BAC Information

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BAC

Clone NameB6Ng01-049B15
Chromosome18 (Build37)18 (Build37)
Map Location 42,015,830 - 42,016,92769,291,390 - 69,291,732
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC677182, LOC100041988, LOC100041997
Downstream genePrelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049B15.bB6Ng01-049B15.g
ACCDH873460DH873461
length1,090571
definitionDH873460|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B15, 5' end.DH873461|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,015,830 - 42,016,927)(69,291,390 - 69,291,732)
sequence
gaattcaaatttgttcatcacatctacaactatcgatcctctcagtgtgc
acctagcttgaccggagccttgagagacgaggatggtttttggaacttag
agagtttttccatagatttcatgatcactcccgcatcatttatgagtccc
ctctgctcacaggtgtgcacctgctcctcccccacctcattgccttatag
tgtttgtcaacagataccttacccaggtctacagaagatggagaactaaa
acaacccacagctcacttagtacatcaccacctcatccattcaaacagaa
atatcttcttaaaaagatgggtctgggtcaccttccctcattttataaat
cttaagcaatttgctgggttgttgtttttctattttttgtaaatacatga
ggctagtggccactgcatttagtattgagctgtttgttctttggtaagtg
ttggagaccataccgtgagaaagtaagcctttctcagtttcccaccctaa
taagccaaatggccttgtgttaaggagctggttgcctcctcctccctatc
tcttcctggcaccagagaccctaaaagctgaattatagtcccctcttcct
tatctcttcctgactcccaagactttcaaggacatgagttatgtgatgag
cccagcctgacacccaaggctgttaaggaggatccaaattctggagataa
gatgcagagtgcccgaggcctggagcctgacttcgccttcatgtctccag
atgcccacttctttgttctttgttaattccccctcaacccctccctattc
ctctcactgtatgcttaaaacccggccagcctaataaactgagaccttga
taggaactctccactccttctttctctccctcccattttctcccaggttt
gtggtccccctcgcaccacgaataactgagtcctgctggacggacagtaa
gtcaaattttcccaatgaatactggatttttttttttttttcatctgaaa
taaagcaagttgaccgctttaagagccaagatgatattctatatggtatt
ttatggattatttggggagttcacatatggacctgataac
atcccatatacagccaccaaacccagaagctattgtggatgccgggaagt
gcttgctgatggaagcctgagatggctgtctcctgagaggctctgccaga
tcctgacaaatacagaagcagccaaccattggactgagcactggggagat
ggcccttgggcctgagggtgtttgatgccagggcaaaaagacgggaatgg
ctgggtgggtgggtgagtagggggaagagagagagagagggagaaagaga
gaaagaaaggaagaaactcaaggagttgtactctttaaaggcgctaagag
caagaagccaatgaaagtatctggcacattaaaaataataatattaatga
tagcatcagtggccaggcaagaagttccctcctgcgttttaaaggtgggg
gggggattgcttacatcccgttgggcacttctgcacgcttttctttgtga
gctggttgtggctggaagcctacaggtgatagccattactttcagctatt
aactttcaggaacactcccagctttcagcatactggaggttcgggctgcc
agatctttgcacttgaaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42015830_42016927
seq2: B6Ng01-049B15.b_41_1130 (reverse)

seq1  GTGATCAGGTACACTATGTGAAACTCCCAAATAATCCATAAAAATATCAT  50
      || ||||||| || ||||||||   |||||||||||||| |||||| |||
seq2  GTTATCAGGTCCA-TATGTGAACTCCCCAAATAATCCAT-AAAATACCAT  48

seq1  ATAAGAATATCATCTTTGCTCTTTAAAGCTGTCAACTTGCTTTATCTCAA  100
      || ||||||||||||| |||| ||||||| ||||||||||||||| || |
seq2  AT-AGAATATCATCTTGGCTC-TTAAAGCGGTCAACTTGCTTTATTTC-A  95

seq1  GATGAAAAAAAAAAAAAAATCCAGTATTCATTGAGAAAATATGACTTACC  150
      ||||||||||||||||||||||||||||||||| |||||| ||||||| |
seq2  GATGAAAAAAAAAAAAAAATCCAGTATTCATTGGGAAAATTTGACTTA-C  144

seq1  TGTCCCGTCCAGCAGGACTCAGTTATTCGTGGTGCGAGGGGGACCACAAA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGT-CCGTCCAGCAGGACTCAGTTATTCGTGGTGCGAGGGGGACCACAAA  193

seq1  CCTGGGAGAAAATGGGAGGGAGAGAAAGAAGGAGTGGAGAGTTCCTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGAAAATGGGAGGGAGAGAAAGAAGGAGTGGAGAGTTCCTATCA  243

seq1  AGGTCTCAGTTTATTAGGCTGGCCGGGTTTTAAGCATACAGTGAGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCAGTTTATTAGGCTGGCCGGGTTTTAAGCATACAGTGAGAGGAA  293

seq1  TAGGGAGGGGTTGAGGGGGAATTAACAAAGAACAAAGAAGTGGGCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGGGGTTGAGGGGGAATTAACAAAGAACAAAGAAGTGGGCATCTG  343

seq1  GAGACATGAAGGCCGAAGTCAGGCTCCAGGCCTCGGGCACTCTGCATCTT  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGACATGAAGG-CGAAGTCAGGCTCCAGGCCTCGGGCACTCTGCATCTT  392

seq1  ATCTCCAGAATTTGGATCCTCCTTAACAGCCTTGGGTGTCAGGCTGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGAATTTGGATCCTCCTTAACAGCCTTGGGTGTCAGGCTGGGCT  442

seq1  CATCACATAACTCATGTCCTTGAAAGTCTTGGGAGTCAGGAAGAGATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATAACTCATGTCCTTGAAAGTCTTGGGAGTCAGGAAGAGATAAG  492

seq1  GAAGAGGGGACTATAATTCAGCTTTTAGGGTCTCTGGTGCCAGGAAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGGACTATAATTCAGCTTTTAGGGTCTCTGGTGCCAGGAAGAGA  542

seq1  TAGGGAGGAGGAGGCAACCAGCTCCTTAACACAAGGCCATTTGGCTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGGAGGAGGCAACCAGCTCCTTAACACAAGGCCATTTGGCTTATT  592

seq1  AGGGTGGGAAACTGAGAAAGGCTTACTTTCTCACGGTATGGTCTCCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGAAACTGAGAAAGGCTTACTTTCTCACGGTATGGTCTCCAACA  642

seq1  CTTACCAAAGAACAAACAGCTCAATACTAAATGCAGTGGCCACTAGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAAAGAACAAACAGCTCAATACTAAATGCAGTGGCCACTAGCCTC  692

seq1  ATGTATTTACAAAAAATAGAAAAACAACAACCCAGCAAATTGCTTAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTACAAAAAATAGAAAAACAACAACCCAGCAAATTGCTTAAGAT  742

seq1  TTATAAAATGAGGGAAGGTGACCCAGACCCATCTTTTTAAGAAGATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATGAGGGAAGGTGACCCAGACCCATCTTTTTAAGAAGATATTT  792

seq1  CTGTTTGAATGGATGAGGTGGTGATGTACTAAGTGAGCTGTGGGTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGAATGGATGAGGTGGTGATGTACTAAGTGAGCTGTGGGTTGTTT  842

seq1  TAGTTCTCCATCTTCTGTAGACCTGGGTAAGGTATCTGTTGACAAACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTCCATCTTCTGTAGACCTGGGTAAGGTATCTGTTGACAAACACT  892

seq1  ATAAGGCAATGAGGTGGGGGAGGAGCAGGTGCACACCTGTGAGCAGAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCAATGAGGTGGGGGAGGAGCAGGTGCACACCTGTGAGCAGAGGG  942

seq1  GACTCATAAATGATGCGGGAGTGATCATGAAATCTATGGAAAAACTCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATAAATGATGCGGGAGTGATCATGAAATCTATGGAAAAACTCTCT  992

seq1  AAGTTCCAAAAACCATCCTCGTCTCTCAAGGCTCCGGTCAAGCTAGGTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCAAAAACCATCCTCGTCTCTCAAGGCTCCGGTCAAGCTAGGTGC  1042

seq1  ACACTGAGAGGATCGATAGTTGTAGATGTGATGAACAAATTTGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGAGGATCGATAGTTGTAGATGTGATGAACAAATTTGAATTC  1090

seq1: chr18_69291390_69291732
seq2: B6Ng01-049B15.g_297_643 (reverse)

seq1  CTGTTTCAAGTGCAAAGATCTGGCAG-CCGAACCTCCAGTATGCTG-AAG  48
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  CTGTTTCAAGTGCAAAGATCTGGCAGCCCGAACCTCCAGTATGCTGAAAG  50

seq1  CTGGGAGTGTTCCTG-AAGTTCATAGCTG-AAGTAATGGCTTTCACCTGT  96
      ||||||||||||||| ||||| ||||||| ||||||||||| ||||||||
seq2  CTGGGAGTGTTCCTGAAAGTTAATAGCTGAAAGTAATGGCTATCACCTGT  100

seq1  AGGCTTCCAGCCACAACCAGCTCACAAAGAAAAGCGTGCAGAAGTGCCCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCAGCCACAACCAGCTCACAAAGAAAAGCGTGCAGAAGTGCCCA  150

seq1  ACGGGATGTAAGCAATCCCCCCCCCACCTTTAAAACGCAGGAGGGAACTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGATGTAAGCAATCCCCCCCCCACCTTTAAAACGCAGGAGGGAACTT  200

seq1  CTTGCCTGGCCACTGATGCTATCATTAATATTATTATTTTTAATGTGCCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGGCCACTGATGCTATCATTAATATTATTATTTTTAATGTGCCA  250

seq1  GATACTTTCATTGGCTTCTTGCTCTTAGCGCCTTTAAAGAGTACAACTCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTCATTGGCTTCTTGCTCTTAGCGCCTTTAAAGAGTACAACTCC  300

seq1  TTGAGTTTCTTCCTTTCTTTCTCTCTTTCTCCCTCTCTCTCTCTCTT  343
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTCTTCCTTTCTTTCTCTCTTTCTCCCTCTCTCTCTCTCTT  347