BAC Information

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BAC

Clone NameB6Ng01-049A23
Chromosome18 (Build37)
Map Location 51,284,865 - 51,319,255
singlet/doubletdoublet
Overlap genePrr16
Upstream geneHsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
Downstream geneEG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049A23.bB6Ng01-049A23.g
ACCDH873430DH873431
length2491,055
definitionDH873430|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A23, 5' end.DH873431|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,319,007 - 51,319,255)(51,284,865 - 51,285,937)
sequence
gaattctatgctgagtgttcacagtagacatcctgctgtacttttcttgc
tagacagcaatctctgaataccttagctaagttttcatagaaaatctacc
tacgaacttattattgttttaatcctagagcttttcccactatcatatat
atatatatatggtgggggtgttttatatagatatttagatagacatagac
aaggagatacatacagatatattataaagacaattttatatttcacgtg
gaattcctaatcaggcaaaaaaagagtatagagttgattgatgataacag
gtgtattattgtggattcgtgataacgtatatattgtttttgattgattt
tagtgtgtgtattgttgttgattcatgataacttgtgtgtttttgtgtcc
atagatgtgagcctttcacttttctagcatgttaaaaacagaaaaatcaa
gaaatagcctgactttgaaatcctggttgtttcctttctggtgtgatatg
agaaaacacattttattatattgaaaggtcattgggaaaaactactctaa
atgagtatttcctgtatgatctagaaggctaaagtcagtgatatcatcgc
taaacaagagccagaatctaatatttactgaaatgaaaagataaaacctt
atctgatgaatgcccaaatcagaatacactcacgaggtggcctgccaact
gaggacaaatgttgccttatattgcatgagttaggctgtgtatttatgca
tttattgtctgaagatggaaagataggaggtctcaaagtaattaaactcc
aagatctcactttcagggtaaaaaacagggaataatgtaagcatagggac
atttacttatgggtccttggtcactccttctcgaactggtgcaaagggct
acttcagggtacttgcttaagacattttaatttttttttatgtgtaggat
aattggaatgactcaaattatatgtgtattttcaatgcactgttatcatg
aaattcgtccagcataagtagaattttttcactgggaatacgtatgctta
tctgcaagaagaaaatttaatgattcctaacaggttggcttcctctagca
cgtgacaaaggtaacaaaacacctgtgtgtcagctttctttccacacact
gaaatctatcacaagctttcaactacacgtatatgacagaaaaatgccag
ttcagtacactgaccagtcaattttctttcatgtcagtgttctagtcatt
gctacatcacaccttaacaatgtttaataagggaatattttcctggacaa
ctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51319007_51319255
seq2: B6Ng01-049A23.b_43_291 (reverse)

seq1  CACGTGAAATATAAAATTGTCTTTAAAATATATCTGTATGTATATACTTG  50
      ||||||||||||||||||||||||| ||||||||||||||||| | ||||
seq2  CACGTGAAATATAAAATTGTCTTTATAATATATCTGTATGTATCTCCTTG  50

seq1  TCTATGTCTATCTAAATATCTATATAAAACACCCCCACCATATATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCTATCTAAATATCTATATAAAACACCCCCACCATATATATATA  100

seq1  TATATGATAGTGGGAAAAGCTCTAGGATTAAAACAATAATAAGTTCGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATAGTGGGAAAAGCTCTAGGATTAAAACAATAATAAGTTCGTAG  150

seq1  GTAGATTTTCTATGAAAACTTAGCTAAGGTATTCAGAGATTGCTGTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTTCTATGAAAACTTAGCTAAGGTATTCAGAGATTGCTGTCTAG  200

seq1  CAAGAAAAGTACAGCAGGATGTCTACTGTGAACACTCAGCATAGAATTC  249
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAGTACAGCAGGATGTCTACTGTGAACACTCAGCATAGAATTC  249

seq1: chr18_51284865_51285937
seq2: B6Ng01-049A23.g_64_1118

seq1  GAATTCCTAATCAGGCAAAAAAAGAGTATAGAGTTGATTGATGATAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATCAGGCAAAAAAAGAGTATAGAGTTGATTGATGATAACAG  50

seq1  GTGTATTATTGTGGATTCGTGATAACGTATATATTGTTTTTGATTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTATTGTGGATTCGTGATAACGTATATATTGTTTTTGATTGATTT  100

seq1  TAGTGTGTGTATTGTTGTTGATTCATGATAACTTGTGTGTTTTTGTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTGTATTGTTGTTGATTCATGATAACTTGTGTGTTTTTGTGTCC  150

seq1  ATAGATGTGAGCCTTTCACTTTTCTAGCATGTTAAAAACAGAAAAATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTGAGCCTTTCACTTTTCTAGCATGTTAAAAACAGAAAAATCAA  200

seq1  GAAATAGCCTGACTTTGAAATCCTGGTTGTTTCCTTTCTGGTGTGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCCTGACTTTGAAATCCTGGTTGTTTCCTTTCTGGTGTGATATG  250

seq1  AGAAAACACATTTTATTATATTGAAAGGTCATTGGGAAAAACTACTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACATTTTATTATATTGAAAGGTCATTGGGAAAAACTACTCTAA  300

seq1  ATGAGTATTTCCTGTATGATCTAGAAGGCTAAAGTCAGTGATATCATCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATTTCCTGTATGATCTAGAAGGCTAAAGTCAGTGATATCATCGC  350

seq1  TAAACAAGAGCCAGAATCTAATATTTACTGAAATGAAAAGATAAAACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGAGCCAGAATCTAATATTTACTGAAATGAAAAGATAAAACCTT  400

seq1  ATCTGATGAATGCCCAAATCAGAATACACTCACGAGGTGGCCTGCCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGAATGCCCAAATCAGAATACACTCACGAGGTGGCCTGCCAACT  450

seq1  GAGGACAAATGTTGCCTTATATTGCATGAGTTAGGCTGTGTATTTATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAATGTTGCCTTATATTGCATGAGTTAGGCTGTGTATTTATGCA  500

seq1  TTTATTGTCTGAAGATGGAAAGATAGGAGGTCTCAAAGTAATTAAACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTCTGAAGATGGAAAGATAGGAGGTCTCAAAGTAATTAAACTCC  550

seq1  AAGATCTCACTTTCA-GGTAAAAAACA-GGAATAATGTAAGCATA-GGAC  597
      ||||||||||||||| ||||||||||| ||||||||||||||||| ||||
seq2  AAGATCTCACTTTCAGGGTAAAAAACAGGGAATAATGTAAGCATAGGGAC  600

seq1  ATTTACTTAT-GGTCCTT-GTCACT-CTTCTCGAACT-GTGCAAA-GGCT  642
      |||||||||| ||||||| |||||| ||||||||||| ||||||| ||||
seq2  ATTTACTTATGGGTCCTTGGTCACTCCTTCTCGAACTGGTGCAAAGGGCT  650

seq1  AC-TCA-GGTAC-TGCTTAAGGACATTTTATTTTTTTTTTATGTGTAGGA  689
      || ||| ||||| ||||||| ||||||||| |||||||||||||||||||
seq2  ACTTCAGGGTACTTGCTTAA-GACATTTTAATTTTTTTTTATGTGTAGGA  699

seq1  TAATTGGAATGACTCAGATTATATGTGTATTTTCAATTGCACTGTTATCA  739
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  TAATTGGAATGACTCAAATTATATGTGTATTTTCAA-TGCACTGTTATCA  748

seq1  TGATACTCGTCACAGCATAAGTAG-ATTTTTTCACTGTGGATAACGTATG  788
      ||| | ||||| |||||||||||| |||||||||||| |||  |||||||
seq2  TGAAATTCGTC-CAGCATAAGTAGAATTTTTTCACTG-GGAATACGTATG  796

seq1  CTTATCTGCAAGAAGAAAATTTAATGATTCCTAACAGGTTTGGCTTCCTC  838
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTATCTGCAAGAAGAAAATTTAATGATTCCTAACAGG-TTGGCTTCCTC  845

seq1  TAGCACTGTGACAAAGGTTAGCAGATACACTGATGTG-CAGCTTTCCTTT  887
      |||||| |||||||||| || || | ||||   |||| ||||||||  ||
seq2  TAGCAC-GTGACAAAGG-TAACA-AAACACCTGTGTGTCAGCTTTC--TT  890

seq1  TCCACAACACTGAAATCTTATCACAAGCTTTCAAACTACCACGTATATGA  937
      ||||| ||||||||||| |||||||||||||| ||||| |||||||||||
seq2  TCCAC-ACACTGAAATC-TATCACAAGCTTTC-AACTA-CACGTATATGA  936

seq1  CAGAAAAATGCCAAGTTCAGTAGCACTGACCAAGTCAATTTTCTTTCAAT  987
      |||||||||||| ||||||||| |||||||| ||||||||||||||| ||
seq2  CAGAAAAATGCC-AGTTCAGTA-CACTGACC-AGTCAATTTTCTTTC-AT  982

seq1  GTCAGTGGTTCTTAGTCATTGCTACATACCACACTCTAAACAAATGTTTA  1037
      |||||| |||| |||||||||||||||  ||||| || ||| ||||||||
seq2  GTCAGT-GTTC-TAGTCATTGCTACAT--CACAC-CTTAAC-AATGTTTA  1026

seq1  AAATAGGGGATATTTTTTTCCTGGAACCAAACTCAG  1073
      | | |||| |||   ||||||||||    |||||||
seq2  ATA-AGGGAATA---TTTTCCTGGA---CAACTCAG  1055