BAC Information

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BAC

Clone NameB6Ng01-049N15
Chromosome18 (Build37)
Map Location 88,625,816 - 88,626,772
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps18_1039.1, LOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049N15.bB6Ng01-049N15.g
ACCDH873989DH873990
length1,106940
definitionDH873989|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N15, 5' end.DH873990|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctagtcttctggctattattctctttccatcttccatattttct
aagattcagatgtaggggtttataataaatgtactaactggaaatggcta
cccattgccaattgttctctgcatttgtaccacttgtgaccttttgcaat
aacctcttataaaaaggagcttattttataatcgggtgagagccacactt
atctgaggatatagtattttctttggtattccaaacttttgggctattat
ccactcatcagtgagtacataccttgtgtgttcttttgtgactgaactac
ctcactagggttgatatgttcaagttccatctatttagctgggaatttta
taaagtcattgttttagtagctgagtactattccgttgtgtaaatgtacc
acattttctgtatctattcctctgctgaaggacatctgggttctttccag
cttctggctattataaataaggctgctatgaacatagtggagcatgtgtc
cttactacatggtggagcatcttctggatatattccaatttttatgtcca
attttttgaggaactgccagacaaatttccagagtggttgtaccagctta
caatccacagaccatatgaagctcaagaagaaggaagaccaaaatgtgga
tgcttcagtgcttcttagaaaggtgaaccaaatagtcactggaggaaata
tggagacaaagtgtggatcagagactgaaagaaggccatccagagactgc
cccacctggagatccatcccatatacagtcaccaaacccagttgctatgt
ggatgccagagtgttgctgacaggagtctgatatgatgtctcctgagagc
tctgccagagcctgacaacacgagcagatgctcgagcacatgactgagag
agtccctgatgagagtgagaagactgagagctaggattgagctcatgaga
gcagatgtcactagcgaccttgagctctaggactgaacacaagatacctt
gagccccatgcagcgcacttggcaagaatgctgttgaatcctgaggagct
gaactgagattcatgcctgtaggatgtcagctgaagtggcttcgggtaat
aggaaa
gaattcagatggacaaatgtatacagagcccacaggactataaataatat
gactaggagggcagaggaaataaacacacacacctctggagaaacacaaa
cagcaaccccaacacatctcaaatccaaagcacactataaatgttcaaaa
agcaatgatgctgaatcataaagactcaatttaatattttaacagtgaac
ttggatgcttagtgactctcactcatgacacgagacggaaaatggaaatt
gaggtttcgggcattaaaggacactaaaattaataattactatctactat
aatatctttcttaataatttgcatctaaacaagattggagaactcagttg
tggtgtcaggataaagtcgataagtttcacttaaaaaatataaaatatct
attaaaaaaactattgttggaaagtaggttagaggaagttgaagaaggga
accatggtctcaaattaagaatagaagattggctggtgctgtccacagct
gcttctgtgaggtgataaagatatgacatcataattgcctagatactact
aaaatatttacttagtttaaactattcttctgttaagagaaaggcaatac
aatcaagtcaatacagtaaaaacagtattacattttgtagtgaaatatga
aagatttgatgaaagttaagaaacagaaatttactaaacttaatggattg
caaagagatgataacaaaatagagaaatgaaacagcataaaggcacagaa
gttggaggtaaatctgctgaggttatcttaagtagtaaaatcctggaaga
catgtatcagatgaatgtgttgggtgtgagttctgggaaagacaagaaca
ggcaaggctttcatctttgtctctgatgcatgagtgtgattatcgcatga
gtactctgaaactatgaaatcactcaacatttgtacacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88625816_88626772
seq2: B6Ng01-049N15.g_68_1007 (reverse)

seq1  TCGTGTACAAATGTTGGAAGTGAATTTTCATAGTTTTCAGAGTAACTCAT  50
      ||||||||||||||||  |||||  |||||||| ||||||||| ||||||
seq2  TCGTGTACAAATGTTG--AGTGA--TTTCATAG-TTTCAGAGT-ACTCAT  44

seq1  GCGTATAATCACAACTCATGCATCAGAAGGACAAAAGATGGAAAGCCTTG  100
      ||| |||||||| ||||||||||||||  ||| |||||| ||||||||||
seq2  GCG-ATAATCAC-ACTCATGCATCAGA--GAC-AAAGAT-GAAAGCCTTG  88

seq1  CCCTGTTTCTTGTCTTTCCCAGAACTCACCACCCAACACCATTCATCTGA  150
       |||| |||||||||||||||||||||| ||||||||| |||||||||||
seq2  -CCTG-TTCTTGTCTTTCCCAGAACTCA-CACCCAACA-CATTCATCTGA  134

seq1  TAACATGTCTTCCAGGATTTTACTACTTAAGATAACCTCAGCAGATTTAC  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ACATGTCTTCCAGGATTTTACTACTTAAGATAACCTCAGCAGATTTAC  183

seq1  CTCCAACTTCTGTGCCTTTATGCTGTTTCATTTCTCTATTTTGTTATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTTCTGTGCCTTTATGCTGTTTCATTTCTCTATTTTGTTATCAT  233

seq1  CTCTTTGCAATCCATTAAGTTTAGTAAATTTCTGTTTCTTAACTTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCAATCCATTAAGTTTAGTAAATTTCTGTTTCTTAACTTTCATC  283

seq1  AAATCTTTCATATTTCACTACAAAATGTAATACTGTTTTTACTGTATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTCATATTTCACTACAAAATGTAATACTGTTTTTACTGTATTGA  333

seq1  CTTGATTGTATTGCCTTTCTCTTAACAGAAGAATAGTTTAAACTAAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGTATTGCCTTTCTCTTAACAGAAGAATAGTTTAAACTAAGTAA  383

seq1  ATATTTTAGTAGTATCTAGGCAATTATGATGTCATATCTTTATCACCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGTAGTATCTAGGCAATTATGATGTCATATCTTTATCACCTCA  433

seq1  CAGAAGCAGCTGTGGACAGCACCAGCCAATCTTCTATTCTTAATTTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAGCTGTGGACAGCACCAGCCAATCTTCTATTCTTAATTTGAGA  483

seq1  CCATGGTTCCCTTCTTCAACTTCCTCTAACCTACTTTCCAACAATAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTCCCTTCTTCAACTTCCTCTAACCTACTTTCCAACAATAGTTT  533

seq1  TTTTAATAGATATTTTATATTTTTTAAGTGAAACTTATCGACTTTATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAGATATTTTATATTTTTTAAGTGAAACTTATCGACTTTATCCT  583

seq1  GACACCACAACTGAGTTCTCCAATCTTGTTTAGATGCAAATTATTAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACAACTGAGTTCTCCAATCTTGTTTAGATGCAAATTATTAAGAA  633

seq1  AGATATTATAGTAGATAGTAATTATTAATTTTAGTGTCCTTTAATGCCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTATAGTAGATAGTAATTATTAATTTTAGTGTCCTTTAATGCCCG  683

seq1  AAACCTCAATTTCCATTTTCCGTCTCGTGTCATGAGTGAGAGTCACTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCAATTTCCATTTTCCGTCTCGTGTCATGAGTGAGAGTCACTAAG  733

seq1  CATCCAAGTTCACTGTTAAAATATTAAATTGAGTCTTTATGATTCAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGTTCACTGTTAAAATATTAAATTGAGTCTTTATGATTCAGCAT  783

seq1  CATTGCTTTTTGAACATTTATAGTGTGCTTTGGATTTGAGATGTGTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTTTTGAACATTTATAGTGTGCTTTGGATTTGAGATGTGTTGGG  833

seq1  GTTGCTGTTTGTGTTTCTCCAGAGGTGTGTGTGTTTATTTCCTCTGCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTTGTGTTTCTCCAGAGGTGTGTGTGTTTATTTCCTCTGCCCT  883

seq1  CCTAGTCATATTATTTATAGTCCTGTGGGCTCTGTATACATTTGTCCATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCATATTATTTATAGTCCTGTGGGCTCTGTATACATTTGTCCATC  933

seq1  TGAATTC  957
      |||||||
seq2  TGAATTC  940