BAC Information

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BAC

Clone NameB6Ng01-050D07
Chromosome18 (Build37)
Map Location 20,533,862 - 20,651,921
singlet/doubletdoublet
Overlap geneDsg1b, Dsg4
Upstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1, Dsg1c, Dsg1a
Downstream geneLOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050D07.bB6Ng01-050D07.g
ACCDH874224DH874225
length1,189895
definitionDH874224|Mus musculus domesticus DNA, BAC clone: B6Ng01-050D07, 5' end.DH874225|Mus musculus domesticus DNA, BAC clone: B6Ng01-050D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,533,862 - 20,535,071)(20,651,396 - 20,651,921)
sequence
gaattcaagatggatagagtattcccttgtcatgccagcctacaagagtt
ggtcctcctgactttggtgtctagtgagtcattcctggccacatgatcta
tttactaatacattgttcaaactgagacataggtggaccttcacgttctc
atttcctaacgaggaattcagcctgctcctctcgttattttgtttagtca
tggcatccaattcctatcaaccaattttactcactgcaagcacaggacgc
ccttttccacccaatgagttcgccaatgagtcatgtgacatttcaaacct
ctgtcaagtgttgccacacatgaatagcaaaatgacaacaccgtagagac
tggtccccagagatatcttccttttctgggacaagctgagcattctctga
caataatctacatgttatcacactggccttatttcagagtgccataacaa
accctgaggatgtccagttccagtcgggattctgagcaggtatataaggg
aagatattccaacagagtctttgactgttgctgtgtatggctcaacattc
ttgctcaccacaaggtcttccagtgctgcatgtgtgggcagcctttctct
gtcctaattggctccttgtgaagtcttggccctgtgctcaggaatcaaca
ctaatgtttaaccacctcacctgaagtgagtcttctgaattctcattagt
atttcaacactgggcttcaacgggagtttactagaggctgtggctgttcc
ctccgaatctgccttggtaaaattttcaagtctgttttaatgcattttaa
aggacaggcccttaaagaggagaaaattagagagggagaagaaaataccc
atagagagaaaatggggaacttcctggacttacacaggtgagtgaaagaa
acaggaattacacaagaaacaaatgatcataaagtatgtctgtttgttca
aatgcttttaaactctctcatcatagtaatttttttgtcttattaaatta
gaactagcagtaatcttttctaacatctactaaaatgaaagcttataaat
tctactggacctgaagggttggccttgacaaaagaaatatcgattgaaca
caagcttcaaatatacttctcttataatctgagtaggagctgagaactct
ggacagcctgaagccttcatcaaacaggagtgctatgct
gaattctctatgttctggaaacatgtgatgactgggtattttcattgccc
taaaatgcctgccctcgacagttcatccttttctcctcttggtctttaat
gtgatctttattagttccgtagttttacctcttccatagtgtcagagagt
tggactcatacattataaagctctgtgcaggtatctgcagaggccaagag
aatgtgtaaggttctctggaattggagttacaggcagttttgagccacta
tgtgggtactgggaacatagcctgcatcttttgcaagaacagccaatgat
cttaaccaaagagccttgctgcagctcctccttatgtttttggtaacttg
tgtcatccctccatttttcctgtcctagctagaggctcatcaattttatt
aatacttgtaaatagcccttgtggtttgattggttgtctttattgctttc
ttgttttctattttattgatttctgctctagtttttgttatttctttttc
tttggattctacttgtatttcctccggcatgtaccttttctctgctcttg
ttttcttcctttttcctttctctcactcttttctccctccttctctttct
ttctttctttttattatagacaacaaaataaattgcgtttattgtcttaa
ttaatcttcaaaacttattaagaccaagaaatttgtcagtgtcataagag
gcaagctcaacacataaaggtcaattgcatttctacattctttctataac
ctccttctctttcttcttcttttctttcttgtgttattggccttgctttt
tagctcaaattaaccttgaaataacaatcctcctgcctccaccttagtgt
gctaggattatatgtgtatgtcaccataccagttaaatttaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_20533862_20535071
seq2: B6Ng01-050D07.b_44_1232

seq1  GAATTCAAGATGGATAGAGTATTCCCTTGTCATGCCAGCCTACAAGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATGGATAGAGTATTCCCTTGTCATGCCAGCCTACAAGAGTT  50

seq1  GGTCCTCCTGACTTTGGTGTCTAGTGAGTCATTCCTGGCCACATGATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCCTGACTTTGGTGTCTAGTGAGTCATTCCTGGCCACATGATCTA  100

seq1  TTTACTAATACATTGTTCAAACTGAGACATAGGTGGACCTTCACGTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAATACATTGTTCAAACTGAGACATAGGTGGACCTTCACGTTCTC  150

seq1  ATTTCCTAACGAGGAATTCAGCCTGCTCCTCTCGTTATTTTGTTTAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAACGAGGAATTCAGCCTGCTCCTCTCGTTATTTTGTTTAGTCA  200

seq1  TGGCATCCAATTCCTATCAACCAATTTTACTCACTGCAAGCACAGGACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCCAATTCCTATCAACCAATTTTACTCACTGCAAGCACAGGACGC  250

seq1  CCTTTTCCACCCAATGAGTTCGCCAATGAGTCATGTGACATTTCAAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCACCCAATGAGTTCGCCAATGAGTCATGTGACATTTCAAACCT  300

seq1  CTGTCAAGTGTTGCCACACATGAATAGCAAAATGACAACACCGTAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGTGTTGCCACACATGAATAGCAAAATGACAACACCGTAGAGAC  350

seq1  TGGTCCCCAGAGATATCTTCCTTTTCTGGGACAAGCTGAGCATTCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCAGAGATATCTTCCTTTTCTGGGACAAGCTGAGCATTCTCTGA  400

seq1  CAATAATCTACATGTTATCACACTGGCCTTATTTCAGAGTGCCATAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATCTACATGTTATCACACTGGCCTTATTTCAGAGTGCCATAACAA  450

seq1  ACCCTGAGGATGTCCAGTTCCAGTCGGGATTCTGAGCAGGTATATAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGGATGTCCAGTTCCAGTCGGGATTCTGAGCAGGTATATAAGGG  500

seq1  AAGATATTCCAACAGAGTCTTTGACTGTTGCTGTGTATGGCTCAACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTCCAACAGAGTCTTTGACTGTTGCTGTGTATGGCTCAACATTC  550

seq1  TTGCTCACCACAAGGTCTTCCAGTGCTGCATGTGTGGGCAGCCTTTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCACCACAAGGTCTTCCAGTGCTGCATGTGTGGGCAGCCTTTCTCT  600

seq1  GTCCTAATTGGCTCCTTGTGAAGTCTTGGCCCTGTGCTCAGGAATCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAATTGGCTCCTTGTGAAGTCTTGGCCCTGTGCTCAGGAATCAACA  650

seq1  CTAATGTTTAACCACCTCACCTGAAGTGAGTCTTCTGAATTCTCATTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTTAACCACCTCACCTGAAGTGAGTCTTCTGAATTCTCATTAGT  700

seq1  ATTTCAACACTGGGCTTCAACGGGAGTTTACTAGAGGCTGTGGCTGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACACTGGGCTTCAACGGGAGTTTACTAGAGGCTGTGGCTGTTCC  750

seq1  CTCCGAATCTGCCTTGGTAAAATTTTCAAGTCTGTTTTAATGCATTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAATCTGCCTTGGTAAAATTTTCAAGTCTGTTTTAATGCATTTTAA  800

seq1  AGGACAGGCCCTTAAAGAGGAGAAAATTAGAGAGGGAGAAGAAAATACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGCCCTTAAAGAGGAGAAAATTAGAGAGGGAGAAGAAAATACCC  850

seq1  ATAGAGAGAAAATGGGGAACTTCCTGGACTTACACAGGTGAGGTGAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  ATAGAGAGAAAATGGGGAACTTCCTGGACTTACACAGGTGA-GTGAAAG-  898

seq1  AAACAGGAATTACACAAAGAAACAAATGATCATAAAGGTTATGTCTTGTT  950
      ||||||||||||||| |||||||||||||||||||||  |||||| ||||
seq2  AAACAGGAATTACAC-AAGAAACAAATGATCATAAAG--TATGTC-TGTT  944

seq1  TGTTCAAAATGCTTTTTAAAACTCCTCTCATCATTAGTAATTTTTTTGTC  1000
      ||||| ||||||||||  ||||| ||||||||| ||||||||||||||||
seq2  TGTTC-AAATGCTTTT--AAACT-CTCTCATCA-TAGTAATTTTTTTGTC  989

seq1  TTATTAAATTTAGAACTAGCAG-CATCTTTCCTAACATCTACTAAAATGA  1049
      |||||||| |||||||||||||  |||||| |||||||||||||||||| 
seq2  TTATTAAA-TTAGAACTAGCAGTAATCTTTTCTAACATCTACTAAAATG-  1037

seq1  AAAGCTTATAATTTCCTACTGGGACCTGAGGGTTTGGCTCTGAACAAAAG  1099
      ||||||||||| || ||||| |||||||| || ||||| ||  |||||||
seq2  AAAGCTTATAAATT-CTACT-GGACCTGAAGGGTTGGC-CTTGACAAAAG  1084

seq1  ATATA-CGAATG-ACACAGAGCTCCAAATATACTTCTCTTATTAATCTGA  1147
      | ||| ||| || ||||| |||| ||||||||||||||||| ||||||||
seq2  AAATATCGATTGAACACA-AGCTTCAAATATACTTCTCTTA-TAATCTGA  1132

seq1  TGAGGAGCTGAGAACTTCTGAACAGCTGAGAAGCCTTTCAGCACAAGCAG  1197
        ||||||||||||| |||| |||||   |||||| ||||   ||| |||
seq2  GTAGGAGCTGAGAAC-TCTGGACAGC-CTGAAGCC-TTCA--TCAAACAG  1177

seq1  GAGTGGCTATGCT  1210
      |||| ||||||||
seq2  GAGT-GCTATGCT  1189

seq1: chr18_20651396_20651921
seq2: B6Ng01-050D07.g_68_593 (reverse)

seq1  CGGAGGAAATACAAGTAGAATCCAAAGAAAAAGAAATAACAAAAACTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGAAATACAAGTAGAATCCAAAGAAAAAGAAATAACAAAAACTAGA  50

seq1  GCAGAAATCAATAAAATAGAAAACAAGAAAGCAATAAAGACAACCAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATCAATAAAATAGAAAACAAGAAAGCAATAAAGACAACCAATCA  100

seq1  AACCACAAGGGCTATTTACAAGTATTAATAAAATTGATGAGCCTCTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAGGGCTATTTACAAGTATTAATAAAATTGATGAGCCTCTAGCT  150

seq1  AGGACAGGAAAAATGGAGGGATGACACAAGTTACCAAAAACATAAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGAAAAATGGAGGGATGACACAAGTTACCAAAAACATAAGGAGG  200

seq1  AGCTGCAGCAAGGCTCTTTGGTTAAGATCATTGGCTGTTCTTGCAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGCAAGGCTCTTTGGTTAAGATCATTGGCTGTTCTTGCAAAAGA  250

seq1  TGCAGGCTATGTTCCCAGTACCCACATAGTGGCTCAAAACTGCCTGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTATGTTCCCAGTACCCACATAGTGGCTCAAAACTGCCTGTAAC  300

seq1  TCCAATTCCAGAGAACCTTACACATTCTCTTGGCCTCTGCAGATACCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCCAGAGAACCTTACACATTCTCTTGGCCTCTGCAGATACCTGC  350

seq1  ACAGAGCTTTATAATGTATGAGTCCAACTCTCTGACACTATGGAAGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTTTATAATGTATGAGTCCAACTCTCTGACACTATGGAAGAGGT  400

seq1  AAAACTACGGAACTAATAAAGATCACATTAAAGACCAAGAGGAGAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACGGAACTAATAAAGATCACATTAAAGACCAAGAGGAGAAAAGG  450

seq1  ATGAACTGTCGAGGGCAGGCATTTTAGGGCAATGAAAATACCCAGTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGTCGAGGGCAGGCATTTTAGGGCAATGAAAATACCCAGTCATC  500

seq1  ACATGTTTCCAGAACATAGAGAATTC  526
      ||||||||||||||||||||||||||
seq2  ACATGTTTCCAGAACATAGAGAATTC  526