BAC Information

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BAC

Clone NameB6Ng01-052C24
Chromosome18 (Build37)
Map Location 68,276,826 - 68,429,868
singlet/doubletdoublet
Overlap geneD18Ertd653e, 4933403F05Rik
Upstream geneGnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939
Downstream geneRnmt, Mc5r, Mc2r, LOC100043380, EG225681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052C24.bB6Ng01-052C24.g
ACCDH875616DH875617
length1,117532
definitionDH875616|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C24, 5' end.DH875617|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,428,396 - 68,429,868)(68,276,826 - 68,277,363)
sequence
gaattcttatatatagatgacactaaagcatgacctgggcaggccaacat
gggagtgagacagtagagaaaagagtctacagaccttgttgaacagctag
agtgaagtggccagtgagcctgagaagccagctgggccagggtcctggca
ctgagtgcacgggagtcaggccaagggagccgtcttagagtgggcccagg
ctgttcactgggttcactgtgcctgtggtgtcacagaagccactaaaact
tacaagagcaggtcggtgggaatggaggagcaactgtgagagagatgagg
gagcatggttgctgctttccaaaggcttctgtgtagtgtgcctgcttgag
ctcctggtacctcgtggccatttgtttctgcaaagctctttcactgcttc
aagtctcttgattctttgtccttttctggcctgtgtcttagtcagggttt
tttcttgctgcataaaacatcttgaccaagatgcaagttgggaaggaaag
ggttttttcagtttacaccttccacattgctgttcatcaccaaagggagt
caggactggaactcaagcaggtccaggaagcaggagctgatgcagaggcc
atggagggatgtttcttactggtttgcttcccctggcttgctcagcttgc
tttcttatagatagaacccaggactgccagcccagggatggcaccaccct
caatgggctgggccctcctcattgaaaaaatgcctcacagctggatctca
cggaggcatttctgaagctcctgtatgataactccagcctatgtcaagtt
gacacacaaaaccagtacagcctgactctagcctagggagctgtcagctc
cagcctgtagtgtgggatgggagcaaacatgcaaagagagttaaaggaag
atggtttgagagttgagcaaaacagtaaagaagtatgtggctcagcctcc
tcccactgtttgactttcactgcacttgagcccagatgtacagtccatgc
agagacctagggcacaccacagtcagtaggtcaatgcagctgtcttgtga
taaccctgaaatctgaaatgctatcgtctgaggaacagacattttaattg
tctgcgcggaaaagtgt
agaactatgctgggtccagttgcagtcggttgccactggcaacaaacttc
tacctggttacttgatgtgtgtgttgggggggtgagccacaaagtgtgga
gacactggcctgtaaggcccactccataccccccttttgtttgcaacctt
tgtttctccaagacagttttcagatcaattagaaacttacagggtctaga
accaagcagttctgtctttttaaacaaaggtgaaggagaaatgggggagg
gacaacttaatctgatgggcatggtgtcctcctgctgtgacaccaaattc
actcccataaaaacagcctctcttagatttacattttgattctgctgtgt
gtacagggctgtcctacttcagatgaaatttatccacttctttaaatatt
tagtagtctagcgtggatgttaacaaaagtctgatgtgctattttgagaa
ttgcaacagtgatagtaatttccagtgtcagattcctgctttgcaaaggg
agcaaggcctgggaggaggaggaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68428396_68429868
seq2: B6Ng01-052C24.b_37_1153 (reverse)

seq1  ACACTTTTCCTTTGGTTTCTTGTAACTTCTCAGTGAGTCTGTCCTTTGTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTCCATTTTCTCTGTGATGAGCTCCTTCGTCTCTTCCATTCTGCCCTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAAGTACTCCTTGACAGGCGGTGGGGTTGACATGTAGCCGTGACTTCGCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AATACTTCACGGTAAAGGAGGTTCCTCCCAAGGTCACGGTGTAGCGGGCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGCGTTGCGATCTTAAGGGAAAAGAAAAGCAAACGGGATCAACATCTGAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGACTAAATAAAATGACGTTGAAGTTTACGTTCTTGGTAAGATTCAGC  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGACTACTGTTGGAGGTGAGTATACCACCCTATAGTGTCTTTCTAAGA  350
                                                        
seq2  --------------------------------------------------  0

seq1  TAGAATACTTTTCC-TGCAGACATTTTAAAATGTCTG-TCCTCAGACGAT  398
          | ||||||||  |||||||  |||||||||||| ||||||||||||
seq2  ----ACACTTTTCCGCGCAGACA-ATTAAAATGTCTGTTCCTCAGACGAT  45

seq1  AGCATTTCAGATTTCAGGGTTATCAC-AGACAGCTGCACTGACCCTTACT  447
      |||||||||||||||||||||||||| ||||||||||| |||||  ||||
seq2  AGCATTTCAGATTTCAGGGTTATCACAAGACAGCTGCATTGACC--TACT  93

seq1  GACCTGT-GTGTGCCCTAGGTCTCTGCATGGACTGTACATCTGGGCTCAA  496
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GA-CTGTGGTGTGCCCTAGGTCTCTGCATGGACTGTACATCTGGGCTCAA  142

seq1  GTGCAGTTGAAGGTCAAACAGTGGGAGGAGGCTGAGCCACATACTTCTTT  546
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGCAG-TGAAAGTCAAACAGTGGGAGGAGGCTGAGCCACATACTTCTTT  191

seq1  ACTGTTTTTGCTCAACTCTCAAACCATCTTCCTTTAACTCTCTTTGCATG  596
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTG-TTTTGCTCAACTCTCAAACCATCTTCCTTTAACTCTCTTTGCATG  240

seq1  TTTGCTCCCATCCCACACTACAGGCTGGAGCTGACAGCTCCCTAGGCTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCCATCCCACACTACAGGCTGGAGCTGACAGCTCCCTAGGCTAG  290

seq1  AGTCAGGCTGTACTGGTTTTGTGTGTCAACTTGACATAGGCTGGAGTTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCTGTACTGGTTTTGTGTGTCAACTTGACATAGGCTGGAGTTAT  340

seq1  CATACAGGAGCTTCAGAAATGCCTCCGTGAGATCCAGCTGTGAGGCATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGAGCTTCAGAAATGCCTCCGTGAGATCCAGCTGTGAGGCATTT  390

seq1  TTTCAATGAGGAGGGCCCAGCCCATTGAGGGTGGTGCCATCCCTGGGCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGAGGAGGGCCCAGCCCATTGAGGGTGGTGCCATCCCTGGGCTG  440

seq1  GCAGTCCTGGGTTCTATCTATAAGAAAGCAAGCTGAGCAAGCCAGGGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCTGGGTTCTATCTATAAGAAAGCAAGCTGAGCAAGCCAGGGGAA  490

seq1  GCAAACCAGTAAGAAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCAGTAAGAAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTT  540

seq1  CCTGGACCTGCTTGAGTTCCAGTCCTGACTCCCTTTGGTGATGAACAGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCTGCTTGAGTTCCAGTCCTGACTCCCTTTGGTGATGAACAGCA  590

seq1  ATGTGGAAGGTGTAAACTGAAAAAACCCTTTCCTTCCCAACTTGCATCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAGGTGTAAACTGAAAAAACCCTTTCCTTCCCAACTTGCATCTT  640

seq1  GGTCAAGATGTTTTATGCAGCAAGAAAAAACCCTGACTAAGACACAGGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGATGTTTTATGCAGCAAGAAAAAACCCTGACTAAGACACAGGCC  690

seq1  AGAAAAGGACAAAGAATCAAGAGACTTGAAGCAGTGAAAGAGCTTTGCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGACAAAGAATCAAGAGACTTGAAGCAGTGAAAGAGCTTTGCAG  740

seq1  AAACAAATGGCCACGAGGTACCAGGAGCTCAAGCAGGCACACTACACAGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATGGCCACGAGGTACCAGGAGCTCAAGCAGGCACACTACACAGA  790

seq1  AGCCTTTGGAAAGCAGCAACCATGCTCCCTCATCTCTCTCACAGTTGCTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGGAAAGCAGCAACCATGCTCCCTCATCTCTCTCACAGTTGCTC  840

seq1  CTCCATTCCCACCGACCTGCTCTTGTAAGTTTTAGTGGCTTCTGTGACAC  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCCCACCGACCTGCTCTTGTAAGTTTTAGTGGCTTCTGTGACAC  890

seq1  CACAGGCACAGTGAACCCAGTGAACAGCCTGGGCCCACTCTAAGACGGCT  1296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCACAGTGAACCCAGTGAACAGCCTGGGCCCACTCTAAGACGGCT  940

seq1  CCCTTGGCCTGACTCCCGTGCACTCAGTGCCAGGACCCTGGCCCAGCTGG  1346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCCTGACTCCCGTGCACTCAGTGCCAGGACCCTGGCCCAGCTGG  990

seq1  CTTCTCAGGCTCACTGGCCACTTCACTCTAGCTGTTCAACAAGGTCTGTA  1396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGGCTCACTGGCCACTTCACTCTAGCTGTTCAACAAGGTCTGTA  1040

seq1  GACTCTTTTCTCTACTGTCTCACTCCCATGTTGGCCTGCCCAGGTCATGC  1446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTTTCTCTACTGTCTCACTCCCATGTTGGCCTGCCCAGGTCATGC  1090

seq1  TTTAGTGTCATCTATATATAAGAATTC  1473
      |||||||||||||||||||||||||||
seq2  TTTAGTGTCATCTATATATAAGAATTC  1117

seq1: chr18_68276826_68277363
seq2: B6Ng01-052C24.g_65_602

seq1  GAATTCAGAACTATGCTGGGTCCAGTTGCAGTCGGTTGCCACTGGCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTATGCTGGGTCCAGTTGCAGTCGGTTGCCACTGGCAACA  50

seq1  AACTTCTACCTGGTTACTTGATGTGTGTGTTGGGGGGGTGAGCCACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTACCTGGTTACTTGATGTGTGTGTTGGGGGGGTGAGCCACAAAG  100

seq1  TGTGGAGACACTGGCCTGTAAGGCCCACTCCATACCCCCCTTTTGTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGACACTGGCCTGTAAGGCCCACTCCATACCCCCCTTTTGTTTGC  150

seq1  AACCTTTGTTTCTCCAAGACAGTTTTCAGATCAATTAGAAACTTACAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGTTTCTCCAAGACAGTTTTCAGATCAATTAGAAACTTACAGGG  200

seq1  TCTAGAACCAAGCAGTTCTGTCTTTTTAAACAAAGGTGAAGGAGAAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACCAAGCAGTTCTGTCTTTTTAAACAAAGGTGAAGGAGAAATGG  250

seq1  GGGAGGGACAACTTAATCTGATGGGCATGGTGTCCTCCTGCTGTGACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGACAACTTAATCTGATGGGCATGGTGTCCTCCTGCTGTGACACC  300

seq1  AAATTCACTCCCATAAAAACAGCCTCTCTTAGATTTACATTTTGATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACTCCCATAAAAACAGCCTCTCTTAGATTTACATTTTGATTCTG  350

seq1  CTGTGTGTACAGGGCTGTCCTACTTCAGATGAAATTTATCCACTTCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTACAGGGCTGTCCTACTTCAGATGAAATTTATCCACTTCTTTA  400

seq1  AATATTTAGTAGTCTAGCGTGGATGTTAACAAAAGTCTGATGTGCTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAGTAGTCTAGCGTGGATGTTAACAAAAGTCTGATGTGCTATTT  450

seq1  TGAGAATTGCAACAGTGATAGTAATTTCCAGTGTCAGATTCCTGCTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTGCAACAGTGATAGTAATTTCCAGTGTCAGATTCCTGCTTTGC  500

seq1  AAAGGGAGCAAGGCCTGGGAGGAGGAGGAGGAGGAGGA  538
      ||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGCAAGGCCTGGGAGGAGGAGGAGGAGGAGGA  538