BAC Information

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BAC

Clone NameB6Ng01-050C04
Chromosome18 (Build37)
Map Location 76,774,994 - 76,908,567
singlet/doubletdoublet
Overlap geneEG639576
Upstream geneGm672, Zbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188
Downstream geneEG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050C04.bB6Ng01-050C04.g
ACCDH874178DH874179
length1,012731
definitionDH874178|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C04, 5' end.DH874179|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,774,994 - 76,776,031)(76,907,842 - 76,908,567)
sequence
gaattcttcatagtgtcattgtgatagaaggaaatgtcttcctgaatagc
cctcagcccgagatggagctttgcctacaacccttcactatgtatagcaa
ggagtacctggtgctgtctgtctgtgtgccccctctggacattggtgtcg
gagggcaggacttctaatttgcccatccctggtcttctacacttaaggga
ctaccatatgctgacccttgatacacaccagcaggaagaaaagccatgtg
gttgaggtcctgctgtgtagtctaggctagctcaaaatgaacggtaccct
tggctttgcctctcatgtggtgggtttacaggcctgggctcccaataccc
actctgcctgggtttctacaagaagcacagcggtctcctttctgccaaca
caagtgcaaaaccacaaagcagaagccatattcagagagcccaagctggt
cagggacatcaagctcttcataactcttcagagcaccacacctaatgctc
tagccgctcagatctgggaagccatagtgaagaagttgtcattcactgac
aaacccgctcaagacagcaattttctgggacacatcccatgtggccactg
gtccctagacacctgccccctagcttcttctcaaggcctctgctcccgag
gcctggccatctacgtaggacatctggtgctgagtgaggtcggtgcaaac
tttacagggactttatggctccatcaagagctgctgaagctcttggagtg
gacctactcttctggacagtgcttctggagcagtctagagcttccatgcc
ttgggattttacgagctcctaagatcacctgggtgttgtgcctcgctaat
tctaacctgattctgggggtccagcatgatcctttacccattgaggtatc
tgatgccaggaagctagtaactttgagaggccgagggctcctatgcctga
tcgaaaaactaaaccggctggaggtttgtcctatggcttggtgacagaga
caattggagaac
gaattccagattccaggccctttttgagccctctgagtttctggccatct
ttggtcagatccagacttccggcagattcccttccttcctctctctccct
ccatctcaaagtaggaaggtggcacactttgtctgtagttacactccatt
gcagatctggaacccacttaacgctgccccacccctgccctcacccaggc
tcagagccttgagttatctccttggggactttagtgcctcttcccaggat
gactggtgtgtgtgcatgtatgtgtttgcgtgtgtgtatgcaggtgtgtg
tgaatgtgtgtgtgtgtgaatgtgactcactccaaggaaagtgaaatacc
atgcaaaggtgctttctggggggcggggggcagtattagcttttcaacag
aaactgattgcatacagccttgggctttacttctctggcctagaacaggg
atggagggggaagtaaaacatgggaaggttattttaaaactaatttagat
tatgacatatcttttctgaaagtccatgaatcgacctttaaatttttcat
ttatttgggtggataatatgtgtatgtgagcatgtatgccacctcatacc
ttgcagaggaccgaggacaactcacgggagtcagttcatccctttccatc
gtgtgggtcctggagagagatcttgatttgtatggttgggtattggtaaa
taccttttattctctgatccatcttgctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_76774994_76776031
seq2: B6Ng01-050C04.b_44_1055

seq1  GAATTCTTCATAGTGTCATTGTGATAGAAGGAAATGTCTTCCTGAATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATAGTGTCATTGTGATAGAAGGAAATGTCTTCCTGAATAGC  50

seq1  CCTCAGCCCGAGATGGAGCTTTGCCTACAACCCTTCACTATGTATAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCCGAGATGGAGCTTTGCCTACAACCCTTCACTATGTATAGCAA  100

seq1  GGAGTACCTGGTGCTGTCTGTCTGTGTGCCCCCTCTGGACATTGGTGTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACCTGGTGCTGTCTGTCTGTGTGCCCCCTCTGGACATTGGTGTCG  150

seq1  GAGGGCAGGACTTCTAATTTGCCCATCCCTGGTCTTCTACACTTAAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGGACTTCTAATTTGCCCATCCCTGGTCTTCTACACTTAAGGGA  200

seq1  CTACCATATGCTGACCCTTGATACACACCAGCAGGAAGAAAAGCCATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATATGCTGACCCTTGATACACACCAGCAGGAAGAAAAGCCATGTG  250

seq1  GTTGAGGTCCTGCTGTGTAGTCTAGGCTAGCTCAAAATGAACGGTACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGTCCTGCTGTGTAGTCTAGGCTAGCTCAAAATGAACGGTACCCT  300

seq1  TGGCTTTGCCTCTCATGTGGTGGGTTTACAGGCCTGGGCTCCCAATACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGCCTCTCATGTGGTGGGTTTACAGGCCTGGGCTCCCAATACCC  350

seq1  ACTCTGCCTGGGTTTCTACAAGAAGCACAGCGGTCTCCTTTCTGCCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCTGGGTTTCTACAAGAAGCACAGCGGTCTCCTTTCTGCCAACA  400

seq1  CAAGTGCAAAACCACAAAGCAGAAGCCATATTCAGAGAGCCCAAGCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAAAACCACAAAGCAGAAGCCATATTCAGAGAGCCCAAGCTGGT  450

seq1  CAGGGACATCAAGCTCTTCATAACTCTTCAGAGCACCACACCTAATGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACATCAAGCTCTTCATAACTCTTCAGAGCACCACACCTAATGCTC  500

seq1  TAGCCGCTCAGATCTGGGAAGCCATAGTGAAGAAGTTGTCATTCACTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGCTCAGATCTGGGAAGCCATAGTGAAGAAGTTGTCATTCACTGAC  550

seq1  AAACCCGCTCAGGACAGCAATTTTCTGGGACACATCCCATGTGGCCACTG  600
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAACCCGCTCAAGACAGCAATTTTCTGGGACACATCCCATGTGGCCACTG  600

seq1  GTCCCTAGACACCTGCCCCCTAGCTTCTTCTCAATGCCTCTGCTCCCGAG  650
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTCCCTAGACACCTGCCCCCTAGCTTCTTCTCAAGGCCTCTGCTCCCGAG  650

seq1  GCCTGGCCATCTACGTAGGACATCTGGTGCTGAGTGA-GTCGGTGCAGAC  699
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  GCCTGGCCATCTACGTAGGACATCTGGTGCTGAGTGAGGTCGGTGCAAAC  700

seq1  -TTACAGGGACTTTATGGCTCCATCAAGAGCTGCTG-AGCTCTTGGAGT-  746
       ||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TTTACAGGGACTTTATGGCTCCATCAAGAGCTGCTGAAGCTCTTGGAGTG  750

seq1  GACCTAACTC-TCTGGACAGTGCTTCT-GAGCAAGTCCAGAGCCTCCATG  794
      ||||| |||| |||||||||||||||| |||| |||| ||||| ||||||
seq2  GACCT-ACTCTTCTGGACAGTGCTTCTGGAGC-AGTCTAGAGCTTCCATG  798

seq1  CC-TGGGATATTTACGAAGCATCTAGAATCAGCTGGTTGTTG-GCCTCGC  842
      || |||||| |||||| |||  |||  |||| |||| ||||| |||||||
seq2  CCTTGGGAT-TTTACG-AGCTCCTAAGATCACCTGGGTGTTGTGCCTCGC  846

seq1  TAATTCTTACCTGATACTGTGGGGTTCAGCAGTGATCCTTATACCCCAAT  892
      ||||||| ||||||| ||| ||||| ||||| |||||||| |||||  ||
seq2  TAATTCTAACCTGATTCTG-GGGGTCCAGCA-TGATCCTT-TACCC--AT  891

seq1  TGAGGTATCTGATGCTCAGGAAGGCTAAGTAACTTTGATGAGGTCAGAGG  942
      ||||||||||||||| |||||| ||| ||||||||||| |||| |   ||
seq2  TGAGGTATCTGATGC-CAGGAA-GCT-AGTAACTTTGA-GAGGCCGAGGG  937

seq1  CTCCTATGCCACTGAACTCAGAAAAAGACTAAACCTGCCTGTGAGTGTTC  992
      |||||||||  |||| |   |||||  |||||||| | ||| ||| ||| 
seq2  CTCCTATGC--CTGATC---GAAAA--ACTAAACC-GGCTG-GAG-GTT-  976

seq1  TGTCCTCTGTGTGCTTTGTTTGACAATGTAAGCACAATTGGAGAAC  1038
      |||||| ||   |||| |  |||||  |     |||||||||||||
seq2  TGTCCTATG---GCTTGG--TGACAGAG-----ACAATTGGAGAAC  1012

seq1: chr18_76907842_76908567
seq2: B6Ng01-050C04.g_68_798 (reverse)

seq1  GACAGCAAGATGGCTCAGAGAAT-AAAGGTATTTAACCAATACCAAGCCT  49
      ||||||||||||| ||||||||| |||||||||| ||||||||| | || 
seq2  GACAGCAAGATGGATCAGAGAATAAAAGGTATTT-ACCAATACCCAACCA  49

seq1  GAC-AATC-AGTTCTCTCTCCAGGACCCACACGATGG-AAGGGATGAACT  96
       || |||| || ||||||||||||||||||||||||| ||||||||||||
seq2  TACAAATCAAGATCTCTCTCCAGGACCCACACGATGGAAAGGGATGAACT  99

seq1  GACTCCCGTGAGTTGTCCTCGGTCCTCTGC-AGGTATGAGGTGGCATACA  145
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACTCCCGTGAGTTGTCCTCGGTCCTCTGCAAGGTATGAGGTGGCATACA  149

seq1  TGCTCACATACACATATTATCCACCCAAATAAATG-AAAATTTAAAGGTC  194
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCTCACATACACATATTATCCACCCAAATAAATGAAAAATTTAAAGGTC  199

seq1  GATTCATGGACTTTCAGAAAAGATATGTCATAATCTAAATTAGTTTTAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATGGACTTTCAGAAAAGATATGTCATAATCTAAATTAGTTTTAAA  249

seq1  ATAACCTTCCCATGTTTTACTTCCCCCTCCATCCCTGTTCTAGGCCAGAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTCCCATGTTTTACTTCCCCCTCCATCCCTGTTCTAGGCCAGAG  299

seq1  AAGTAAAGCCCAAGGCTGTATGCAATCAGTTTCTGTTGAAAAGCTAATAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGCCCAAGGCTGTATGCAATCAGTTTCTGTTGAAAAGCTAATAC  349

seq1  TGCCCCCCGCCCCCCAGAAAGCACCTTTGCATGGTATTTCACTTTCCTTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCCGCCCCCCAGAAAGCACCTTTGCATGGTATTTCACTTTCCTTG  399

seq1  GAGTGAGTCACATTCACACACACACACATTCACACACACCTGCATACACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTCACATTCACACACACACACATTCACACACACCTGCATACACA  449

seq1  CACGCAAACACATACATGCACACACACCAGTCATCCTGGGAAGAGGCACT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAAACACATACATGCACACACACCAGTCATCCTGGGAAGAGGCACT  499

seq1  AAAGTCCCCAAGGAGATAACTCAAGGCTCTGAGCCTGGGTGAGGGCAGGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCCAAGGAGATAACTCAAGGCTCTGAGCCTGGGTGAGGGCAGGG  549

seq1  GTGGGGCAGCGTTAAGTGGGTTCCAGATCTGCAATGGAGTGTAACTACAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCAGCGTTAAGTGGGTTCCAGATCTGCAATGGAGTGTAACTACAG  599

seq1  ACAAAGTGTGCCACCTTCCTACTTTGAGATGGAGGGAGAGAGAGGAAGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGTGCCACCTTCCTACTTTGAGATGGAGGGAGAGAGAGGAAGGA  649

seq1  AGGGAATCTGCCGGAAGTCTGGATCTGACCAAAGATGGCCAGAAACTCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCTGCCGGAAGTCTGGATCTGACCAAAGATGGCCAGAAACTCAG  699

seq1  AGGGCTCAAAAAGGGCCTGGAATCTGGAATTC  726
      ||||||||||||||||||||||||||||||||
seq2  AGGGCTCAAAAAGGGCCTGGAATCTGGAATTC  731