BAC Information

Click to search

BAC

Clone NameB6Ng01-046M05
Chromosome18 (Build37)
Map Location 58,511,428 - 58,612,716
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046M05.bB6Ng01-046M05.g
ACCDH871828DH871829
length1,076523
definitionDH871828|Mus musculus domesticus DNA, BAC clone: B6Ng01-046M05, 5' end.DH871829|Mus musculus domesticus DNA, BAC clone: B6Ng01-046M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,511,428 - 58,512,512)(58,612,188 - 58,612,716)
sequence
gaattctcttaaatttggtgggttaaagtgaaaataaatacagcatttaa
tctttttcttcaatagttagcattattaaatttattttaaatcttcccaa
aatgtaagtgtcaaacaagcttgtaaggaggatcactctttacctctcta
gccattaggcgttttcctctgtaattgtagctactttcctaagcaataaa
aaaaaacccaaagccgtagcatctgtagatctagaaattatgaataaatt
atgaacaaggtccaacatgggttagcagagaccattatttatcagtatgt
ttcactctgcatgcataccagaaaagctatcagaagacaatgctgaattc
tgagattatttaatttgaggattgaccaaaggaacccctggtttgtcgct
gtcttttttacaaatttataatgagtcattagcaataaggttttcatata
tctcagcagctgattgtccttggacctgatgctgcccacttcgctttatg
ttggaagagcctagtgcattcaataacaatgaaagcaagtgatggagaac
ctggagatgcaccgaaatcagtaggaagttggttcccattgtcttctcag
gggcagaaaatgctttgtaaaataacgaaagcctcgcacattctaaagaa
aattaaatttgccaaaaagtataagatatctctacaatatggtgaaatac
ggaggtgaaaaagagcttggggaagaggttagagagagaagaatgtgaac
tatttaatcttaaattgtgtatacatagtttaatagacctttgcaaatga
agcttacgttcccctgctaagctttagaagatttttttagagggactgca
ttttatcccaaggcaggttaaccccacagtaatgatgatataaactattc
tgcaagggctatttttaggaaaataaaggcagtatttattccacatggtt
tgaaaatgaatgggaactcttaccctagtcccatcaagaattggcttaac
tgccaatgtaatactcttattggtcgtgatgtcatgcaagctgtttgagc
aaaagaacatcaagttctgttttgtg
atagccagtgtctcagaatggggaagcactgagctagcatagctgctgta
gctacagctgcatggctgacatttttaactttccaccccattcacactct
cattgagggctgcactcaacctagtattcaagcaggcaagcaagcaagca
agcaaacaaacaaacaatgacaaaagcccatgcccttgagaataagtaat
cacagattcactgtctttatctcaccaacaagaaaagcttgcagtttaca
cagcaaatactgcataagaggaaggaaggaaagggttcctgataggcctt
caaaagctttcaccatcctgataagcccaccaggctttccttatctagta
tagaaaggagcctcacttaaaagcaaaattgtgtctgtgttggaactaac
tatgctttctgtctggaatgttacttaagatttcctgtgtcgttctgttg
gtttctgtctctctgtctctctgtctctctctccctgtctctctctctct
ctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58511428_58512512
seq2: B6Ng01-046M05.b_46_1121

seq1  GAATTCTCTTAAATTTGGTGGGTTAAAGTGAAAATAAATACAGCATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAAATTTGGTGGGTTAAAGTGAAAATAAATACAGCATTTAA  50

seq1  TCTTTTTCTTCAATAGTTAGCATTATTAAATTTATTTTAAATCTTCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTCAATAGTTAGCATTATTAAATTTATTTTAAATCTTCCCAA  100

seq1  AATGTAAGTGTCAAACAAGCTTGTAAGGAGGATCACTCTTTACCTCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGTGTCAAACAAGCTTGTAAGGAGGATCACTCTTTACCTCTCTA  150

seq1  GCCATTAGGCGTTTTCCTCTGTAATTGTAGCTACTTTCCTAAGCAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAGGCGTTTTCCTCTGTAATTGTAGCTACTTTCCTAAGCAATAAA  200

seq1  AAAAAACCCAAAGCCGTAGCATCTGTAGATCTAGAAATTATGAATAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCAAAGCCGTAGCATCTGTAGATCTAGAAATTATGAATAAATT  250

seq1  ATGAACAAGGTCCAACATGGGTTAGCAGAGACCATTATTTATCAGTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAGGTCCAACATGGGTTAGCAGAGACCATTATTTATCAGTATGT  300

seq1  TTCACTCTGCATGCATACCAGAAAAGCTATCAGAAGACAATGCTGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTGCATGCATACCAGAAAAGCTATCAGAAGACAATGCTGAATTC  350

seq1  TGAGATTATTTAATTTGAGGATTGACCAAAGGAACCCCTGGTTTGTCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTATTTAATTTGAGGATTGACCAAAGGAACCCCTGGTTTGTCGCT  400

seq1  GTCTTTTTTACAAATTTATAATGAGTCATTAGCAATAAGGTTTTCATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTTACAAATTTATAATGAGTCATTAGCAATAAGGTTTTCATATA  450

seq1  TCTCAGCAGCTGATTGTCCTTGGACCTGATGCTGCCCACTTCGCTTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCAGCTGATTGTCCTTGGACCTGATGCTGCCCACTTCGCTTTATG  500

seq1  TTGGAAGAGCCTAGTGCATTCAATAACAATGAAAGCAAGTGATGGAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAGCCTAGTGCATTCAATAACAATGAAAGCAAGTGATGGAGAAC  550

seq1  CTGGAGATGCACCGAAATCAGTAGGAAGTTGGTTCCCATTGTCTTCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATGCACCGAAATCAGTAGGAAGTTGGTTCCCATTGTCTTCTCAG  600

seq1  GGGCAGAAAATGCTTTGTAAAATAACGAAAGCCTCGCACATTCTAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAAAATGCTTTGTAAAATAACGAAAGCCTCGCACATTCTAAAGAA  650

seq1  AATTAAATTTGCCAAAAAGTATAAGATATCTCTACAATATGGTGAAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTTGCCAAAAAGTATAAGATATCTCTACAATATGGTGAAATAC  700

seq1  GGAGGTGAAAAAGAGCTTGGGGAAGAGGTTAGAGAGAGAAGAATGTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGAAAAAGAGCTTGGGGAAGAGGTTAGAGAGAGAAGAATGTGAAC  750

seq1  TATTTAATCTTAAATTGTGTATACATAGTTTAATAGACCTTTGCAAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATCTTAAATTGTGTATACATAGTTTAATAGACCTTTGCAAATGA  800

seq1  AGCTTACGTTCCCCTGCTAAGCTTTAG-AGATTTTTTTAAGAGGGAACTG  849
      ||||||||||||||||||||||||||| |||||||||| |||||| ||||
seq2  AGCTTACGTTCCCCTGCTAAGCTTTAGAAGATTTTTTT-AGAGGG-ACTG  848

seq1  CA-TCTATCCCAAGGCAGGTTTAACCCACAGTAATGATGATATAAACTAA  898
      || | |||||||||||||||| | ||||||||||||||||||||||||| 
seq2  CATTTTATCCCAAGGCAGGTTAACCCCACAGTAATGATGATATAAACTAT  898

seq1  TCTGCAAGGGCTA-TATTAGGAAAATAAAGGCAGTA-TTATTCCACATGG  946
      ||||||||||||| | |||||||||||||||||||| |||||||||||||
seq2  TCTGCAAGGGCTATTTTTAGGAAAATAAAGGCAGTATTTATTCCACATGG  948

seq1  TTTGAAAATGAATGGAAACTCTAACCCTAGTCCCATCAAG-ATTGGCTTA  995
      ||||||||||||||| |||||| ||||||||||||||||| |||||||||
seq2  TTTGAAAATGAATGGGAACTCTTACCCTAGTCCCATCAAGAATTGGCTTA  998

seq1  ACTGCCAATGTAAATTACTCTTATTTGGTCGTTGATGTCCCATGCAAAGG  1045
      |||||||||||||  |||||||| ||||||| ||||||  |||||||  |
seq2  ACTGCCAATGTAA--TACTCTTA-TTGGTCG-TGATGT--CATGCAA--G  1040

seq1  CTGTTTGAGGCAAAAAGAGACAATCAAGTTCTGTTTTGTG  1085
      |||||||| |||||   |||  ||||||||||||||||||
seq2  CTGTTTGA-GCAAA---AGAACATCAAGTTCTGTTTTGTG  1076

seq1: chr18_58612188_58612716
seq2: B6Ng01-046M05.g_68_596 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGGGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGGGAGAGAGAGA  50

seq1  CAGAGAGACAGAGAGACAGAAACCAACAGAACGACACAGGAAATCTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACAGAGAGACAGAAACCAACAGAACGACACAGGAAATCTTAAG  100

seq1  TAACATTCCAGACAGAAAGCATAGTTAGTTCCAACACAGACACAATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCCAGACAGAAAGCATAGTTAGTTCCAACACAGACACAATTTTG  150

seq1  CTTTTAAGTGAGGCTCCTTTCTATACTAGATAAGGAAAGCCTGGTGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGTGAGGCTCCTTTCTATACTAGATAAGGAAAGCCTGGTGGGCT  200

seq1  TATCAGGATGGTGAAAGCTTTTGAAGGCCTATCAGGAACCCTTTCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGATGGTGAAAGCTTTTGAAGGCCTATCAGGAACCCTTTCCTTCC  250

seq1  TTCCTCTTATGCAGTATTTGCTGTGTAAACTGCAAGCTTTTCTTGTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTATGCAGTATTTGCTGTGTAAACTGCAAGCTTTTCTTGTTGGT  300

seq1  GAGATAAAGACAGTGAATCTGTGATTACTTATTCTCAAGGGCATGGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAGACAGTGAATCTGTGATTACTTATTCTCAAGGGCATGGGCTT  350

seq1  TTGTCATTGTTTGTTTGTTTGCTTGCTTGCTTGCTTGCCTGCTTGAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTGTTTGTTTGTTTGCTTGCTTGCTTGCTTGCCTGCTTGAATAC  400

seq1  TAGGTTGAGTGCAGCCCTCAATGAGAGTGTGAATGGGGTGGAAAGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGAGTGCAGCCCTCAATGAGAGTGTGAATGGGGTGGAAAGTTAAA  450

seq1  AATGTCAGCCATGCAGCTGTAGCTACAGCAGCTATGCTAGCTCAGTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGCCATGCAGCTGTAGCTACAGCAGCTATGCTAGCTCAGTGCTT  500

seq1  CCCCATTCTGAGACACTGGCTATGAATTC  529
      |||||||||||||||||||||||||||||
seq2  CCCCATTCTGAGACACTGGCTATGAATTC  529