BAC Information

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BAC

Clone NameB6Ng01-050M23
Chromosome3 (Build37)18 (Build37)
Map Location 41,059,193 - 41,059,7375,390,667 - 5,391,853
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050M23.bB6Ng01-050M23.g
ACCDH874643DH874644
length9241,160
definitionDH874643|Mus musculus domesticus DNA, BAC clone: B6Ng01-050M23, 5' end.DH874644|Mus musculus domesticus DNA, BAC clone: B6Ng01-050M23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,193 - 41,059,737)(5,390,667 - 5,391,853)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtgacct
ttttgtcttattgatggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcaggatttttttcccctgtacccatatcttcacggcttttcccta
ctttctcctctataagtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacaaggagatagaaatggatcaattcc
cattcttctacatgataaccaccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttccactgtatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtggattcatctctgggtcttcaattctgttccattg
gtctacttgtctgtcactataccagtaccatgcagttttgatcacaattg
ctctgtagtacagttttaggtccggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctcggttttttgttattccagat
gaatctgccgattgccctttctaattcgtggaagaattgagttggaattt
tgatggggattgcagtgaatctgtagattgcttttgggaagatggccatt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttctttagagacttgaagttcttatcat
acagatctttcacttccttagttt
gaattcctttgatggcatttaaaaaaataatttagtgtgtgtgagagaga
ctgtgtgcacagacatgcctgtttacgcatgtaccatggtatgtgggcag
aggccacaggacaaattactggagttaactttcccctctccaccacgtgc
attccagggaccaaaccctttccctactgggccatcttgctggccctgat
accataagcttttaccaaaacaatgacttacttagttgatcatttcagaa
gtcataggattcaaaatgttggttgtgtagtggtgattctaaaaaaggaa
aagttgagtcatgtactgttatttgaaattctagacttgagtctgtcatt
gttattgtggtccacatcagtcaggaacattagattacctaagctcttct
ggaaggtgttttctctgaatcccatcagcactccccacaggccagtcagc
ccttctcacaaggcagcgttcatggtgcttgaaaccaatggcatcactca
caccacatgagtgtggtgcctgtcactcctctaagatacacctgggagaa
gaaggtgtgtctccaaccccgcatgatgtctccagctcaagatgagttca
ttgcttctggttaaaaccagagaatgaaaaggcacactagggcaggcacc
cttttggagaagagtgagccagatgatgggtgtaatggaaccatggagct
gctgggtcatagaggcagttctcggagacggcaaggtgtgacctcaggta
gacaaaaccactcctcaattgtggtacactgtaaaataaggacatttact
cacaccgcttttgcatggtgctatggggcagtttctctgggggtagctct
ccttgtgtttcttagccaactgtttgttccttttgttttaaacagatgga
catctttcattgtctggtgattgactccgaagactcaagttaaacaggaa
gactcagctctggttgtgtgtgtctgtttacagtgaagcacatgacacca
tgaatgaattcctttaagaattgctaccttctgttctcctctgaagctca
caaactgctctttgggcttgcaggacattccaggaccaaattcagcctga
caaggttttcctgctcctcgaccagtgaaccacctgcatctctttaattc
atttttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059193_41059737
seq2: B6Ng01-050M23.b_47_593 (reverse)

seq1  ATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACT  50
      |||||| |||||||||||| |||| | |||||||||||||||||||||||
seq2  ATGGAACAGAATTGAAGACCCAGAGATGAATCCACACACCTATGGTCACT  50

seq1  TGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATT  100
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  TGATCTTTGACAAGGGAGCTAAAACCATACAGTGGAAAAAAGACAGCATT  100

seq1  TTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCG  150
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  TTCAACAAATGGTGCTGGCACAACTGGTGGTTATCATGTAGAAGAATGGG  150

seq1  AATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCA  200
      |||||||||| | ||||||||||||||||||||||||||||||||||| |
seq2  AATTGATCCATTTCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATTA  200

seq1  AGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTG  250
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTA  250

seq1  GGGAAAAGCCTTGAAGATATGGTCACAGGGG-AAAAATTCCTGCATAGAA  299
      |||||||||| |||||||||||  ||||||| ||||| ||||| ||||||
seq2  GGGAAAAGCCGTGAAGATATGGGTACAGGGGAAAAAAATCCTGAATAGAA  300

seq1  CAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATG  349
      ||||||||||||||||||||||||  ||||| || |||||||||||||| 
seq2  CAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAATGGGACCTCATA  350

seq1  AAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  399
      ||| |||||||||||||||| |||||||||||| ||||||||||||||||
seq2  AAATTGCAAAGCTTCTGCAAAGCAAAAGACACCATCAATAAGACAAAAAG  400

seq1  G-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  448
      | |||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  GTCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCGGATAGGG  450

seq1  GACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAA  498
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAA  500

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  545
      ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATT  547

seq1: chr18_5390667_5391853
seq2: B6Ng01-050M23.g_68_1227 (reverse)

seq1  TTTTAAAAAATGTAAAATTAAAAAGAGATGCAGGCTGAGTTCACTTGGGT  50
       ||| |||||||   ||||  ||||||||||||| || ||||||| |   
seq2  -TTTTAAAAATG---AATT--AAAGAGATGCAGG-TG-GTTCACTGG---  39

seq1  TTTGAAGGAGACAGGAAAACATAGTCAGCGGCTGGAAATTTGGTGCCGTG  100
        |  ||||| ||||||||| | ||||  |||||  |||||||| ||  |
seq2  --TCGAGGAG-CAGGAAAACCTTGTCA--GGCTG--AATTTGGT-CCTGG  81

seq1  AATGTCCTGCAAGGCCCCAAAGAGCAGGTTTGTGAGC-TCAGAGGAG-AC  148
      |||||||||||||  ||||||||||| |||||||||| ||||||||| ||
seq2  AATGTCCTGCAAG--CCCAAAGAGCA-GTTTGTGAGCTTCAGAGGAGAAC  128

seq1  AGAA-GTAGCAAATTCTTAGAGGATTTCATTCATGGTTGTTCATGTGCTT  197
      |||| ||||| |||||||| |||| ||||||||||||   ||||||||||
seq2  AGAAGGTAGC-AATTCTTAAAGGAATTCATTCATGGT--GTCATGTGCTT  175

seq1  CACTGTAAACAGACACACACAACCAGAGCTGGAGTCCTTCCTGTTTAACT  247
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  CACTGTAAACAGACACACACAACCAGAGCT-GAGT-CTTCCTGTTTAACT  223

seq1  TGAGTCTTCGGGAGTCAATCACCAGACAATGAAAGATGTCCATCTGTTTA  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGTCTTC-GGAGTCAATCACCAGACAATGAAAGATGTCCATCTGTTT-  271

seq1  AAAACAAAAGGAACAAACAGTTTGGCTAAGAAACACAAGGAGAGCTACCC  347
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAACAAAAGGAACAAACAG-TTGGCTAAGAAACACAAGGAGAGCTACCC  320

seq1  CCAGAGAAACTGCCCCATAGCACCATGCAAAAGCGGTGTGAGTAAATGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAACTGCCCCATAGCACCATGCAAAAGCGGTGTGAGTAAATGTC  370

seq1  CTTATTTTACAGTGTACCACAATTGAGGAGTGGTTTTGTCTACCTGAGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTACAGTGTACCACAATTGAGGAGTGGTTTTGTCTACCTGAGGT  420

seq1  CACACCTTGCCGTCTCCGAGAACTGCCTCTATGACCCAGCAGCTCCATGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTGCCGTCTCCGAGAACTGCCTCTATGACCCAGCAGCTCCATGG  470

seq1  TTCCATTACACCCATCATCTGGCTCACTCTTCTCCAAAAGGGTGCCTGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTACACCCATCATCTGGCTCACTCTTCTCCAAAAGGGTGCCTGCC  520

seq1  CTAGTGTGCCTTTTCATTCTCTGGTTTTAACCAGAAGCAATGAACTCATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGCCTTTTCATTCTCTGGTTTTAACCAGAAGCAATGAACTCATC  570

seq1  TTGAGCTGGAGACATCATGCGGGGTTGGAGACACACCTTCTTCTCCCAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGGAGACATCATGCGGGGTTGGAGACACACCTTCTTCTCCCAGG  620

seq1  TGTATCTTAGAGGAGTGACAGGCACCACACTCATGTGGTGTGAGTGATGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTAGAGGAGTGACAGGCACCACACTCATGTGGTGTGAGTGATGC  670

seq1  CATTGGTTTCAAGCACCATGAACGCTGCCTTGTGAGAAGGGCTGACTGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTTCAAGCACCATGAACGCTGCCTTGTGAGAAGGGCTGACTGGC  720

seq1  CTGTGGGGAGTGCTGATGGGATTCAGAGAAAACACCTTCCAGAAGAGCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGAGTGCTGATGGGATTCAGAGAAAACACCTTCCAGAAGAGCTT  770

seq1  AGGTAATCTAATGTTCCTGACTGATGTGGACCACAATAACAATGACAGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATCTAATGTTCCTGACTGATGTGGACCACAATAACAATGACAGAC  820

seq1  TCAAGTCTAGAATTTCAAATAACAGTACATGACTCAACTTTTCCTTTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTAGAATTTCAAATAACAGTACATGACTCAACTTTTCCTTTTTT  870

seq1  AGAATCACCACTACACAACCAACATTTTGAATCCTATGACTTCTGAAATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACCACTACACAACCAACATTTTGAATCCTATGACTTCTGAAATG  920

seq1  ATCAACTAAGTAAGTCATTGTTTTGGTAAAAGCTTATGGTATCAGGGCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTAAGTAAGTCATTGTTTTGGTAAAAGCTTATGGTATCAGGGCCA  970

seq1  GCAAGATGGCCCAGTAGGGAAAGGGTTTGGTCCCTGGAATGCACGTGGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGGCCCAGTAGGGAAAGGGTTTGGTCCCTGGAATGCACGTGGTG  1020

seq1  GAGAGGGGAAAGTTAACTCCAGTAATTTGTCCTGTGGCCTCTGCCCACAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGAAAGTTAACTCCAGTAATTTGTCCTGTGGCCTCTGCCCACAT  1070

seq1  ACCATGGTACATGCGTAAACAGGCATGTCTGTGCACACAGTCTCTCTCAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTACATGCGTAAACAGGCATGTCTGTGCACACAGTCTCTCTCAC  1120

seq1  ACACACTAAATTATTTTTTTAAATGCCATCAAAGGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTAAATTATTTTTTTAAATGCCATCAAAGGAATTC  1160