BAC Information

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BAC

Clone NameB6Ng01-046G23
Chromosome18 (Build37)
Map Location 80,840,900 - 81,007,536
singlet/doubletdoublet
Overlap geneNfatc1, Atp9b
Upstream geneLOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348
Downstream geneSall3, LOC665124, LOC100039458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046G23.bB6Ng01-046G23.g
ACCDH871602DH871603
length1,0481,098
definitionDH871602|Mus musculus domesticus DNA, BAC clone: B6Ng01-046G23, 5' end.DH871603|Mus musculus domesticus DNA, BAC clone: B6Ng01-046G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,006,487 - 81,007,536)(80,840,900 - 80,842,017)
sequence
gaattctcataattaacttattttcataacctcagagtctagcacacagg
tgtaggaggcatgtaattacttgtttagttttccttacaatgaatttaat
gaactttctgagaaacttgtttctctttctttctagcaatggcttctcat
ggtctcataagagtttgagacaaattttaaccaaaactagatttaaacta
attatgagctatgagaaaaagctaattttctgagtacttcagctaattct
caattttttacatttaagagctagtgttttattttcttttattttttaat
taacatttgttggttattttctcctccccctcccccccctccatttttct
ctccctgccacaaccccttgccctgactccctatatatatattttttaaa
ctatgccagattcagggtggcagggagatgcttagcctgatagaattcag
tctgctgttcacaccacctgagtcaggtatcccagtggccagtggccatg
acctcattccagtattgtgtatatgcccaataaccaagctcctccaacca
ccattactcaatggatagagtttggtgctgggccagatgcaatcactcat
tcctggcttttaatatttttggaggtagagggcaggaggatcaaagttag
gggtcaccctgtctatgtagggagttccaggttcaagcagggcttgttat
gcacagaaattgcataacaagatcctgaattttttaaattaattaattaa
ttaaaaaattttttgcggttagtccccaaagtcacacatcttctctgaag
agtagtaactgggttcaaagtgaatgtctaacagtgaacacaatgtgcct
gctagacttaaagttgtgtgacactgtgcacagcttgcctccctccctgc
tagacttagagagctgtgccatattgacactgtgtacagacacagtgttg
cttccttctagagcctagccagaagctgctgagaagtccttattgtacat
taggagctgaggtcgggcctgggctatacccttcgaggtagatccaaa
gaattctatgggcagatcacaggcggagctctctgctctccctcccgccc
atgcatgtctcctccgtgctcagcctccttgggtgttcagctcactctga
ctcacgcttttgtttgtttttggtggcacatggcccttagatttctaaac
aaaactaccttcctgcccttcatcctaatggcctattgtgttctgtgatc
gctccacaagacattggcctccctctcgggcccttgtaaattgcaggttt
tctattccatggttcctcaaatgtcccagtcacagccatcctctgcgggc
actccaggtgccacatggtttgctctctctgtctcaattatctccaggca
accttctacccttcatctccttccctgtgtgaaaatggagagtccacaga
agcacaaggtgtgtgcacgcacatggacacagcttaggcttgagaggcct
gcatctcttggagctgtcacattagcacccagacaagtgttcacttcagt
ttgaggccttctaacacatgggaagacctgagagatcacatagtgcagaa
atggcctcttctgatgcctaaccttcctcgtggtgcagcagggctggcct
gggtgcaagtgttagctccttctcttcggcacatcagtgtcggtatgaga
aacagactccctcctccctggagatagatttgagagtttaaagtagccag
gactccttgatccagaggtctagacagcccttggccattctccaaatgtc
tactgaccggtgtcatttgaacatgaaggcacacagctacatggccagtt
gggtgctgaggtcatggcagttgaaggtagtaccacctgtagctttaggc
gccagagacagcgctcctttggcccatcctgacctctctcacttccgcaa
ggtcttcactagcttttagagaaaatcagaagcagggtccctagattaca
tcacttgcctcgttacacacacattgtgttctctgcatttgaagcttcat
gggctcttttaaggaggaaagctcagctgaatgatgtaatgtggagactt
cctgcttttaatccacaagccacatgctgaatggtttctccacaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_81006487_81007536
seq2: B6Ng01-046G23.b_42_1089 (reverse)

seq1  TTTGGACTCTACCTCTGAAGGGTATAGCCCAGGCCGGCCCTCAGCTTCTT  50
      |||||| |||||||| ||||||||||||||||||| | ||||||| || |
seq2  TTTGGA-TCTACCTC-GAAGGGTATAGCCCAGGCCCGACCTCAGC-TCCT  47

seq1  ACTGTACAATAAGGACCTCTCAGCAGCTTCTTGGCTAGGCTCTGAGAAGG  100
      | |||||||||||||| ||||||||||||| |||||||||||| ||||||
seq2  AATGTACAATAAGGACTTCTCAGCAGCTTC-TGGCTAGGCTCT-AGAAGG  95

seq1  AAGCAACACTGTGTCTGTACACAGTGTC-ATATGGCACAGCTCTCTAAGT  149
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGCAACACTGTGTCTGTACACAGTGTCAATATGGCACAGCTCTCTAAGT  145

seq1  CTAGCAGGGAGGGAGGCAATGCTGTGCACAGTGTCACACAACTCTAAGTC  199
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  CTAGCAGGGAGGGAGGCAA-GCTGTGCACAGTGTCACACAACTTTAAGTC  194

seq1  TAGCAGGCACATTGTGTTCACTGTTAGACATTCACTTTGGACCCAGTTAC  249
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGCAGGCACATTGTGTTCACTGTTAGACATTCACTTTGAACCCAGTTAC  244

seq1  TACTCTTCAGAGAAGATGTGTGACTTTGGGGACTAACCGCAAAAAATTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCAGAGAAGATGTGTGACTTTGGGGACTAACCGCAAAAAATTTT  294

seq1  TTAATTAATTAATTAATTTAAAAAATTCAGGATCTTGTTATGCAATTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATTAATTAATTTAAAAAATTCAGGATCTTGTTATGCAATTTCT  344

seq1  GTGCATAACAAGCCCTGCTTG-ACCTGGAACTCCCTACATAGACAGGGTG  398
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGCATAACAAGCCCTGCTTGAACCTGGAACTCCCTACATAGACAGGGTG  394

seq1  ACCCCTAACTTTGATCCTCCTG-CCTCTACCTCC-AAAATATTAAAAGCC  446
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  ACCCCTAACTTTGATCCTCCTGCCCTCTACCTCCAAAAATATTAAAAGCC  444

seq1  AGGAATGAGTGATTGCATCTGGCCCAGCACCAAACTCTATCCATTGAGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAGTGATTGCATCTGGCCCAGCACCAAACTCTATCCATTGAGTA  494

seq1  ATGGTGGTTGGAGGAGCTTGGTTATTGGGCATATACACAATACTGGAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTTGGAGGAGCTTGGTTATTGGGCATATACACAATACTGGAATG  544

seq1  AGGTCATGGCCACTGGCCACTGGGATACCTGACTCAGGTGGTGTGAACAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGGCCACTGGCCACTGGGATACCTGACTCAGGTGGTGTGAACAG  594

seq1  CAGACTGAATTCTATCAGGCTAAGCATCTCCCTGCCACCCTGAATCTGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAATTCTATCAGGCTAAGCATCTCCCTGCCACCCTGAATCTGGC  644

seq1  ATAGTTTAAAAAATATATATATAGGGAGTCAGGGCAAGGGGTTGTGGCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAAAAAATATATATATAGGGAGTCAGGGCAAGGGGTTGTGGCAG  694

seq1  GGAGAGAAAAATGGAGGGGGGGGAGGGGGAGGAGAAAATAACCAACAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAAAATGGAGGGGGGGGAGGGGGAGGAGAAAATAACCAACAAAT  744

seq1  GTTAATTAAAAAATAAAAGAAAATAAAACACTAGCTCTTAAATGTAAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTAAAAAATAAAAGAAAATAAAACACTAGCTCTTAAATGTAAAAA  794

seq1  ATTGAGAATTAGCTGAAGTACTCAGAAAATTAGCTTTTTCTCATAGCTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAATTAGCTGAAGTACTCAGAAAATTAGCTTTTTCTCATAGCTCA  844

seq1  TAATTAGTTTAAATCTAGTTTTGGTTAAAATTTGTCTCAAACTCTTATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTTTAAATCTAGTTTTGGTTAAAATTTGTCTCAAACTCTTATGA  894

seq1  GACCATGAGAAGCCATTGCTAGAAAGAAAGAGAAACAAGTTTCTCAGAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGAGAAGCCATTGCTAGAAAGAAAGAGAAACAAGTTTCTCAGAAA  944

seq1  GTTCATTAAATTCATTGTAAGGAAAACTAAACAAGTAATTACATGCCTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAAATTCATTGTAAGGAAAACTAAACAAGTAATTACATGCCTCC  994

seq1  TACACCTGTGTGCTAGACTCTGAGGTTATGAAAATAAGTTAATTATGAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTGTGTGCTAGACTCTGAGGTTATGAAAATAAGTTAATTATGAGA  1044

seq1  ATTC  1050
      ||||
seq2  ATTC  1048

seq1: chr18_80840900_80842017
seq2: B6Ng01-046G23.g_67_1164

seq1  GAATTCTATGGGCAGATCACAGGCGGAGCTCTCTGCTCTCCCTCCCGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGGCAGATCACAGGCGGAGCTCTCTGCTCTCCCTCCCGCCC  50

seq1  ATGCATGTCTCCTCCGTGCTCAGCCTCCTTGGGTGTTCAGCTCACTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTCTCCTCCGTGCTCAGCCTCCTTGGGTGTTCAGCTCACTCTGA  100

seq1  CTCACGCTTTTGTTTGTTTTTGGTGGCACATGGCCCTTAGATTTCTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCTTTTGTTTGTTTTTGGTGGCACATGGCCCTTAGATTTCTAAAC  150

seq1  AAAACTACCTTCCTGCCCTTCATCCTAATGGCCTATTGTGTTCTGTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACCTTCCTGCCCTTCATCCTAATGGCCTATTGTGTTCTGTGATC  200

seq1  GCTCCACAAGACATTGGCCTCCCTCTCGGGCCCTTGTAAATTGCAGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACAAGACATTGGCCTCCCTCTCGGGCCCTTGTAAATTGCAGGTTT  250

seq1  TCTATTCCATGGTTCCTCAAATGTCCCAGTCACAGCCATCCTCTGCGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCATGGTTCCTCAAATGTCCCAGTCACAGCCATCCTCTGCGGGC  300

seq1  ACTCCAGGTGCCACATGGTTTGCTCTCTCTGTCTCAATTATCTCCAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGTGCCACATGGTTTGCTCTCTCTGTCTCAATTATCTCCAGGCA  350

seq1  ACCTTCTACCCTTCATCTCCTTCCCTGTGTGAAAATGGAGAGTCCACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTACCCTTCATCTCCTTCCCTGTGTGAAAATGGAGAGTCCACAGA  400

seq1  AGCACAAGGTGTGTGCACGCACATGGACACAGCTTAGGCTTGAGAGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGGTGTGTGCACGCACATGGACACAGCTTAGGCTTGAGAGGCCT  450

seq1  GCATCTCTTGGAGCTGTCACATTAGCACCCAGACAAGTGTTCACTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCTTGGAGCTGTCACATTAGCACCCAGACAAGTGTTCACTTCAGT  500

seq1  TTGAGGCCTTCTAACACATGGGAAGACCTGAGAGATCACATAGTGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCTTCTAACACATGGGAAGACCTGAGAGATCACATAGTGCAGAA  550

seq1  ATGGCCTCTTCTGATGCCTAACCTTCCTCGTGGTGCAGCAGGGCTGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCTTCTGATGCCTAACCTTCCTCGTGGTGCAGCAGGGCTGGCCT  600

seq1  GGGTGCAAGTGTTAGCTCCTTCTCTTCGGCACATCAGTGTCGGTATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAAGTGTTAGCTCCTTCTCTTCGGCACATCAGTGTCGGTATGAGA  650

seq1  AACAGACTCCCTCCTCCCTGGAGATAGATTTGAGAGTTT-AAGTAGCCAG  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACAGACTCCCTCCTCCCTGGAGATAGATTTGAGAGTTTAAAGTAGCCAG  700

seq1  GACTCCTTGATCCAGAGGTCTAGACAGCCCTTGGCCATTCTCCCAAATGT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACTCCTTGATCCAGAGGTCTAGACAGCCCTTGGCCATTCT-CCAAATGT  749

seq1  CTACTGACCGGTGTCATTTGAACATGAAGGCACACAGCTACAATGGCCAG  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTACTGACCGGTGTCATTTGAACATGAAGGCACACAGCTAC-ATGGCCAG  798

seq1  TTGGTTGCTGAGGTCATTGGCAGTTGAAGGTAGGTACCACCTGTAGCTTT  849
      |||| ||||||||||| ||||||||||||||| |||||||||||||||||
seq2  TTGGGTGCTGAGGTCA-TGGCAGTTGAAGGTA-GTACCACCTGTAGCTTT  846

seq1  AGGCGCCAGAGACAGCGCTCC-TTGGCCCACCCTGACCTCTCCTCAC-TC  897
      ||||||||||||||||||||| |||||||| |||||||||| ||||| ||
seq2  AGGCGCCAGAGACAGCGCTCCTTTGGCCCATCCTGACCTCT-CTCACTTC  895

seq1  CGCAAGGTCTTCACTAGCTTTTAAGAAGAAAATCAAGAAGCAGGGTCCCT  947
      |||||||||||||||||||||||   |||||||| |||||||||||||||
seq2  CGCAAGGTCTTCACTAGCTTTTA--GAGAAAATC-AGAAGCAGGGTCCCT  942

seq1  AGAATTAACATCACTTTGCCCCGTTACACACCACATTGTGTTCTCTGCCA  997
      |||  | ||||||| ||||| ||||||||| |||||||||||||||| ||
seq2  AGA--TTACATCAC-TTGCCTCGTTACACA-CACATTGTGTTCTCTG-CA  987

seq1  TTTGAAGCCTTCATGGGCTCTTTAAGGAAGGAAAGGCTCAAGCTGAATGA  1047
      ||||||| ||||||||||||||| | | |||||| |||| ||||||||||
seq2  TTTGAAG-CTTCATGGGCTCTTTTAAGGAGGAAA-GCTC-AGCTGAATGA  1034

seq1  TGGTAAGTGGAAGAAACTGTCCTGGCTTTAATCCCAACAAGCCACTATGT  1097
      ||  | |||   || ||| |||||  ||||||||  ||||||||| ||| 
seq2  TGTAATGTG---GAGACT-TCCTGCTTTTAATCC--ACAAGCCAC-ATGC  1077

seq1  TGTATGGTTTCTCCATAAGAA  1118
      || |||||||||||| |||||
seq2  TGAATGGTTTCTCCACAAGAA  1098