BAC Information

Click to search

BAC

Clone NameB6Ng01-049D21
Chromosome18 (Build37)4 (Build37)
Map Location 18,109,929 - 18,110,4396,606,689 - 6,607,180
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049D21.bB6Ng01-049D21.g
ACCDH873561DH873562
length508487
definitionDH873561|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D21, 5' end.DH873562|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,109,929 - 18,110,439)(6,606,689 - 6,607,180)
sequence
tctggtggaatttttagggtcacttatatatgctatcatatcatctgtaa
aaagtgatattttgacttcttcctttccaatttgtatccccttgatctcc
ttttgttgtcgaattgctctggctaggacttcaagtacaatgttgaatag
gtagggagagagtggacagccttgtctagtccctgattttagtgggattg
cttccagcttctcaccatttaagttgatgttggctactggattgctgtag
attgcttttatcatgtttaggtatgagccttgaattcctgatctttccaa
gacttttatcatgaatgggtgttggattttgtcaaatgctttttccgcat
ctaatgagatgatcatgtggtttttgtctttgagtttgtttatatagtgg
attacattgatggattttcgtatattaaaccatccctgcatctctggaat
gaaacctacttggttaggatggatgattgttttgatgtgttctgggattt
ggttagta
atgtgtgcctgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgaatgtaagcatgtctttatgtgtgagcatatgggggcatgcgt
gtgtgttaatatggaggccagaggacatcctcatttgtccttcctcgcac
tgtctactttgttttcttaaacaaatctttggctggcctaaaaccagcca
agcaaagtaggctgccaggctagctggccagtgagccccatcatcacggc
tggtattataatgggcatgccaccacacagagactattgtttgtcttatt
tttttacttgggttctagggatccaaaactcagagactcagagacttggc
tcacgagacaagtgctgcacggaccgtgctctccacccagcctgagagtg
gtcattcccatcacgtcctgctttcaggacatggttttcagcaaagcaaa
ataaaggagatttcaacactatctcccagactctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18109929_18110439
seq2: B6Ng01-049D21.b_47_557 (reverse)

seq1  TGCTAACCGAATCCAAGAACACATCAAAACAATCTTCCATCCTGACCAAG  50
      | |||||| ||||| ||||||||||||||||||| |||||||| ||||||
seq2  TACTAACCAAATCCCAGAACACATCAAAACAATCATCCATCCTAACCAAG  50

seq1  TAGGTTTCATCCCAGGGATGCAGGGATGGTTCAATATACAGAAATCCATC  100
      |||||||||| |||| ||||||||||||||| |||||||  |||||||||
seq2  TAGGTTTCATTCCAGAGATGCAGGGATGGTTTAATATACGAAAATCCATC  100

seq1  AATGTAATCCAGTATATAAACAAACTCAAAGACAAAAACCACATGATCAT  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATCCACTATATAAACAAACTCAAAGACAAAAACCACATGATCAT  150

seq1  CTCGTTAGATGCTGAGAAAGCATTTGACAAAATCCAACACCCATTCATGA  200
      ||| |||||||| || ||||||||||||||||||||||||||||||||||
seq2  CTCATTAGATGCGGAAAAAGCATTTGACAAAATCCAACACCCATTCATGA  200

seq1  TAAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATA  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAAAGTCTTGGAAAGATCAGGAATTCAAGGCTCATACCTAAACATGATA  250

seq1  AAAGCAATCTACAGCAAACCAGTAGCCAGCATCAAAGTAAATGGTGAGAA  300
      ||||||||||||||||| |||||||||| ||||||  |||||||||||||
seq2  AAAGCAATCTACAGCAATCCAGTAGCCAACATCAACTTAAATGGTGAGAA  300

seq1  GCTTGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTCT  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTCT  350

seq1  CTCCCTACCCATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTAGA  400
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  CTCCCTACCTATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTCGA  400

seq1  CAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGTCAAATT  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAAT  450

seq1  ATCACTTTTTGCAGATGATATGATAGTATATATACATGACCCTAAAAATT  500
      |||||||||| ||||||||||||||| |||||||  ||||||||||||||
seq2  ATCACTTTTTACAGATGATATGATAGCATATATAAGTGACCCTAAAAATT  500

seq1  CCACCAGAGAA  511
      |||||||||||
seq2  CCACCAGAGAA  511

seq1: chr4_6606689_6607180
seq2: B6Ng01-049D21.g_69_561 (reverse)

seq1  CAGAGAGTCAGGGAGTTAGTGTTGAAATCTCCTTTATTTTGCTTTGCTG-  49
      ||||||||| ||||| ||||||||||||||||||||||||||||||||| 
seq2  CAGAGAGTCTGGGAGATAGTGTTGAAATCTCCTTTATTTTGCTTTGCTGA  50

seq1  AAACCATGTCCTGAAAGCAGGACGTGTTGGGAATGACCACTCTCAGGCTG  99
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAACCATGTCCTGAAAGCAGGACGTGATGGGAATGACCACTCTCAGGCTG  100

seq1  GGTGGAGAGCACGGTCCGTGCAGCACTTGTCTCGTGAGCCAAGTCTCTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAGCACGGTCCGTGCAGCACTTGTCTCGTGAGCCAAGTCTCTGA  150

seq1  GTCTCTGAGTTTTGGATCCCTAGAACCCAAGTAAAAAAATAAGACAAACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAGTTTTGGATCCCTAGAACCCAAGTAAAAAAATAAGACAAACA  200

seq1  ATAGTCTCTGTGTGGTGGCATGCCCATTATAATACCAGCCGTGATGATGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCTGTGTGGTGGCATGCCCATTATAATACCAGCCGTGATGATGG  250

seq1  GGCTCACTGGCCAGCTAGCCTGGCAGCCTACTTTGCTTGGCTGGTTTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTGGCCAGCTAGCCTGGCAGCCTACTTTGCTTGGCTGGTTTTAG  300

seq1  GCCAGCCAAAGATTTGTTTAAGAAAACAAAGTAGACAGTGCGAGGAAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAAAGATTTGTTTAAGAAAACAAAGTAGACAGTGCGAGGAAGGA  350

seq1  CAAATGAGGATGTCCTCTGGCCTCCATATTAACACACACGCATGCCCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGGATGTCCTCTGGCCTCCATATTAACACACACGCATGCCCCCA  400

seq1  TATGCTCACACATAAAGACATGCTTACATTCACACACACACACACACACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCACACATAAAGACATGCTTACATTCACACACACACACACACACA  450

seq1  CACACACACACACACACACACACATTCAGGCACACATGAATTC  492
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACATTCAGGCACACATGAATTC  493