BAC Information

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BAC

Clone NameB6Ng01-048L11
Chromosome3 (Build37)18 (Build37)
Map Location 41,058,837 - 41,059,39715,434,400 - 15,435,502
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L11.bB6Ng01-048L11.g
ACCDH873192DH873193
length9581,083
definitionDH873192|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L11, 5' end.DH873193|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,837 - 41,059,397)(15,434,400 - 15,435,502)
sequence
gaattccttgatccacttagatttgaccttagtacaaggagataggaatg
gatcaattcgcattcttcttcatgataactgccagttgtggcagcaccat
ttgttgaagatgctgtcttttttccatgggatggtttttttgctcccttg
tcaaagatcaagtgaccataggtgtgtgggtttatttctgggtcttcaat
tctattccattggtctacttgtctgtcactataccagtaccatgcagttt
ttatcacaattgctctgtagtacagctttaggtcaggcatggtgattcca
ccagaggttcttttatccttgagaagattttttgctgtcctaggtttttt
gttattccagatgaatttgcagattgctctttctaattccttgaagaatt
gagttggaattttgatgaggattgcattgaatctgtagattgcttttgca
agataacgatttttactatattgatcctgccaatccatgagcatgtgaga
tctttccatcttctgagatcttctttaatttctttctttagagacttcaa
gttcttatcatacagatctttcacttctttgttagagtcatgccaaggta
ttttatattgtttgtgactattgagaagggtgttgtttccctaatttctt
cctcagcctgtttatcctttgtgtacaagaagaccattgacttgtctgag
ttaattttatatccagctacttcattgaagctgtttatcaggcttaggag
ttctctggtggaatttttagggtcacttatatatactatcatatcatctg
caaaaagtgatatttttacttcttctttccaattcgtatcccctagatct
ccttttgttgtttaattgctctggctaggacttcaagtacaatgttgaat
aggtagggagaagtaggcagtcttgtctagtccctgatttagtgtgattg
cttcagct
gaattcagtggattttcaagacatacttatatttaatgaattaacaataa
aaggagaagtaaggacaaaaactgttacattttacttatctgactccaag
gagacataggattcctgaattcttttttaaaaaatactttgcttactggc
atggtggcacacacttttaataccagcacttgggagaaagaggcaggcag
aactctgaagccagcctggtcttcagagtgtgttctagaacatccagggc
tacacagagaaacccagcctggagaaaccaaaatacatacatacatacat
acatacatacatacatacatacatacaataaaaacagtttacaatacttg
tgatcacaatatttgaaatgtacttatttcagattagatgcttgtgatat
gatgcagctattgtgtagctatgggcgatgctccaagggatctgttctct
tcatgggcatctgtaatccatccccctctctctctttcctttttctcttc
cccctctctcctttccttcttttctttctctttttaagttaaaatcttct
tatgtagcccaggctatccttaaattcagatcctcctgcttttgtttcct
tatgtgagcttataaatgtgtgacactgtcttagtcagggtttctattcc
tgcacaaacatcatgaccaagaagcaagttggggaggaaagggtttactc
ggcttacacttccatgctgctgttcatcaccaaaggaagtcacgactgga
actcaagcaggtcaggagcaggagctgatgaagaagccatggaggaatgt
tctttactagcttgcctcacctggcttgctcagcctgctctcttatagaa
ccaagactaccagcccagagatggctcaacccacaaggggcctttcccct
tgatcactaattgagaaatgcttacagtggatctcatgaggcatttctca
ctgagctctttctctgtgataactcagctgtgtaagtgacacaaactagc
agtacagacactatgtgcatcgagagataaaaatattcatgaaagacagc
agatcagggttagtcagcgtgtctgccacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058837_41059397
seq2: B6Ng01-048L11.b_50_611 (reverse)

seq1  CTGTATGACAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCT  50
      |||||||| |||||||| |||||||| |||||||||||||||||||||||
seq2  CTGTATGATAAGAACTTGAAGTCTCTAAAGAAAGAAATTAAAGAAGATCT  50

seq1  CAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTG  100
      ||||||||||||||||||| ||||||||||||||||||||||||| || |
seq2  CAGAAGATGGAAAGATCTCACATGCTCATGGATTGGCAGGATCAATATAG  100

seq1  TAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCC  150
      ||||||| | ||||||| |||||||||||||||||||||||||||||| |
seq2  TAAAAATCGTTATCTTG-CAAAAGCAATCTACAGATTCAATGCAATCCTC  149

seq1  ATCAAAATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAATCTGCAA  200
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  ATCAAAATTCCAACTCAATTCTTCAAGGAATTAGAAAGAGCAATCTGCAA  199

seq1  ATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGG  250
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  ATTCATCTGGAATAACAAAAAACCTAGGACAGCAAAAAATCTTCTCAAGG  249

seq1  ATAACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTAC  300
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTAC  299

seq1  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGT  349

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  400
      ||||||||||||||||||||||||| ||||||  || |||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATAAACCCACACACCTATG  399

seq1  GTCACTTGATCTTCGACAAGGGAGC--TAAAACCATCCAGTGGAAAAAAG  448
      ||||||||||||| |||||||||||   ||||||||||  ||||||||||
seq2  GTCACTTGATCTTTGACAAGGGAGCAAAAAAACCATCCCATGGAAAAAAG  449

seq1  ACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGA  498
      ||||||| ||||||||||||||||| |||||||||  ||||||||| |||
seq2  ACAGCATCTTCAACAAATGGTGCTGCCACAACTGGCAGTTATCATGAAGA  499

seq1  AGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAA  548
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAATGCGAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAA  549

seq1  GTGGATCAAGGAA  561
      |||||||||||||
seq2  GTGGATCAAGGAA  562

seq1: chr18_15434400_15435502
seq2: B6Ng01-048L11.g_68_1150

seq1  GAATTCAGTGGATTTTCAAGACATACTTATATTTAATGAATTAACAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGATTTTCAAGACATACTTATATTTAATGAATTAACAATAA  50

seq1  AAGGAGAAGTAAGGACAAAAACTGTTACATTTTACTTATCTGACTCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGTAAGGACAAAAACTGTTACATTTTACTTATCTGACTCCAAG  100

seq1  GAGACATAGGATTCCTGAATTCTTTTTTAAAAAATACTTTGCTTACTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAGGATTCCTGAATTCTTTTTTAAAAAATACTTTGCTTACTGGC  150

seq1  ATGGTGGCACACACTTTTAATACCAGCACTTGGGAGAAAGAGGCAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCACACACTTTTAATACCAGCACTTGGGAGAAAGAGGCAGGCAG  200

seq1  AACTCTGAAGCCAGCCTGGTCTTCAGAGTGTGTTCTAGAACATCCAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAAGCCAGCCTGGTCTTCAGAGTGTGTTCTAGAACATCCAGGGC  250

seq1  TACACAGAGAAACCCAGCCTGGAGAAACCAAAATACATACATACATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCAGCCTGGAGAAACCAAAATACATACATACATACAT  300

seq1  ACATACATACATACATACATACATACAATAAAAACAGTTTACAATACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATACATACATACATACAATAAAAACAGTTTACAATACTTG  350

seq1  TGATCACAATATTTGAAATGTACTTATTTCAGATTAGATGCTTGTGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACAATATTTGAAATGTACTTATTTCAGATTAGATGCTTGTGATAT  400

seq1  GATGCAGCTATTGTGTAGCTATGGGCGATGCTCCAAGGGATCTGTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGCTATTGTGTAGCTATGGGCGATGCTCCAAGGGATCTGTTCTCT  450

seq1  TCATGGGCATCTGTAATCCATCCCCCTCTCTCTCTTTCCTTTTTCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCATCTGTAATCCATCCCCCTCTCTCTCTTTCCTTTTTCTCTTC  500

seq1  CCCCTCTCTCCTTTCCTTCTTTTCTTTCTCTTTTTAAGTTAAAATCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTCCTTTCCTTCTTTTCTTTCTCTTTTTAAGTTAAAATCTTCT  550

seq1  TATGTAGCCCAGGCTATCCTTAAATTCAGATCCTCCTGCTTTTGTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCCCAGGCTATCCTTAAATTCAGATCCTCCTGCTTTTGTTTCCT  600

seq1  TATGTGAGCTTATAAATGTGTGACACTGTCTTAGTCAGGGTTTCTATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGCTTATAAATGTGTGACACTGTCTTAGTCAGGGTTTCTATTCC  650

seq1  TGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTACTC  700

seq1  GGCTTACACTTCCATGCTGCTGTTCATCACCAAAGGAAGTCAGGACTGGA  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCTTACACTTCCATGCTGCTGTTCATCACCAAAGGAAGTCACGACTGGA  750

seq1  ACTCAAGCAGGTCAGGGAGCAGGAGCTGATGAAGAAGCCATGGAGGAATG  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCAGGTCA-GGAGCAGGAGCTGATGAAGAAGCCATGGAGGAATG  799

seq1  TTCTTTACTAGCTTGCCTCACCTGGCTTGCTCAGCCTGCTCTCTTATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACTAGCTTGCCTCACCTGGCTTGCTCAGCCTGCTCTCTTATAGA  849

seq1  ACCAAGACTACCAGCCCAGAGATGGCTCCACCCACAAGGGGCCTTTCCCC  900
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  ACCAAGACTACCAGCCCAGAGATGGCTCAACCCACAAGGGGCCTTT-CCC  898

seq1  CTTGATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCAT  950
      ||||||||||||||||| ||||| ||||||| |||||||||| |||||||
seq2  CTTGATCACTAATTGAG-AAATG-CTTACAG-TGGATCTCAT-GAGGCAT  944

seq1  TTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTAAAGTT  1000
      || ||| |||| |||| ||||||||||||||||| |||||||||||   |
seq2  TT-CTC-ACTG-AGCT-CTTTCTCTGTGATAACT-CAGCTGTGTAA--GT  987

seq1  GACACAAAACTAGCCAGTACAGACACTATGTGCATCCGAGAGAT-AAAAT  1049
      ||||| ||||||| ||||||||||||||||||||| |||||||| |||||
seq2  GACAC-AAACTAG-CAGTACAGACACTATGTGCAT-CGAGAGATAAAAAT  1034

seq1  ATTCATGAGAGACAGCAGATCCAGGGTTAGTCAGCAGTTGGTCTGCACAC  1099
      |||||||| ||||||||||| |||||||||||||| ||  |||||| |||
seq2  ATTCATGAAAGACAGCAGAT-CAGGGTTAGTCAGC-GT--GTCTGC-CAC  1079

seq1  AGAA  1103
      ||||
seq2  AGAA  1083