1179 (reverse)

seq1  TGTTTCCTATTAGTCAGGAAATGGGACCTGGGCTCCACAGAAGCCCCAGG  50
      ||||||||| |||||||  |||  || ||| |  |||||||||||| |  
seq2  TGTTTCCTA-TAGTCAG--AAT--GAACTGAGTCCCACAGAAGCCCAA--  43

seq1  CGCTGGTCTGTCTCCTGCGCCAGAGGGAGGCAGGGGTGTGACGCAATGTC  100
       ||  |||||  | |||||||||||||| ||||||   |||||| |||||
seq2  -GCCTGTCTG--TTCTGCGCCAGAGGGAAGCAGGG--TTGACGC-ATGTC  87

seq1  TCCGTGCTAGACTGGGGGGCCGGGGGTGGGGTGGGGAGGGGAATCCAGTG  150
      | ||||||| |||||||     |||||||||| |||| |||||| |||||
seq2  T-CGTGCTA-ACTGGGG----CGGGGTGGGGT-GGGAAGGGAAT-CAGTG  129

seq1  CAGCAGAGCTCACCGCAATGCTAGCACATTGAAAACAGCACATGAGCCCA  200
      |||||||||||| ||| ||||||||||||   ||||||||||||||||||
seq2  CAGCAGAGCTCA-CGC-ATGCTAGCACAT--GAAACAGCACATGAGCCCA  175

seq1  GTCGTGAGTTTATTATACAGAGTTTATTATGGAAAGCGAGCACATGAAGG  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCGTGAGTTTA-TATACAGAGTTTATTATGGAAAGCGAGCACATGAAGG  224

seq1  ATTAACGGCAATCTTTTGGGCCAGCTGTCAGAGACAAAGCAAGCCCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACGGCAATCTTTTGGGCCAGCTGTCAGAGACAAAGCAAGCCCTCAT  274

seq1  GAAG-AAGGTGGGCTGCTGGCTCCTGCTGTGACTGATCCTCACACCCAGC  349
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGTGGGCTGCTGGCTCCTGCTGTGACTGATCCTCACACCCAGC  324

seq1  ACAGCACAATGCTGGGTCTGTGCGGCCATGGGAGATGTGTGTCATCGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAATGCTGGGTCTGTGCGGCCATGGGAGATGTGTGTCATCGTGC  374

seq1  ATGCCCGGCACTGTGTGCACCTGACAGCCACAGCAGTCACCGTAGTCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCGGCACTGTGTGCACCTGACAGCCACAGCAGTCACCGTAGTCCAG  424

seq1  CAACCTTGTACACGGCAGCGCCTTGCAGGGATCACATACAAGTGCTGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGTACACGGCAGCGCCTTGCAGGGATCACATACAAGTGCTGGTG  474

seq1  TGGTGAGCCCACTCCTCGAAGAGTCTAAGGACGGCTGAGGGATTTGACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCCCACTCCTCGAAGAGTCTAAGGACGGCTGAGGGATTTGACCT  524

seq1  GGAGTCGCCTCAAAGTTTGTGTCCCAGGTTGGGGCTCACTGTCCTCCAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCGCCTCAAAGTTTGTGTCCCAGGTTGGGGCTCACTGTCCTCCAGG  574

seq1  ATTTCTCCAGCCAAGTGTGGCTGACACCGTCAATGGCACATGCTCGGTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCAGCCAAGTGTGGCTGACACCGTCAATGGCACATGCTCGGTTG  624

seq1  TGTGATGGGGGAAGGCTCCTTCTCCGTCCCATCTCCTGCAGGTCCTGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGGGGAAGGCTCCTTCTCCGTCCCATCTCCTGCAGGTCCTGCAA  674

seq1  TGATAGTCTATGGGCCAAGGAGCCTTAAAGAGCATTCCTTGACTCTAGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTCTATGGGCCAAGGAGCCTTAAAGAGCATTCCTTGACTCTAGAC  724

seq1  TTGAGACTTAAGCCTAGCAAATAGTCTTCTGTTCCTACATGCCAACACCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTTAAGCCTAGCAAATAGTCTTCTGTTCCTACATGCCAACACCA  774

seq1  GGTGAGGATGCCTCCCAATGAGGCCATTCATCTGTGAGCCACTGGGCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGATGCCTCCCAATGAGGCCATTCATCTGTGAGCCACTGGGCAGG  824

seq1  TTGTGCTTGGCTGACGCTCCTCTCCTGGGCCTCACAGAGTTCCATCTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTGGCTGACGCTCCTCTCCTGGGCCTCACAGAGTTCCATCTCTG  874

seq1  GGGCTTGTCCTTCCAGGTTAGGTGGGAAGCTCTTTCTGGGAAACTATACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGTCCTTCCAGGTTAGGTGGGAAGCTCTTTCTGGGAAACTATACT  924

seq1  TCTAAAATGGCTTATAGGCACTCTCCAAAGGCTGCCTGCTGTGCACAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATGGCTTATAGGCACTCTCCAAAGGCTGCCTGCTGTGCACAAGG  974

seq1  TCCAGGTGAGAGCCAGGGTCTCTGTGGTTCTGATTTGAGGCCCTCTCCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGAGAGCCAGGGTCTCTGTGGTTCTGATTTGAGGCCCTCTCCAG  1024

seq1  TGTGTGGCTAAGGATTAAGTCTGTGCTGAGGCTGTACTGGGGCTGGGCTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCTAAGGATTAAGTCTGTGCTGAGGCTGTACTGGGGCTGGGCTA  1074

seq1  TAAGTTTATGCACACAGAAGGATCCTGGGGGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTATGCACACAGAAGGATCCTGGGGGAATTC  1110