BAC Information

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BAC

Clone NameB6Ng01-046C14
Chromosome18 (Build37)
Map Location 44,761,168 - 44,762,245
singlet/doubletsinglet
Overlap genenone
Upstream geneJakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
Downstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046C14.bB6Ng01-046C14.g
ACCDH871406DH871407
length1,1351,044
definitionDH871406|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C14, 5' end.DH871407|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctgtcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcagacttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagtcttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgttaagtggatattagcccaaaatc
taggatatccaagatataagatacaatttcctaaacacatgaaactcaat
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaaggagttacagagacaaagtttggagctgagata
aaaagatggaccatgtagagactgccatatcccgggatccatcccataat
cagcttccaaatgctgacaccattgcatacactagcagatatgctgaaag
gaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaacat
agagtggatgctcacagtcgctattgatgatcacatggcccccatgagag
ctagagaagtacccagagctaaaggatctgcaccctatagtgacacatat
gactacagtaccccgagctctgactctagctgcaatgatcaaagatggct
agcggccatcactggaagagaggccattgaccgcaccttaatgccagtag
gacgcccagggcaaaagggatggtgggagggaatg
gaattcctttggggatgtaaactgatagccacatgtgtttgattatcgga
acggaggtgacagggaggcaggtatttcagttagagatggatccttcttt
gatttattgcctcatgtgctgacattttatcttttaaagaatatggagtg
gaaaggatgaggccaccgcttgttctctgaatttggtttctttttccagt
gaagtccgtttggttttgaataatttaaagttcatatggcacctttcact
gtgtgagcagagtcatctgctttggaacatctaagaaaaactgtggagga
gacgtagcagcaggactaatgggaagaattttctagtcatttttagcagc
tcccagaagatagatttctttctcatacacacacacacacacagagagcg
agagagatgcacacacacacacacagaggcatagatacacacactcacac
acacacacacacatacactcacacacagacacagatacacactcagacac
atacatacacagacacccaaagacacacacacacaacacacacacgtcct
ctggtatccagctttacagggcagaataactgtacaaaccttggtcctaa
ctcatctcaaaccatttacatgatcttttcatgtatctccagtcagtaac
cttcgagttaccatttggtgcagacctgcagctacatttcgtgccttgta
ctctcctagggtctgcatatccgggatccatgcacaagtgccctgttatg
aacaagctgggtggggcatagagtttccttgaggaaacgggcaagaggaa
ggcgtcctgtttaactctggctggtttctatatatatacctgctgcgctc
agcatggctctggtgtctcttgtgtgaaagttgagacgtgggagatctgc
tgtgtcaaagcatgttaggggactgtctgctagctgaccatatatggctg
cgtatctttcacctctgctatgatgcgactgctgatcagcacagttcaca
aggaggtgcagtagctgacgttgctgctgcagcatgctgttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44761168_44762245
seq2: B6Ng01-046C14.g_68_1111 (reverse)

seq1  GAGAACAGCATTGCTGCAGCAGCACACCGTTCAGCTTACCTGCACCTTCC  50
      |||||||||| ||||||||||||| ||   ||||||   ||||||||  |
seq2  GAGAACAGCA-TGCTGCAGCAGCA-AC--GTCAGCT--ACTGCACCT--C  42

seq1  TTTGTGAACTGTGCCTGGATCCAGCAAGTCTGCATCATAGCAGAGGTGAA  100
       |||||||||||||   ||| |||| |||| |||||||||||||||||||
seq2  CTTGTGAACTGTGC--TGAT-CAGC-AGTC-GCATCATAGCAGAGGTGAA  87

seq1  AGATACCGCAAGCCCATAATATGTGTCAGGCTAGCAAGACAGGTCCCCCT  150
      ||||| ||||   |||| ||||| |||| |||||| ||||| ||||||  
seq2  AGATA-CGCA--GCCAT-ATATG-GTCA-GCTAGC-AGACA-GTCCCC--  127

seq1  AAACATGCTTTTGACACAGCCAAGATCTCCCACGTCTTCAACTTTCAACA  200
       ||||||| |||||||||||  |||||||||||||| ||||||||| |||
seq2  TAACATGC-TTTGACACAGC--AGATCTCCCACGTC-TCAACTTTC-ACA  172

seq1  CAAGAGAACACCAGAAGGCCATGCTGAGCGCAGCAGGTATTATATATAGA  250
      |||||| ||||||||  |||||||||||||||||||||| ||||||||||
seq2  CAAGAG-ACACCAGA--GCCATGCTGAGCGCAGCAGGTA-TATATATAGA  218

seq1  AACCAGCCAGAGTTAAAACAGGACGCCTTCCTCTTGCCCGTTTCCTCAAG  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACCAGCCAGAGTT-AAACAGGACGCCTTCCTCTTGCCCGTTTCCTCAAG  267

seq1  GAAACTCTATGCCCCACCCAGCCTTGTTCATAACAGGGCACTTGTGCATG  350
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAACTCTATGCCCCACCCAG-CTTGTTCATAACAGGGCACTTGTGCATG  316

seq1  GATCCCGGATATGCAGACCCTAGGAGAGTACAAGGCACGAAATGTAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCGGATATGCAGACCCTAGGAGAGTACAAGGCACGAAATGTAGCTG  366

seq1  CAGGTCTGCACCAAATGGTAACTCGAAGGTTACTGACTGGAGATACATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGCACCAAATGGTAACTCGAAGGTTACTGACTGGAGATACATGA  416

seq1  AAAGATCATGTAAATGGTTTGAGATGAGTTAGGACCAAGGTTTGTACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCATGTAAATGGTTTGAGATGAGTTAGGACCAAGGTTTGTACAGT  466

seq1  TATTCTGCCCTGTAAAGCTGGATACCAGAGGACGTGTGTGTGTTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCCCTGTAAAGCTGGATACCAGAGGACGTGTGTGTGTTGTGTGT  516

seq1  GTGTGTCTTTGGGTGTCTGTGTATGTATGTGTCTGAGTGTGTATCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTTTGGGTGTCTGTGTATGTATGTGTCTGAGTGTGTATCTGTGT  566

seq1  CTGTGTGTGAGTGTATGTGTGTGTGTGTGTGTGAGTGTGTGTATCTATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGAGTGTATGTGTGTGTGTGTGTGTGAGTGTGTGTATCTATGC  616

seq1  CTCTGTGTGTGTGTGTGTGCATCTCTCTCGCTCTCTGTGTGTGTGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTGTGTGTGTGCATCTCTCTCGCTCTCTGTGTGTGTGTGTGT  666

seq1  GTATGAGAAAGAAATCTATCTTCTGGGAGCTGCTAAAAATGACTAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGAAAGAAATCTATCTTCTGGGAGCTGCTAAAAATGACTAGAAAA  716

seq1  TTCTTCCCATTAGTCCTGCTGCTACGTCTCCTCCACAGTTTTTCTTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCATTAGTCCTGCTGCTACGTCTCCTCCACAGTTTTTCTTAGAT  766

seq1  GTTCCAAAGCAGATGACTCTGCTCACACAGTGAAAGGTGCCATATGAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAAGCAGATGACTCTGCTCACACAGTGAAAGGTGCCATATGAACT  816

seq1  TTAAATTATTCAAAACCAAACGGACTTCACTGGAAAAAGAAACCAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATTCAAAACCAAACGGACTTCACTGGAAAAAGAAACCAAATTC  866

seq1  AGAGAACAAGCGGTGGCCTCATCCTTTCCACTCCATATTCTTTAAAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAGCGGTGGCCTCATCCTTTCCACTCCATATTCTTTAAAAGAT  916

seq1  AAAATGTCAGCACATGAGGCAATAAATCAAAGAAGGATCCATCTCTAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCAGCACATGAGGCAATAAATCAAAGAAGGATCCATCTCTAACT  966

seq1  GAAATACCTGCCTCCCTGTCACCTCCGTTCCGATAATCAAACACATGTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACCTGCCTCCCTGTCACCTCCGTTCCGATAATCAAACACATGTGG  1016

seq1  CTATCAGTTTACATCCCCAAAGGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  CTATCAGTTTACATCCCCAAAGGAATTC  1044