BAC Information

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BAC

Clone NameB6Ng01-047J19
Chromosome18 (Build37)
Map Location 26,067,619 - 26,226,563
singlet/doubletdoublet
Overlap geneLOC100041274
Upstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047J19.bB6Ng01-047J19.g
ACCDH872427DH872428
length1,021368
definitionDH872427|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J19, 5' end.DH872428|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,067,619 - 26,068,661)(26,226,190 - 26,226,563)
sequence
gaattcaagcaagccagccacattggggttttctttattgtagttctggt
catttccctcctctttgattttcctgttttttacactgggatttcatgtt
cttggtgcagcaatgacccagcagatggatttcctaagaaagattccagt
cctagggcagaaaacagatggcacctatggaaaggatcctgagagagaga
gagagagagagagagagtcagagagacacagagagacacagagagacaga
gagaaagagacacagagagacacagagagacacagagagagacacagaga
gagaaacagagactgagagactgacagagagagacagacagagagaacag
gtttctcccattataggtacttgacctatatgtttagtttttctttaatc
ccagggaggataaaaaagatggaaaaatgaaaagaattaaggggttgagg
gaagatggcagccaaagaacggaagtaagggaaaaagtggacagggccct
acaacctagttgaggggcctacaattcaagttgagatcgacaataattta
aaaaactaagcaagttgttttctccttttcctaaggacatgagcctcata
tacctaacctatgcaatgagatacacacatttgtggtgtgaaaggtcttc
ctcaagaccagcatccattgcctttacaactttgcctttgatcataccca
catttgatctacttttcaatttctgaccatcttgtgcattgatcttaatg
atttctccggcctctgtcgaacccatcaggaaacatctcagatttcccag
atatcactcatttccttgaaggagagaatgactaacctccccatctcacc
ctgcacaggaactgcgaattactttaatacaagcacagatgggactgtgt
ttgaaatgatcagaatgatttgtgtcactgtcctatatctattagtgcat
tagacaaatgctgtagacttcccatctacatgagtttgggtgagatcagc
accactatgcagttgtctgtc
tgtggtgcagctggggattcagccacagtgcagaaaatgcagaggaaaga
agccttattcaccagtatttgtttgcctaggtacttctccagtgtacagg
gtaatacaagcaaccagggctgtggagtcttgcctagaagagaaggaaag
ggctaaatactaaattaatcacttgctaaaaacttcttccttctgcctaa
gtttttgggacactaagtatatatgggaaaataaatctctctctctctct
ctctctctctctctctctctctctctctctctctctctctctctctatct
gtgaacttcctcttgtgtgtgtgtatgtgtgtctatttctgtttgtctga
gtgagatctccctagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_26067619_26068661
seq2: B6Ng01-047J19.b_41_1061

seq1  GAATTCAAGCAAGCCAGCCACATTGGGGTTTTCTTTATTGTAGTTCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAAGCCAGCCACATTGGGGTTTTCTTTATTGTAGTTCTGGT  50

seq1  CATTTCCCTCCTCTTTGATTTTCCTGTTTTTTACACTGGGATTTCATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTCCTCTTTGATTTTCCTGTTTTTTACACTGGGATTTCATGTT  100

seq1  CTTGGTGCAGCAATGACCCAGCAGATGGATTTCCTAAGAAAGATTCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGCAGCAATGACCCAGCAGATGGATTTCCTAAGAAAGATTCCAGT  150

seq1  CCTAGGGCAGAAAACAGATGGCACCTATGGAAAGGATCCTGAGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGCAGAAAACAGATGGCACCTATGGAAAGGATCCTGAGAGAGAGA  200

seq1  GAGAGAGAGAGAGAGAGTCAGAGAGACACAGAGAGACACAGAGAGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGTCAGAGAGACACAGAGAGACACAGAGAGACAGA  250

seq1  GAGAAAGAGACACAGAGAGACACAGAGAGACACAGAGAGAGACACAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGACACAGAGAGACACAGAGAGACACAGAGAGAGACACAGAGA  300

seq1  GAGAAACAGAGACTGAGAGACTGACAGAGAGAGACAGACAGAGAGAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAGAGACTGAGAGACTGACAGAGAGAGACAGACAGAGAGAACAG  350

seq1  GTTTCTCCCATTATAGGTACTTGACCTATATGTTTAGTTTTTCTTTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCCATTATAGGTACTTGACCTATATGTTTAGTTTTTCTTTAATC  400

seq1  CCAGGGAGGATAAAAAAGATGGAAAAATGAAAAGAATTAAGGGGTTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGGATAAAAAAGATGGAAAAATGAAAAGAATTAAGGGGTTGAGG  450

seq1  GAAGATGGCAGCCAAAGAACGGAAGTAAGGGAAAAAGTGGACAGGGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGCAGCCAAAGAACGGAAGTAAGGGAAAAAGTGGACAGGGCCCT  500

seq1  ACAACCTAGTTGAGGGGCCTACAATTCAAGTTGAGATCGACAATAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTAGTTGAGGGGCCTACAATTCAAGTTGAGATCGACAATAATTTA  550

seq1  AAAAACTAAGCAAGTTGTTTTCTCCTTTTCCTAAGGACATGAGCCTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAAGCAAGTTGTTTTCTCCTTTTCCTAAGGACATGAGCCTCATA  600

seq1  TACCTAACCTATGCAATGAGATACACACATTTGTGGTGTGAAAGGTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAACCTATGCAATGAGATACACACATTTGTGGTGTGAAAGGTCTTC  650

seq1  CTCAAGACCAGCATCCATTGCCTTTACAACTTTGCCTTTGATCATACGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCAAGACCAGCATCCATTGCCTTTACAACTTTGCCTTTGATCATACCCA  700

seq1  CATTTGATCTACTTTTCAATTTCTGACCATCTTGTGCATTGATCTTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATCTACTTTTCAATTTCTGACCATCTTGTGCATTGATCTTAATG  750

seq1  ATTTCTCCGGCCTCTGTCGAACCCATCAGGAAACATCTCAGGATTTCCCA  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTTCTCCGGCCTCTGTCGAACCCATCAGGAAACATCTCA-GATTTCCCA  799

seq1  GATATCACTCATTTCCTTGAAGGAAGAGAATGACTAACCCTCCCCATTCT  850
      ||||||||||||||||||||||| ||||||||||||| |||||||| |||
seq2  GATATCACTCATTTCCTTGAAGG-AGAGAATGACTAA-CCTCCCCA-TCT  846

seq1  CACCCTGCACAGGAACTGCGAATTACTTTTAAATACAAGCACAGATGGGA  900
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CACCCTGCACAGGAACTGCGAATTACTTT--AATACAAGCACAGATGGGA  894

seq1  CTGTGTTTTGAAATGATCAGGAATGATTTTGTTGTCACTGTTCCTTATTA  950
      ||||| ||||||||||||| |||||||||   ||||||||| |  ||   
seq2  CTGTG-TTTGAAATGATCA-GAATGATTT--GTGTCACTGTCCTATA---  937

seq1  TTCTAATAAGTGGCATTAGACAAAATGCCTGTAGAATTTCCCATTCTACC  1000
       ||| || ||| ||||||||| ||||| |||||| | |||||| |||| |
seq2  -TCT-ATTAGT-GCATTAGAC-AAATG-CTGTAG-ACTTCCCA-TCTA-C  979

seq1  ATGAGTATGGGTGAAGATCAGCACCACTATGCAGTTGTCTGTC  1043
      |||||| |||||| |||||||||||||||||||||||||||||
seq2  ATGAGTTTGGGTG-AGATCAGCACCACTATGCAGTTGTCTGTC  1021

seq1: chr18_26226190_26226563
seq2: B6Ng01-047J19.g_67_440 (reverse)

seq1  TTTCTAGGGAAAATACACACAGAGAAACAGAAATAGATACAGATACATAC  50
      |||||||||| |   ||| |||| ||||||||||||| ||| ||||| ||
seq2  TTTCTAGGGAGATCTCACTCAGACAAACAGAAATAGACACACATACACAC  50

seq1  ATACAAGGGGAAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100
      | ||||| |||||   | ||| ||||||||||||||||||||||||||||
seq2  ACACAAGAGGAAGTTCACAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTATTTTCCCATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTATTTTCCCATATAT  150

seq1  ACTTAGTGTCCCAAAAACTTAGGCAGAAGGAAGAAGTTTTTAGCAAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTGTCCCAAAAACTTAGGCAGAAGGAAGAAGTTTTTAGCAAGTGA  200

seq1  TTAATTTAGTATTTAGCCCTTTCCTTCTCTTCTAGGCAAGACTCCACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAGTATTTAGCCCTTTCCTTCTCTTCTAGGCAAGACTCCACAGC  250

seq1  CCTGGTTGCTTGTATTACCCTGTACACTGGAGAAGTACCTAGGCAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGCTTGTATTACCCTGTACACTGGAGAAGTACCTAGGCAAACAA  300

seq1  ATACTGGTGAATAAGGCTTCTTTCCTCTGCATTTTCTGCACTGTGGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGTGAATAAGGCTTCTTTCCTCTGCATTTTCTGCACTGTGGCTGA  350

seq1  ATCCCCAGCTGCACCACAGAATTC  374
      ||||||||||||||||||||||||
seq2  ATCCCCAGCTGCACCACAGAATTC  374